Digital Commons Network^™

Transcriptome Of The Female Synganglion Of The Black-Legged Tick Ixodes Scapularis (Acari: Ixodidae) With Comparison Between Illumina And 454 Systems, Noble Egekwu, Daniel E. Sonenshine, Brooke W. Bissinger, R. Michael Roe

Biological Sciences Faculty Publications

Illumina and 454 pyrosequencing were used to characterize genes from the synganglion of female Ixodes scapularis. GO term searching success for biological processes was similar for samples sequenced by both methods. However, for molecular processes, it was more successful for the Illumina samples than for 454 samples. Functional assignments of transcripts predicting neuropeptides, neuropeptide receptors, neurotransmitter receptors and other genes of interest was done, supported by strong e-values (<-6), and high consensus sequence alignments. Transcripts predicting 15 putative neuropeptide prepropeptides ((allatostatin, allatotropin, bursicon α, corticotropin releasing factor (CRF), CRF-binding protein, eclosion hormone, FMRFamide, glycoprotein A, insulin-like peptide, ion transport peptide, myoinhibitory peptide, inotocin ( = neurophysin-oxytocin), Neuropeptide F, sulfakinin and SIFamide)) and transcripts predicting receptors for 14 neuropeptides (allatostatin, calcitonin, cardioacceleratory peptide, corazonin, CRF, eclosion hormone, gonadotropin-releasing hormone/AKH-like, insulin-like peptide, neuropeptide F, proctolin, pyrokinin, SIFamide, sulfakinin and tachykinin) are reported. Similar to Dermacentor variabilis, we found transcripts matching pro-protein convertase, essential for converting neuropeptide hormones to their mature form. Additionally, transcripts predicting 6 neurotransmitter/neuromodulator receptors (acetylcholine, GABA, dopamine, glutamate, octopamine and …

Fty720 (Fingolimod) Provides Insight Into The Molecular Mechanisms Of Multiple Sclerosis, Madelyn Elizabeth Crawford

Pursuit - The Journal of Undergraduate Research at The University of Tennessee

Multiple sclerosis (MS) is a neurodegenerative disorder caused by a prolonged immune- mediated inflammatory response that targets myelin. Nearly all of the drugs approved for the treatment of MS are general immunosuppressants or only function in symptom management. The oral medication fingolimod, however, is reported to have direct therapeutic effects on cells of the central nervous system in addition to immunomodulatory functions. Fingolimod is known to interact with sphingosine-1-phosphate (S1P) receptors, and the most widely- accepted theory for its mechanism of action is functional antagonism of the receptor. This review examines significant neuromodulatory effects achieved by functional antagonism of the …

Identification And Characterization Of An Operon, Msaabcr, That Controls Virulence And Biofilm Development In Staphlococcus Aureus, Gyan S. Sahukhal, Mohamed O. Elasri

Faculty Publications

Background

Community-acquired, methicillin-resistant Staphylococcus aureus strains often cause localized infections in immunocompromised hosts, but some strains show enhanced virulence leading to severe infections even among healthy individuals with no predisposing risk factors. The genetic basis for this enhanced virulence has yet to be determined. S. aureus possesses a wide variety of virulence factors, the expression of which is carefully coordinated by a variety of regulators. Several virulence regulators have been well characterized, but others have yet to be thoroughly investigated. Previously, we identified the msa gene as a regulator of several virulence genes, biofilm development, and antibiotic resistance. We also …

Arthropod Communities And Red-Headed Woodpecker (Melanerpes Erythrocephalus) Habitat Selection, Michael C. Lordon

DePaul Discoveries

Red-headed woodpecker populations are near-threatened. Their habitat selection and reproductive success may be related to the availability of arthropods. We sampled the arthropod community within 0.04 ha plots surrounding known nests and compared these findings to plots without nests in the same fragments of forest or park in Cook County, IL. After 14 days, the traps were recovered, yielding close to 45,000 arthropods across 10 orders. Nest and control site differences were not statistically significant. Differences between park and forest diversity were not statistically significant either, but the greater diversity values in forests were consistent with expectations. We conclude that …

Investigating The Viability Of Two Stenotrophomonas Maltophilia Isolates After Air-Drying, Samantha Lane, Joanna Brooke

DePaul Discoveries

Abstract

Stenotrophomonas maltophilia is a water-borne infectious bacterium that is found in both clinical (hospitals) and non-clinical environments. This human pathogen is commonly recovered from respiratory tract infections. A recent study at a hospital in Taiwan suggested that dry patient charts can serve as a vehicle of transmission of this bacterium⁷. As S. maltophilia is not commonly isolated from dry surfaces, this current study tested the hypothesis that this pathogen can remain viable for some time on a dry surface. This study was designed to determine how long S. maltophilia could remain viable after air-drying by observing …

Characterizing The Response Of Multidrug-Resistant Klebsiella Pneumoniae Species To The Application Of A Phage Cocktail, Steven Liu

Symposium

Project Summary: The application of bacteriophages to treat bacterial infections is known as phage therapy, which takes advantage of bacteriophage’s natural ability to infect and lyse bacterial hosts. Phages have been shaped by billions of years of evolution to be highly specialized deliverers of bactericidal agents to the cytoplasm of their target bacteria. Ever since discovery of bacteriophages in 1915, phage therapy was recognized as a potentially powerful tool for eliminating bacterial infections. The effectiveness of phage therapy can be increased by creating a mixture of multiple phages to target a wider variety of bacterial strains. Furthermore, phage therapy has …

Neuronostatin Inhibits Glucose-Stimulated Insulin Secretion Via Direct Action On The Pancreatic Α-Cell, Alison S. Salvatori, Mollisa M. Elrick, Willis K. Samson, John A. Corbett, Gina L.C. Yosten

Biological Sciences Faculty Research & Creative Works

Neuronostatin is a recently described peptide hormone encoded by the somatostatin gene. We previously showed that intraperitoneal injection of neuronostatin into mice resulted in c-Jun accumulation in pancreatic islets in a pattern consistent with the activation of glucagon-producing α-cells. We therefore hypothesized that neuronostatin could influence glucose homeostasis via a direct effect on the α-cell. Neuronostatin enhanced low-glucose-induced glucagon release in isolated rat islets and in the immortalized α-cell line αTC1-9. Furthermore, incubation with neuronostatin led to an increase in transcription of glucagon mRNA, as determined by RT-PCR. Neuronostatin also inhibited glucose-stimulated insulin secretion from isolated islets. However, neuronostatin did …

Association Between Symptomatic Vulvovaginal Candidiasis And Hiv Rna Levels In Plasma And Genital Secretions Among Women On Haart, Teke Apalata, William H. Carr, Benjamin Longo-Mbenza, Willem A. Sturm, P. Moodley

Publications and Research

Background. Genital tract (GT) inflammation plays a major role in HIV transmission. We aimed to determine the association between symptomatic vulvovaginal candidiasis (VVC) and HIV RNA levels in plasma and GTs of HIV-infected women on highly active antiretroviral therapy (HAART).

Method. Women with VVC on HAART were recruited from a primary healthcare clinic in KwaZulu-Natal Province, South Africa, between June 2011 and December 2011. VVC was diagnosed clinically, supported by Gram staining and culture of genital secretions. HIV RNA load was determined by reverse transcription polymerase chain reaction. CD4+ counts were obtained from patients’ medical records.

Results. Plasma HIV RNA …

Modeling The Transmission Dynamics Of Typhoid In Malaria Endemic Settings, Steady Mushayabasa, Claver P. Bhunu, Ngoni A. Mhlanga

Applications and Applied Mathematics: An International Journal (AAM)

Typhoid and malaria co-infection is a major public health problem in many developing countries. In this paper, a deterministic model for malaria and typhoid co-infection is proposed and analyzed. It has been established that the model exhibits a backward bifurcation phenomenon. Overall, the study reveals that a typhoid outbreak in malaria endemic settings may lead to higher cumulative cases of dually-infected individuals displaying clinical symptoms of both infections than singly-infected individuals displaying clinical symptoms of either malaria or typhoid.

Temporal Variations In The Abundance And Composition Of Biofilm Communities Colonizing Drinking Water Distribution Pipes, John J. Kelly, Nicole Minalt, Alessandro Culotti, Marsha Pryor, Aaron Packman

Biology: Faculty Publications and Other Works

Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities …

Identification And Characterization Of Microbial Contaminants And Associated Bacterial Viruses In Bioethanol Production Facilities To Suggest A Potential Alternative To Antibiotic Treatment, Charles Austin Coomer

Mahurin Honors College Capstone Experience/Thesis Projects

In recent years, bioethanol has received worldwide interest as a bioenergy source. This interest has stimulated the production of substantial quantities of ethanol annually. However, the inability to produce bioethanol under sterile conditions plagues the industry, resulting in frequent microbial contamination. Bacterial contamination is one of the more challenging problems facing the bioethanol industry because contaminants drastically lower ethanol yield. Conventional methods of antibiotic application to eradicate bacterial contaminants are expensive and prohibitive. A more sustainable approach to control bacterial contamination of industrial ethanol fermentation systems is to use bacteriophages (phage). The goal of this research was to create a …

The Isolation And Characterization Of Tirotheta9, A Novel A4 Mycobacterium Phage, Sarah Schrader

Mahurin Honors College Capstone Experience/Thesis Projects

Bacteriophages are the most abundant biological entities on earth, yet relatively few have been characterized. In this project, a novel bacteriophage was isolated from the environment, characterized, and compared with others in the databases. Mycobacterium smegmatis, a harmless soil bacterium, served as the host and facilitated the enrichment and recovery of mycobacteriophages. A single phage type was purified to homogeneity and named TiroTheta9 (TT9). Electron microscopy revealed that the phage particles have icosahedral heads 58 ± 2 nm in diameter and tails 174 ± 5 nm in length. The TT9 genomic DNA was purified and sequenced using 454 pyrosequencing …

Projected Future Distributions Of Vectors Of Trypanosoma Cruzi In North America Under Climate Change Scenarios, Miroslava Garza, Teresa Patricia Feria-Arroyo, Edgar A. Casillas, Victor Sanchez-Cordero, Chissa-Louise Rivaldi, Sahotra Sarkar

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Background

Chagas disease kills approximately 45 thousand people annually and affects 10 million people in Latin America and the southern United States. The parasite that causes the disease, Trypanosoma cruzi, can be transmitted by insects of the family Reduviidae, subfamily Triatominae. Any study that attempts to evaluate risk for Chagas disease must focus on the ecology and biogeography of these vectors. Expected distributional shifts of vector species due to climate change are likely to alter spatial patterns of risk of Chagas disease, presumably through northward expansion of high risk areas in North America.

Methodology/Principal Findings

We forecast the future …

Use Of Cholera Toxin B As A Vaccine Adjuvant Activates Antigen Presenting Cells And Stimulates Production Of Pro-Inflammatory Cytokines, Heather C. Romlein

Seton Hall University Dissertations and Theses (ETDs)

Francisella tularensis is an intracellular pathogen that has been classified as a category “A” bioterrorism agent by the Centers For Disease Control. To date, there is no approved vaccine to provide protection against this pathogen. Previous in vivo studies with mice have shown that a mucosally targeted vaccine preparation of inactivated F. tularensis (iFt) adjuvanted with Cholera toxin “B” (CTB), successfully granted full protection against a less virulent strain (FT LVS) of the bacterium and provided partial protection against a more virulent strain (SchuS4). However, the mechanisms of this protection are not fully understood. In this …

The Role Of Lipocalin 2 In Early Stage Colon Cancer Metastasis To The Liver, Fides Elamparo

Senior Theses

Metastasis, frequently from the colon to the liver, is the major cause of death with colorectal cancer, reducing the five-year survival to less than 6%. Metastasis occurs due to productive collaborations between tumor cells and host-derived cells in the tumor microenvironment, where a pre-metastatic niche is created to prime for cancer cell invasion into the target organ. In a highly metastatic colorectal cancer cell line implanted into the cecum of Balb/c mice, microarray analysis showed lipocalin 2 (Lcn2) is one of the most highly expressed proteins in the liver of tumor-bearing mice prior to metastasis.

When RT-PCR was performed, greater …

Exploration Of Genomic Determinants For Host Range In Phages Of Pathogenic And Non-Pathogenic Mycobacteria, Anisa Christine Tracy

Masters Theses, 2010-2019

The genus Mycobacterium is diverse, ranging from slow-growing human pathogens such as M. tuberculosis to fast-growing saprophytes such as M. smegmatis. M. ulcerans is the causative agent of the neglected disease known as Buruli ulcer, an emerging pathogen first described in Buruli County, Uganda. Antibiotic resistance among Mycobacterial pathogens is growing at an alarming rate and is creating an urgent need for novel diagnostic and therapeutic approaches. Elucidating the details of virus/host interactions among the mycobacteria and their phages thus has the potential to affect how we think about the role of these bacteria in both clinical and environmental settings. …

Interleukin-3-Deficient Mice Have Increased Resistance To Blood-Stage Malaria, Sarah Rebekah Auclair

Masters Theses, 2010-2019

The contribution of interleukin-3 (IL-3), a hematopoietic growth factor and immunoregulatory cytokine, to resistance to blood-stage malaria was investigated by infecting IL-3-deficient (knockout [KO]) mice with Plasmodium berghei NK65. The results show that endogenous IL-3 significantly alters the susceptibility of BALB/c mice to P. berghei NK65 infection as reflected by measures of survival, anemia, parasitemia, and splenomegaly. Male IL-3 KO mice, but not female mice, were more resistant to infection than wild-type (WT) mice, as evidenced by lower peak parasitemia and prolonged survival. Both male and female IL-3 KO mice had increased splenomegaly and were more anemic than corresponding WT …

Diverse Gastropod Hosts Of Angiostrongylus Cantonensis, The Rat Lungworm, Globally And With A Focus On The Hawaiian Islands, Jaynee Kim, Kenneth Hayes, Norine Norine W Yeung, Robert Cowie

Department of Biology Faculty Publications

Eosinophilic meningitis caused by the parasitic nematode Angiostrongylus cantonensis is an emerging infectious disease with recent outbreaks primarily in tropical and subtropical locations around the world, including Hawaii. Humans contract the disease primarily through ingestion of infected gastropods, the intermediate hosts of Angiostrongylus cantonensis. Effective prevention of the disease and control of the spread of the parasite require a thorough understanding of the parasite's hosts, including their distributions, as well as the human and environmental factors that contribute to transmission. The aim of this study was to screen a large cross section of gastropod species throughout the main Hawaiian Islands …

Characterization Of A Putative Cephalotoxin From The Hemocytes Of Euprymna Scolopes, Jessie E. Scott

University Scholar Projects

Many organisms have beneficial microbial symbionts, and complex interactions between the immune system and the bacteria must occur to allow these symbioses to persist. The host immune system must recognize and preferentially tolerate the beneficial microorganisms, while simultaneously eliminating harmful pathogens. The Hawaiian bobtail squid, Euprymna scolopes, is a model organism for host-microbe interactions because of the unique light organ symbiosis. Hemocytes, the squid’s primary immune cell, infiltrate and patrol the light organ and continuously interact with the symbiont Vibrio fischeri. Using this model, several innate immunity genes have been shown to be differentially expressed in the hemocytes …

Reconstructing New World Monkey Phylogeny: Alu Elements In The Common Marmoset Genome, Catherine Fontenot

Honors Capstones

No abstract provided.

Identification And Expression Analysis Of Sugar Transporters In Microbotryum Violaceum., Jared Morris Andrews

College of Arts & Sciences Senior Theses

No abstract provided.

Cell Kinase Inhibitor Panel Reveals Multiple Targets To Prevent Replication Of Varicella-Zoster Virus, Bryan Egan Bunnell

Renée Crown University Honors Thesis Projects - All

The alphaherpesvirus that causes chicken pox and shingles, varicella-zoster virus (VZV), infects skin fibroblasts and keratinocytes. These cells are typically quiescent and it is known that VZV manipulates their intracellular environment to activate MAPK signaling cascades, cell cycle regulators, and many transcription factors for its replication. We hypothesized that inhibition of cell kinases would prevent VZV replication and also elucidate which pathways are most important. We evaluated 80 kinase inhibitors for cytotoxicity and anti-proliferative effects on human foreskin fibroblasts, and then determined their antiviral efficacy against VZV-ORF9-Luc strain. Ten well-tolerated, potent kinase inhibitors whose targets are critical mediators of VZV …

Differences In Consumption Rates Between Juvenile And Adult Laccophilus Fasciatus Rufus (Coleoptera: Dytiscidae) On Larval Culex Quinquefasciatus (Diptera: Culicidae), Carmen E. Bofill

Honors Theses

With the increase of global temperature and human populations, prevalence of vector-borne diseases is becoming an issue for public health. Over the years these vectors have been notorious for developing resistance to human regulated insecticides. Thus, other forms of control, including the use of natural predators, have become an important topic in research. Research on member of the family of predaceous diving beetles (Dytiscidae) and their predatory ability to decrease aquatic mosquito larvae populations has been of recent interest. The purpose of this study is to 1) quantify consumption rates of the dytiscid Laccophilus fasciatus rufus juvenile and adults on …

Role Of Il-17 In Cd8+ T Cell Mediated Clearance Of West Nile Virus, Jordan E. Lowery

Honors Theses

West Nile virus (WNV), a positive sense single stranded RNA flavivirus, is prevalent in many countries worldwide and is a growing threat in the United States. Some patients infected with WNV develop severe neuroinvasive disease including meningitis or encephalitis which may lead to death. The recently characterized cytokine interleukin-17 (IL-17) has been implicated in several autoimmune diseases, neuroinflammatory conditions, and immune responses to various microbial infections. Previous research has indicated that a known contributor to IL-17 production, interleukin-23, is produced in response to WNV infection, but the role of IL-17 during WNV infection has not been studied before. This study …

Antimicrobial Resistance Of Channel Catfish Intestinal Microflora In The Arkansas And Ninnescah Rivers In Kansas, Jordan R. Hofmeier

Master's Theses or Doctor of Nursing Practice

Antimicrobial compounds have been used by humans to counteract bacterial infections since 1910. Overuse of these compounds in clinical and agricultural applications has led to rapid evolution and global spread of antimicrobial resistance and rivers are the main receiving body for antimicrobials and resistant bacteria from urban effluents and agricultural runoff. When antimicrobial-resistant bacteria enter the aquatic environment, water acts as a physical pathway for their distribution. Subsequently, resistance genes become established in natural systems and pose threats to human health and ecological processes. Due to these potential threats, antimicrobial resistance in the aquatic environment should be closely monitored. To …

Dispersal Of Antibiotic-Resistant Bacteria Near Central Great Plains Feedlots, Jennifer R. Pfannenstiel-Klaus

Master's Theses or Doctor of Nursing Practice

Antibiotic resistance is a growing concern in medical and veterinary settings. Resistance can be worsened by misuse and overuse of antibiotics. Such situations can give rise to highly resistant organisms. Ciprofloxacin, a synthetic, broad-spectrum antibiotic used to treat gram-positive and gram-negative infections in humans, has similar chemical structure to enrofloxacin, which is used to treat animals. Cross-resistance might arise because of that similarity. This research describes the dispersal and prevalence of bacteria that exhibit ciprofloxacin resistance in relation to feedlots in the central Great Plains region. Six times in 2013, six feedlots were sampled for airborne bacterial communities at, upwind …

Epidemiology And Virulence Of Clostridium Difficile : An Evolutionary Perspective., Lindsey E. Hastings

College of Arts & Sciences Senior Theses

The emergence of virulent, antibiotic-resistant Clostridium difficile ribotypes over the past thirty years has greatly concerned both the medical and research communities. As of 2010, C. difficile has surpassed methicillin-resistant Staphylococcus aureus (MRSA) as a cause of nosocomial infections and is now found in both healthcare settings and outside communities in the United States. Attendant-borne transmission in hospitals has been associated with the evolution of increased virulence in other nosocomial pathogens, but evolutionary theory has yet to be applied to the epidemiology and virulence of C. difficile. Differences between nosocomial C. difficile infections (CDI) and community-associated CDI (CA-CDI) mortality and …

Natural And Exogenous Genome Editing In Wiskott-Aldrich Syndrome Patient Cells, Tamara J. Laskowski

Dissertations and Theses (Open Access)

Wiskott-Aldrich syndrome (WAS) is an X-linked primary immunodeficiency disease characterized by thrombocytopenia, recurrent infections and increased autoimmunity. This disease is caused by mutations in the WAS gene (WAS) which encodes for the WAS protein (WASp), exclusively expressed in hematopoietic cells and required for proper platelet production and lymphoid cell function. Approximately 11% of patients with WAS exhibit a phenomenon called Somatic Revertant Mosaicism which is characterized by the presence of lymphocytes which naturally revert back to normal phenotype by restoring WASp expression. To date, the mechanisms of this naturally-occurring gene therapy remains poorly understood, and the full extent …

Identification Of Hcmv Ul97 In Gbm Cell Lines And A Possible Role For Ganciclovir, Thomas Mcfall

All NMU Master's Theses

Glioblastoma multiforme (GBM) is the most common form of malignant glioma, comprising 80% of all malignant gliomas. Recently, active Human Cytomegalovirus (HCMV) was identified in GBM cells, and has been a topic of debate concerning its role with tumor progression. This study used three established GBM cell lines; T98, LN229, and U87 in order to identify and examine the presence of HCMV phosphotransferase protein UL97. Reverse transcriptase polymerase chain reaction identified UL97 within two of the three cell lines, T98 and LN229. Western blotting confirmed that UL97 protein was being expressed and was present in both T98, and LN229 cell …

Assessment Of The Human Pathogen Vibrio Vulnificus In Louisiana Eastern Oysters Crassostrea Virginica Harvested From Barataria Bay At Different Salinities With Subsequent Depuration Treatment, Sarah Beth Theriot

Honors Capstones

No abstract provided.