Digital Commons Network^™

Life After Death – Does Carcass Biodiversity Scale With Carcass Body Size?, Troy Warfield

Biological Sciences Undergraduate Honors Theses

Mammals play a large role in the ecosystems where some, especially large-bodied mammals, act as ecosystem engineers. Mammal carcasses, particularly those of large body mass act as a temporary island of dense nutrients that support other organisms, including other mammal species, for an extended period. Research in this field currently focuses on the link between mammal carcass size and nutrient availably or on non-mammalian size and biodiversity, but little is available on the correlation between mammal carcass size and its influence on ecosystem biodiversity. Here we ask, does the available biomass (i.e., body size) of the carcass affect its role …

Seasonality Of Orthohantavirus Seroprevalence In Northwest Arkansas Rodents, Amy Schexnayder

Biological Sciences Undergraduate Honors Theses

Zoonotic viruses are viruses that can be transmitted from animals to humans. Rodent species are likely to be reservoirs for zoonotic viruses, and particular rodent-borne viruses, such as orthohantaviruses, may greatly threaten human health. Orthohantaviruses are a group of rodent-borne viruses that are at risk for spillover to human populations. Many aspects of orthohantaviruses have been well-researched, yet the seasonality of orthohantaviruses has not yet been thoroughly examined, especially in the southern United States. In this study, we captured 616 rodents trapped over 5953 trap nights across 13 grassland sites in Northwest Arkansas. Rodents were trapped for two consecutive nights …

The Impacts Of Holocene Climate And Pre-Columbian Humans On Neotropical Andean Forests, Rachel Kathleen Sales

Theses and Dissertations

Humid montane forests in the tropical Andes form hotspots for biodiversity, endemism, and conservation. Threats to the forests from deforestation are amplified by ongoing climate change, which could further reduce available habitat area by about 57 – 80%. These forests are known to have withstood considerable climate change in the past, and an emerging view suggests that they have also been shaped by a long interaction with people. Although climate-driven species range shifts are broadly known, questions remain about how past climate change has affected the species composition of these forests. The interaction of people with forests on the eastern …

A Starling In A Pear Tree: Assessing The Influence Of Bird Dispersal On Callery Pear (Pyrus Calleryana), Olivia Clark

Honors Theses

Invasive species can disrupt ecosystems and negatively affect other species. Callery pear (Pyrus calleryana) is an invasive ornamental tree that is spreading quickly throughout the United States. It is possible that birds are responsible for spreading Callery pear by eating the fruit and depositing seeds in new areas. European starlings (Sturnus vulgaris) and American robins (Turdus migratorius) are mentioned in most studies as responsible for the dispersal of Callery pear. However, there is also evidence that Cedar waxwings (Bombycilla cedrorum) also feed on the tree. Invasive plants can impact avian health, reproduction, and migration. Additionally, there are many aspects of …

Effects Of Temperature And Plant And Animal Diets On Metabolic Rate In The Juvenile Red Eared Slider (Trachemys Scripta Elegans), Taylor Macdonald, Sarah Bouchard

Undergraduate Honors Thesis Projects

Specific dynamic action (SDA) is the energy expended during ingestion, digestion, absorption, and assimilation of a meal, and is influenced by meal (type, size, composition, and temperature) and environmental temperature. Understanding the effect of meal type and environmental temperature on SDA in turtles is important in describing how T. s. elegans may acclimate with changing environmental temperatures. In this study, we conducted feeding trials in which we fed juvenile T. s. elegans duckweed and mealworm diets at 25°C and 30°C. We measured the rate of oxygen consumption as a proxy for metabolic rate after feeding for four 30 minute consecutive …

Ranking The Biases: The Choice Of Otus Vs. Asvs In 16s Rrna Amplicon Data Analysis Has Stronger Effects On Diversity Measures Than Rarefaction And Otu Identity Threshold, Marlène Chiarello, Mark Mccauley, Sébastien Villéger, Colin R. Jackson

Faculty and Student Publications

Advances in the analysis of amplicon sequence datasets have introduced a methodological shift in how research teams investigate microbial biodiversity, away from sequence identity-based clustering (producing Operational Taxonomic Units, OTUs) to denoising methods (producing amplicon sequence variants, ASVs). While denoising methods have several inherent properties that make them desirable compared to clustering-based methods, questions remain as to the influence that these pipelines have on the ecological patterns being assessed, especially when compared to other methodological choices made when processing data (e.g. rarefaction) and computing diversity indices. We compared the respective influences of two widely used methods, namely DADA2 (a denoising …

Lianas Significantly Reduce Aboveground And Belowground Carbon Storage: A Virtual Removal Experiment, Sergio Estrada-Villegas, Sara Sofia Pedraza Navaez, Adriana Sanchez, Stefan A. Schnitzer

Biological Sciences Faculty Research and Publications

Lianas are a quintessential tropical plant growth-form; they are speciose and abundant in tropical forests worldwide. Lianas compete intensely with trees, reducing nearly all aspects of tree performance. However, the negative effects of lianas on trees have never been combined and quantified for multiple tropical forests. Here, we present the first comprehensive standardized quantification of the effect of lianas on trees across tropical forests worldwide. We used data from 50 liana removal experiments and quantified the effect size of lianas on tree growth, biomass accretion, reproduction, mortality, leaf water potential, sap flow velocity, and leaf area index (LAI) across different …

Chronic Background Radiation Correlates With Sperm Swimming Endurance In Bank Voles From Chernobyl, Kati Kivisaari, Sara Calhim, Zbyszek Boratyríski, Timothy Mousseau, Anders P. Møller, Tapio Mappes

Faculty Publications

Sperm quantity and quality are key features explaining intra- and interspecific variation in male reproductive success. Spermatogenesis is sensitive to ionizing radiation and laboratory studies investigating acute effects of ionizing radiation have indeed found negative effects of radiation on sperm quantity and quality. In nature, levels of natural background radiation vary dramatically, and chronic effects of low-level background radiation exposure on spermatogenesis are poorly understood. The Chernobyl region offers a unique research opportunity for investigating effects of chronic low-level ionizing radiation on reproductive properties of wild organisms. We captured male bank voles (Myodes glareolus) from 24 locations in the Chernobyl …

“Albertania” And “Egbenema”, Panding Biodiversity In The Oculatellaceae (Cyanobacteria)., Mildred Akagha

Masters Theses

To conduct molecular studies of cyanobacteria of Lagos, Nigeria, a total of eight soil/subaerial samples were collected in Lagos State, Nigeria, and used to isolate cyanobacterial cultures that were characterized microscopically, sequenced, and phylogenetically analyzed. Within the resulting set of cultures, a number of Synechococcales were observed, particularly belonging to Oculatellaceae. “Egbenema” and two new putative species of the recently described genus Albertania were found. Both genera belong to a supported clade within the Oculatellaceae that includes Trichotorquatus and Komarkovaea. The two new putative species of Albertania, “A. egbensis” and “A. latericola”, were from …

Ecological Risk Assessment For The Western Rock Lobster Resource : Workshop Procedure And Outcomes, R Stoklosa

Fisheries Occasional Publications

No abstract provided.

First Contribution To Labiobaetis Novikova & Kluge In Cambodia (Ephemeroptera, Baetidae), With Description Of Two New Species, Thomas Kaltenbach, Jhoana M. Garces, Jean-Luc Gattolliat

Biology Faculty Publications

Material collected in 2018 in Cambodia gives us first insights into the diversity of Labiobaetis Novikova & Kluge, 1987 in this country. No species has been reported so far. We identified two new species using a combination of morphology and genetic distance (COI, Kimura 2-parameter). They are described and illustrated based on their larvae. A key to all Labiobaetis species of continental Southeast Asia is provided. The interspecific K2P distance between the two new species is 20–21%, the intraspecific distance of one of them is 1%. The total number of Labiobaetis species worldwide is augmented to 156.

Effects Of Drought On Habitat Quality For Native Bees In Residential Gardens Of Claremont, Ca, Max Proctor

CMC Senior Theses

Over 1,500 of the 4000 bee species found in North America inhabit California. Native bees are declining however, largely due to climate change and agricultural intensification. Previous research shows that cities can sustain diverse bee communities, due to the diversity of ornamental flowers. Urban green space represents an opportunity for native bee conservation. Residential gardens provide lots of green space and are urban pollinator hotspots. Managing yards for increased floral resources and nesting habitat can benefit native bee communities. Turfgrass provides few floral or nesting resources and negatively correlates with bee diversity. The 2011-2017 California drought caused many homeowners to …

Validation Of The Use Of Clathromorphum Compactum Growth And Skeletal Δ18o As A Proxy For Seawater Conditions, Teagan Mcmahon

Pitzer Senior Theses

Crustose coralline algae (CCA) are important organisms that create benthic habitat in the photic zone of oceans worldwide. CCAs mechanisms of photosynthesis and calcification may, in some cases, make them vulnerable to climate change and ocean acidification. Therefore, CCA are important not only for their ecological role within ecosystems but also for their ability to indicate the effects that ocean acidification and climate change may have on other marine calcifying organisms. Some species of CCA are known to be useful recorders of paleo oceanic conditions. These climate archives and reconstructions of past environmental conditions are important for understanding past changes …

Industrial Hemp As A Resource For Birds In Agroecosystems: Human–Wildlife Conflict Or Conservation Opportunity?, Emily A. Kotten, Iona Hennessy, Bryan M. Kluever, Zachary T. Brym, Bradley F. Blackwell, Lee A. Humberg, Page E. Klug

Human–Wildlife Interactions

Industrial hemp (Cannabis sativa L.; hemp) is an emerging crop in the United States with little known about bird use or the potential for birds to become an agricultural pest. We identified birds associated with hemp fields, using repeated visits to oilseed plots in North Dakota, USA (n = 6) and cannabinoid (CBD) plots in Florida, USA (n = 4) from August to November 2020. We did not control for plot area or density; our observations were descriptive only. We observed 10 species in hemp, 12 species flying over hemp, and 11 species both foraging in and …

Vocal Analysis Of The Newly Described Atlantic Coast Leopard Frog, Carrie J. Kosiba

Senior Honors Theses and Projects

Urbanization alters animal behaviors and especially impacts amphibians due to their sensitivity to environmental change, small home ranges, and reliance on acoustic communication to locate mates. A newly discovered leopard frog species, Rana kauffeldi, was recently described from the New York City metro area. This species was previously characterized as R. sphenocephala due to their nearly identical morphology, but the two species are distinguished based on genetics and calling characteristics. The goal of this project was to document calling intensity and phenology (timing) differences between urban and rural populations of R. kauffeldi, as well as describe variation across …

Biotic Characteristics Of Managed And Unmanaged Coastal Dunes In The Outer Banks, North Carolina, Andrew E. White

Theses and Dissertations

Under future climate change and sea level rise scenarios, Natural and Nature-Based Features (e.g., dunes) that protect coastal habitat and infrastructure will be exposed to increased wave energy and storm surge. Understanding how these forces will impact coastal dunes is necessary for their continued use as protective features. Coastal dunes develop through feedback between vegetation and sediment deposition, a process complicated by species-specific growth rates and responses to burial. Wave flume studies have tested the effects of dune vegetation on erosion and found multiple plant organs across several functional types to be important for resisting erosion. Although dune building and …

Quantifying Genomic Diversity And Growth In Iowa Bluegill, Jeremy Raymond Abels

Dissertations and Theses @ UNI

Bluegill (Lepomis macrochirus) is one of the most fished species in Iowa. However, after an initial stocking event, lakes rarely receive additional stockings owing to a high rate of natural reproduction. For this reason, the genetic diversity of Bluegill populations remains understudied in the context of fisheries and natural resource management. Additionally, the extent to which genetics influences the growth rate of Bluegill on a population level has not yet been extensively examined. The goal of this study was to understand the diversity of Iowa’s Bluegill population and to determine if there is a genetic association with growth …

Population Ecology Of The Queensnake (Regina Septemvittata) In An Urban Creek, 2008 To 2019, Rachel Beiler, R. Elliot Miller, Norman Reichenbach

Faculty Publications and Presentations

Habitat fragmentation is a common result of urbanization and species living in these fragments are at risk of extirpation. We conducted a 12-y (2008–2019) capture-mark-recapture study on snakes living in a 593-m section of Rock Castle Creek flowing through an urban area in central Virginia, USA. Our study site was occupied primarily by Queensnakes (Regina septemvittata). We used data from 168 individual Queensnakes to examine several aspects of their population ecology including survival rates (0.52), reproductive effort (21.3% juvenile to adult ratio), growth rates (68% and 30.6% increase for 1 to 2 y-old and 2 to 3+ y-old snakes, respectively), …

Cognitive Ecology Of Color Vision In Orchid Bees, Andreia Queiroz Santos A Figueiredo

Dissertations

Animals interact with their environment and acquire information from it. Information can be processed by their sensory systems and influence behavior, often mediated through mechanisms of decision-making and learning. Animal pollinators acquire information from flowers and use this information to make decisions about the flowers they visit. My research aimed to understand the role of color vision in a tropical pollinator, the orchid bee Euglossa dilemma. Chapter 1 is a review exploring pollination through the lens of prepared learning. Prepared learning proposes that animals learn some associations better than others due to an evolved match with the environment. I …

Studying Neurotoxic Effects Of Three Synthetic Insecticides And Two Herbal Infusions On The Nervous System Of The Fruit Fly Drosophila Melanogaster, Sara Khamis Obaid Hamarain Al Dhaheri

Theses

Pesticides applied on plants and animals can reach the human diet once they enter food chains. Insecticides are neurotoxic agents; they have the potential of causing damage to the nervous system in people. The damage could induce or promote neurodegenerative diseases such as the Parkinson’s and Alzheimer's. It is well-documented that the exposure to the insecticide chlorpyrifos (CPF) stimulate the Parkinson disease in humans and experimental animals. Thus, this research project will study effect of three synthetic insecticides pirimicarb, tefluthrin, and CPF on the nervous system of Drosophila melanogaster as a model organism. In addition, the project will evaluate the …

Biological Soil Crusts Of The Great Plains: A Review, Steven D. Warren, Roger Rosentreter, Nicole Pietrasiak

Biology Faculty Publications and Presentations

Biological soil crusts (BSCs), or biocrusts, are composed of fungi, bacteria, algae, and bryophytes (mosses, etc.) that occupy bare soil, entwining soil particles with filaments or rootlike structures and/or gluing them together with polysaccharide exudates to form a consolidated surface crust that stabilizes the soil against erosion. BSCs are common in arid and semiarid regions where vascular plant cover is naturally sparse, maximizing the exposure of surface-dwelling organisms to direct sunlight. Although less prominent and less studied there, BSC organisms are also present in more mesic areas such as the Great Plains where they can be found in shortgrass and …

Effects Of Patch Size, Fragmentation, And Invasive Species On Plant And Lepidoptera Communities In Southern Texas, James A. Stilley, Christopher A. Gabler

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Simple Summary

Human land use has removed habitats, separated habitats into small and disconnected fragments, and introduced foreign species, which all harm wildlife. South Texas is highly diverse and home to many endangered species, but human disturbance threatens its wildlife. In south Texas, we poorly understand how different aspects of human land use influence wildlife diversity and abundance. We studied this by surveying plants and butterflies in 24 habitat fragments in south Texas that differed in size, shape, type, and land use history. Human disturbance was extensive, and foreign and weedy species were dominant in most habitats. Habitat types had …

Seasonal Habitat Use Of Diamondback Terrapins (Malaclemys Terrapin) In North Inlet, Winyah Bay, Georgetown, South Carolina, Danielle Elizabeth Capella

Electronic Theses and Dissertations

No abstract provided.

Corbicula Fluminea Effects On Survival, Growth, And Drift Of Juvenile Lampsilis Siliquoidea In Laboratory Exposures, Allison Nicole Sieja

Graduate Theses/Dissertations

The Asian clam, Corbicula fluminea, is an invasive species that is abundant and often co-occurs with native freshwater mussels. Corbicula is widely suspected of having negative effects on native mussels, but few studies have empirically tested this hypothesis. I used laboratory experiments to evaluate how adult Corbicula affected the survivorship, growth, and drift of juvenile Lampsilis siliquoidea. Survival and growth of newly metamorphosed mussels were tested in downwelling flow-through chambers with glass-bead substrate. Treatments were control (no clams), small adult clams, or large adult clams. After 28 days, large clams slightly but significantly reduced the number of juveniles …

The Role Of Genome Duplication In Big Sagebrush Growth And Fecundity, Bryce A. Richardson, Matthew J. Germino, Marcus V. Warwell, Sven Buerki

Biology Faculty Publications and Presentations

Premise: Adaptive traits can be dramatically altered by genome duplication. The study of interactions among traits, ploidy, and the environment are necessary to develop an understanding of how polyploidy affects niche differentiation and to develop restoration strategies for resilient native ecosystems.

Methods: Growth and fecundity were measured in common gardens for 39 populations of big sagebrush (Artemisia tridentata) containing two subspecies and two ploidy levels. General linear mixed-effect models assessed how much of the trait variation could be attributed to genetics (i.e., ploidy and climatic adaptation), environment, and gene–environment interactions.

Results: Growth and fecundity variation were explained well …

The Invasive Bank Vole (Myodes Glareolus): A Model System For Studying Parasites And Ecoimmunology During A Biological Invasion, Andrew Mcmanus, Celia V. Holland, Heikki Henttonen, Peter Stuart

Publications

Animals, vol. 11, no. 9. © 2021 by the authors.

Analyzing Genetic Variation Of The Tussock Cottongrass Among Ecotypes Along A Latitudinal Gradient Through Transcriptomics, Carmen Webster

Open Access Theses & Dissertations

The Arctic is seeing some of the most extreme effects of climate change that induce environmental pressures, including warmer temperatures and longer growing seasons. Due to this, taxa may need to adapt or migrate in order to survive. The long-lived tussock cottongrass, Eriophorum vaginatum, is a foundation species in the Arctic, and little is currently known about the genetic constraints that could be playing a role in how this species will respond to the changing climate. Specific gene families that play an important role in signaling genetic pathways related to plant phenology and response to environmental stress are likely to …

Quantifying Resource Use Among Insectivorous Bat Species With Overlapping Distributions, Shannon Whitney

Master of Science in Integrative Biology Theses

Bats make up 20% of all mammalian species, are globally distributed, and are the only mammals capable of sustained flight. Bats have adapted to feed on insects, scorpions, aquatic arthropods, mammals, birds, reptiles, amphibians, fish, blood, carrion, fruit, flowers, nectar, pollen, and even seeds and foliage. However, the feeding ecology of these organisms is not well understood. Most bat species in North America rely on the same method of foraging and locomotion. The geographical range and habitats of these bats also commonly overlap. Bat feeding ecology studies have used fecal analysis to identify consumed prey species. Factors such as time …

The Ecology Of Rural Roads: Effects, Management, And Research, Alisa W. Coffin, Douglas S. Ouren, Neil D. Bettez, Luís Borda-De-Água, Amy E. Daniels, Clara Grilo, Jochen A.G. Jaeger, Laetitia M. Navarro, Haiganoush K. Preisler, Emily Rauschert

Biological, Geological, and Environmental Faculty Publications

No abstract provided.

A Review Of Marine Turtle Orientation And Artificial Lighting Impacts With Novel Results From Florida’S Gulf Coast, Andrea M. Fisher

USF Tampa Graduate Theses and Dissertations

Artificial light (i.e. unnatural light emitting from a human-made source) is one of the most extensively distributed, and least managed, type of anthropogenic pollution. Due to the disproportionally high rates of urbanization in critical coastal ecosystems, species, like marine turtles that use beach habitat for nesting activities, are especially vulnerable. Marine turtles employ the use of multiple visual cues (e.g. wavelength, intensity, background illumination, and dark silhouettes) to conduct sea-finding behavior and different variations in cue usage exist across species and geographic location. During nesting and emergence activities, orientation can be interrupted and manipulated by artificial lighting resulting in lower …