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A Hybrid First Year Science Course For Engineering Students – Integrating Biology With Chemistry, David Harding, Pauline Schwartz, Jean Nocito-Gobel, Agamemnon Koutsospyros

Civil Engineering Faculty Publications

Biology is playing an increasingly important role in many engineering fields. With the typical engineering program already having a high credit hour requirement, the question becomes, how to best integrate biology concepts into a packed engineering curriculum. A typical biology course is not likely to introduce the important concepts of biology to engineering students. The solution here is to develop a hybrid course that integrates chemistry and biology. In the course, Chemistry with Applications to Biosystems, the concept is to develop a course that integrally links important concepts of chemistry and biology. The course focuses on the areas of biology …

Molecular Analysis Of Arabidopsis Thaliana Genes Involved In Stress Response, Jessica M. Whitlock

Renée Crown University Honors Thesis Projects - All

Arabidopsis thaliana is an excellent model plant to study various plant processes, including plant’s response to environment, its interactions with other organisms, etc. In this study I characterized eight Arabidopsis genes that are likely to regulate plant’s responses to biotic and abiotic stresses. Microarray analysis was done previously in our lab to identify Arabidopsis genes that are differentially expressed in response to various biotic and abiotic stresses and several plant hormones. The biotic stresses include bacterial, fungal and viral pathogens (both virulent and avirulent strains), sucking and chewing insects. The abiotic stresses include chemicals that induce variety of oxidative stresses …

Shark Bay Prawn And Scallop Fisheries. Draft Review Report, Department Of Fisheries Western Australia

Fisheries Management Papers

In recent times, the Department of Fisheries has received representations from both sectors about the ongoing interaction of the fisheries and their respective management settings. As a result, a decision was made to comprehensively review the fisheries, taking into account matters of fishery sustainability and gear interactions, together with industry economics and market considerations. The review has also addressed research requirements to ensure an appropriate scientific basis for decision-making into the future.

Integration Without Unification: An Argument For Pluralism In The Biological Sciences, Sandra D. Mitchell, Michael R. Dietrich

Dartmouth Scholarship

In this article, we consider the tension between unification and pluralism in biological theory. We begin with a consideration of historical efforts to establish a unified understanding of evolution in the neo‐Darwinian synthesis. The fragmentation of the evolutionary synthesis by molecular evolution suggests the limitations of the general unificationist ideal for biology but not necessarily for integrating explanations. In the second half of this article, we defend a specific variety of pluralism that allows for the integration required for explanations of complex phenomena without unification on a large scale.

Phylogeographic Analyses Of Obligate And Facultative Cave Crayfish Species On The Cumberland Plateau Of The Southern Appalachians, Jennifer Elizabeth Buhay

Theses and Dissertations

Cave systems and their unique biota are widely viewed as highly endangered, yet very little is known about basic life history, ecology, distributions, habitat requirements, and evolutionary relationships of subterranean species. The crux of the problem in cave studies is the assumption that traditionally defined morpho-species represent distinct evolutionary lineages. Convergence is exhibited in the morphologies of many animal groups, vertebrate and invertebrate, which leads to confusion in diagnosing species' boundaries, geographic distributions, gene flow routes, and imperilment. This dissertation research includes phylogeographic analyses of freshwater cave-dwelling crayfishes in the Southern Appalachians, a global hotspot of subterranean biodiversity. By examining …

Systematics Of The Sympetrine Dragonflies With Emphasis On The Phylogeny, Taxonomy, And Historical Biogeography Of The Genus Sympetrum (Odonata: Libellulidae), Erik M. Pilgrim

Biology

Within dragonflies and damselflies, the family Libellulidae is the largest. The systematics have never been analyzed in a phylogenetic context. Using both molecular and morphological characters, this dissertation is the first study to address the phylogenetics of the Libellulidae, the phylogenetics and historical biogeography of Sympetrum, and several species-level disputes within Sympetrum. Phylogenetic study of the family Libellulidae revealed that many of the libellulid subfamilies (Brachydiplactinae, Leucorrhininae, Sympetrinae, Trameinae, Trithemistinae, and Urothemistinae) were paraphyletic. Wing venation characters were not useful for delineating the hierarchy of taxa within Libellulidae. Study of the systematics of Sympetrum shows that S. navasi …

Comparative Genomic Analyses And Expression Of A Set Of Overlapping Open Reading Frames Of Frog Virus 3, Type Species Of Ranavirus (Family Iridoviridae), Wendy Guat Hoon Tan

Dissertations

Frog virus 3 (FV3) is the type species member of the genus Ranavirus (family Iridoviridae ). To better understand the molecular mechanisms involved in the replication of FV3, including transcription of its highly methylated DNA genome, the complete nucleotide sequence of the FV3 genome has been determined. The FV3 genome is 105, 903 base pairs long excluding the terminal redundancy. The G+C content of FV3 genome is 55% and it encodes 98 non-overlappingpotential open reading frames (ORFs) containing 50 to 1293 amino acids. Eighty-four ORFs have significant homology to known proteins of other iridoviruses, whereas 14 are unique FV3 ORFs. …

Predicting Liana Crown Location From Stem Diameter In Three Panamanian Lowland Forests, Brian P. Kurzel, Stefan A. Schnitzer, Walter P. Carson

Biological Sciences Faculty Research and Publications

In three forests that differed in annual rainfall and seasonality, the probability of a liana with a stem ≥2.0 cm stem diameter reaching the canopy was >50 percent. Lianas reached the canopy at significantly smaller size‐classes (1.5 cm) in the wet aseasonal forest, suggesting that this estimate changes with forest type. Nevertheless, as a general rule, we suggest that 2.0 cm is the minium stem diameter to examine the abundance and diversity of canopy lianas or canopy competition between lianas and trees.

Proceedings Of The Western Australian Dhufish Workshop 2004, Mark Pagano, Terry Fuller

Fisheries Occasional Publications

The Western Australian Dhufish Workshop 2004 was a joint project between Recfishwest and the Western Australian Department of Fisheries.

The workshop incorporated presentations from the Department of Fisheries, Recfishwest, the Western Australian Fishing Industry Council, Murdoch University and Challenger TAFE to showcase current knowledge relating to the iconic dhufish in Western Australia. The perspectives of a recreational fisher, a commercial wetline operator and a metropolitan charter boat operator were also presented.

Through information sharing and discussion the workshop provided a platform to better understand the fundamental issues that underpin current and future management arrangements for this valuable resource. Both commercial …

Integration Without Unification: An Argument For Pluralism In The Biological Sciences, Michael Dietrich, Sandra D. Mitchell

Dartmouth Scholarship

In this article, we consider the tension between unification and pluralism in biological theory. We begin with a consideration of historical efforts to establish a unified understanding of evolution in the neo-Darwinian synthesis. The fragmentation of the evolutionary synthesis by molecular evolution suggests the limitations of the general unificationist ideal for biology but not necessarily for integrating explanations. In the second half of this article, we defend a specific variety of pluralism that allows for the integration required for explanations of complex phenomena without unification on a large scale.

Cultivation Of Methanogens From Shallow Marine Sediments At Hydrate Ridge, Orego, Melissa Kendall, David R. Boone

Biology Faculty Publications and Presentations

Little is known about the methanogenic degradation of acetate, the fate of molecular hydrogen and formate or the ability of methanogens to grow and produce methane in cold, anoxic marine sediments. The microbes that produce methane were examined in permanently cold, anoxic marine sediments at Hydrate Ridge (44°35' N, 125°10' W, depth 800 m). Sediment samples (15 to 35 cm deep) were collected from areas of active methane ebullition or areas where methane hydrates occurred. The samples were diluted into enrichment medium with formate, acetate or trimethylamine as catabolic substrate. After 2 years of incubation at 4 °C to 15 …

Development Of Nicarbazin As A Reproductive Inhibitor For Resident Canada Geese, Kimberly S. Bynum, Christi A. Yonder, John D. Eisemann, John J. Johnston, Lowell A. Miller

Wildlife Damage Management Conference

Expanding populations of resident Canada geese that remain in suburban and urban areas year-round often result in increased conflicts with humans. Non-lethal and humane means are needed for managing the size of Canada goose flocks residing near or on airports, golf courses, industrial parks, government sites, and city parks. A side effect of nicarbazin, a veterinary drug used to control coccidiosis in chickens, is decreased egg production and hatching. Exploiting this side effect, studies of nicarbazin for reducing the hatchability of eggs from Canada geese were conducted. An initial study in Cotumix quail verified reduction in hatchability in a species …

Cell Wall Functions Required For Mating In Saccharomyces Cerevisiae, Stephen Dougherty

Renée Crown University Honors Thesis Projects - All

In order for two haploid yeast cells to undergo normal fusion during mating, adhesive contacts are formed by a general class of fungal proteins termed “adhesins”. Within this family there is a subgroup of cell wall proteins termed “agglutinins” which are known to mediate aggregation, thereby increasing mating efficiency in liquid medium (Aga1p, Aga2p, Aga1p). In the absence of sufficient mating adhesive contacts we observed that cells undergo defective morphogenesis, apparently continuing to grow at their tips after fusing at the expense of laterally expanding their conjugation bridge. Based on these qualitative observations, I utilized differential interference microscopy to capture …

The Biology Of Canadian Weeds. 131. Polygonum Aviculare L., Mihai Costea, François J. Tardif

Biology Faculty Publications

A review and assessment of biological information as well as personal data are provided for Polygonum aviculare in Canada. The species has been revised taxonomically and the six subspecies that occur in Canada are presented. Three of the subspecies, P. aviculare subsp. aviculare, P. aviculare subsp. neglectum and P. aviculare subsp. depressum are weeds introduced to Canada from Europe. A fourth subspecies, P. aviculare subsp. buxiforme is apparently native to North America. The geographical distribution of the latter four subspecies is very wide. Plants exhibit a high phenotypic plasticity and genetic variability, and they easily adapt to a multitude …

Antifungal Activity Of Camptothecin, Trifolin, And Hyperoside Isolated From Camptotheca Acuminata, Shiyou Li, Zhizhen Zhang, Abigail Cain, Bo Wang, Melissa Long, Josephine Taylor

Faculty Publications

Leaf spots and root rots are major fungal diseases in Camptotheca acuminata that limit cultivation of the plant for camptothecin (CPT), a promising anticancer and antiviral alkaloid. Bioassays showed that pure CPT and flavonoids (trifolin and hyperoside) isolated from Camptotheca effectively control fungal pathogens in vitro, including Alternaria alternata, Epicoccum nigrum, Pestalotia guepinii, Drechslera sp., and Fusarium avenaceum, although antifungal activity of these compounds in the plant is limited. CPT inhibited mycelial growth by approximately 50% (EC₅₀) at 10−30 μg/mL and fully inhibited growth at 75−125 μg/mL. The flavonoids were less effective than CPT …

Interspecific Competition For Pollination Lowers Seed Production And Outcrossing In Mimulus Ringens, John M. Bell, Jeffrey D. Karron, Randall J. Mitchell

Biology Faculty Research

Sympatric plant species with similar flowering phenologies and floral morphologies may compete for pollination, and as a consequence potentially influence each other's reproductive success and mating system. Two likely competitors are Mimulus ringens and Lobelia siphilitica, which co-occur in wet meadows of central and eastern North America, produce blue zygomorphic flowers, and share several species of bumble bee pollinators. To test for effects of competition for pollination, we planted experimental arrays of Mimulus ringens, each consisting of genets with unique combinations of homozygous marker genotypes. In two arrays we planted mixtures of Mimulus and Lobelia. and in two additional arrays …

Filarial Genomics, Steven A. Williams

Biological Sciences: Faculty Publications

No abstract provided.

The Yeast Rrna Biosynthesis Factor Ebp2p Is Also Required For Efficient Nuclear Division, Costin N. Ionescu, Sofia Origanti, Michael A. Mcalear

Biological Sciences Faculty Research and Publications

Molecular genetic analysis of the yeast Ebp2 protein has revealed that it is an essential, nucleolar protein that functions in the rRNA biosynthesis pathway. Temperature-sensitive ebp2-1 mutants are defective in the processing of the 27 SA precursor rRNA, and the point substitutions that disrupt this activity cluster towards the central, more highly conserved region of the Ebp2 protein. We report here that other ebp2 mutants exhibit deficiencies associated with defects in chromosome segregation. Yeast cells bearing a 50 amino acid C-terminal truncation allele (ebp2ΔC50) display a slow-growth phenotype and exhibit an increased percentage of cells with …

Life Cycle Of A Torrenticolous Hawaiian Chironomid (Telmatogeton Torrenticola): Stream Flow And Microhabitat Effects, M. Eric Benbow, Albert J. Burky, Carl M. Way

Biology Faculty Publications

In this study we documented the instar densities and life cycle of Telmatogeton torrenticola Terry (Chironomidae : Telmatogetoninae) from Kinihapai Stream, Maui, Hawaii. Greatest larval densities of this midge are found on substrates of high velocity, shallow flows of cascades, and splash zones of waterfalls, with lower densities in riffles. In the summer of 1994 we compared the effects of two microhabitats (termed optimal and suboptimal) on inter-instar density and relative abundance. In a second year (1995), we evaluated the effect of long-term reduced stream flow on these variables only in optimal microhabitats. A significant reduction in stream flow from …

Examination Of Estimated 24 Hour Period Of Dendritic Cell Maturation, Sarah Reeves

Capstone Research Projects

Dendritic cells (DCs) are responsible for antigen uptake, presentation, and stimulation of T cells responsible for recognizing these antigens. During the immature stage DCs endocytose fluids and particles from the surrounding interstitial environment, such as the skin, deeper organs, and mucous membranes. Maturity is reached after antigen uptake stimulates the loading of foreign peptides on their major histocompatibility complex class II (MHC II) molecules, which then are expressed on the cell surface. DCs cease antigen uptake and presentation at some point after the uptake of a maturation stimulus (antigen); at this point the DC is fully mature. It has been …

Life Cycle Of A Torrenticolous Hawaiian Chironomid (Telmatogeton Torrenticola): Stream Flow And Microhabitat Effects, Mark Eric Benbow, Albert J. Burky, C. M. Way

Biology Faculty Publications

In this study we documented the instar densities and life cycle of Telmatogeton torrenticola Terry (Chironomidae : Telmatogetoninae) from Kinihapai Stream, Maui, Hawaii. Greatest larval densities of this midge are found on substrates of high velocity, shallow flows of cascades, and splash zones of waterfalls, with lower densities in riffles. In the summer of 1994 we compared the effects of two microhabitats (termed optimal and suboptimal) on inter-instar density and relative abundance. In a second year (1995), we evaluated the effect of long-term reduced stream flow on these variables only in optimal microhabitats. A significant reduction in stream flow from …

The Reactive Genome, Scott F. Gilbert

Biology Faculty Works

No abstract provided.

Microscale Patchiness Of Bacterioplankton Assemblage Richness In Seawater, Richard A. Long, Farooq Azam

Faculty Publications

We sought to test the hypothesis that bacterial species richness and composition vary at the millimeter scale in the marine pelagic environment, in response to the heterogeneous distribution of organic matter. To test this hypothesis, it was necessary to design and test a protocol to sample, lyse and analyze (by polymerase chain reaction/denaturing gradient gel electrophoresis [PCR-DGGE]) bacterioplankton species richness in a single microliter of seawater. Significant variation in bacterial species richness was found amongst 1 μl samples. Greater species richness was seen when seawater was enriched with diatom detritus. Examination of species richness at 2 mm intervals over a …

Variations In Bacterial Community Structure During A Dinoflagellate Bloom Analyzed By Dgge And 16s Rdna Sequencing, Laura B. Fandino, Lasse Riemann, Grieg F. Steward, Richard A. Long, Farooq Azam

Faculty Publications

The relationship between bacterial 16S rRNA gene composition and carbon metabolism was analyzed during an intense dinoflagellate bloom off the Southern California coast during the spring of 1997. Bacterial numbers and rate processes, chlorophyll a, and the dissolved and particulate organic matter pools were measured during the bloom to provide a framework within which to assess bacterial community composition. Free bacteria were numerically dominant, generally comprising >90% of the total, and were responsible for >70% of bacterial production. Attached bacteria had higher cell-specific growth rates than free bacteria (range = 0.5 to 15.1 and 0.7 to 2.5 d^{-1 …}

Rationale For A Focus On Biomphalaria Glabrata, Coen M. Adema, Eric S. Loker, Fred Lewis, Matty Knight

Biomphalaria Genome Initiative

No abstract provided.

Fisheries Research Report No. 121 - Synopsis Of The Biology And Exploitation Of The Blue Swimmer Crab, Portunus Pelagicus Linnaeus, In Western Australia, Mervi I. Kangas

Fisheries Research Reports

This report summarises the existing studies which have provided information on the biology, population characteristics and exploitation of the blue swimmer crab, Portunus pelagicus, in Western Australia. Gaps in the existing knowledge are also highlighted to assist in targeting new research initiatives. Portunus pelagicus matures at about one year and in temperate regions females mate only once a year. This is because mature crabs moult only once a year. It appears from studies to date that Western Australian crabs are one genetic population. This is being further investigated. Migration of the blue swimmer crab occurs between estuaries and the ocean …

The Effects Of Tactile/Kinesthetic Instructional Strategies In The Biology Classroom, Janice Batten Sees

Theses and Dissertations

The purpose of this study was to determine whether the addition of tactile/kinesthetic instruction to the biology classroom could significantly increase learning. Various kinds of tactile/kinesthetic lessons were taught to three experimental groups who also received visual and auditory instruction. These tactile/kinesthetic lessons included task cards, task puzzles, manipulatives, total body movement, and large floor games. The control group only received visual and auditory instruction. The subjects were 84 College Biology students from Buena Regional High School, a school in rural South Jersey. The classes varied in gender and race. The same instructor taught all classes and the length of …

Use Of Baculovirus As Expression Vector In Biotechnology, Zihni Demi̇rbağ, A. Osman Beldüz, İsmail Demi̇r

Turkish Journal of Biology

Variuos viral, bacterial, plant and animal proteins which are important for medicinal, industrial and agricultural aspects, have been synhesized via expression vector systems have great importance in biotechnology. Baculoviruses, used as a good model system in molecular biology studies, a biological control agent in agriculture and an expression vector for synthesis of important proteins, opened up a significant period for recombinant DNA technology and protein production. Desired foreign genes, code for various products such as drug, toxin and nutrient substances, can be replaced with viral genes which are not essasial for replication of baculovirus in cell culture. Priority and advantages …

Analysis Of The Inheritance Repression Of A Transposable Element In Drosophila Melanogaster, Melissa Leone

Master's Theses

No abstract provided.

A Scanning Electron Microscopy Study Of Taxus Leaves As Related To Taxonomy, G.A. Strobel, W. M. Hess

Scanning Microscopy

Scanning electron microscopy, when applied to the surfaces of the needles of Taxus spp. (yew) revealed features that appear useful in the taxonomy of this tree species which yields the important anticancer drug, taxol. For instance, all of the four North American species have 3-5 rows of stomata on one-half of the abaxial leaf surface, whereas all of the others, including those from Europe and Asia, have 7-10 rows of stomata. The appearance of individual or fused papilliform epidermal cells and their arrangement on the leaf surface also is a feature that varies between species. Patterns of wax formation appeared …