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The Influences Of Green Infrastructure On Levels Of Somatic And Male-Specific Coliphages At Shadyside Park, Oula Salih Jan 2020

The Influences Of Green Infrastructure On Levels Of Somatic And Male-Specific Coliphages At Shadyside Park, Oula Salih

Student Papers and Reports

Microbial contamination is still considered one of the major causes of diminished function and quality of urban rivers and streams in Michigan. Floodplains, a type of green infrastructure used to reduce flooding after large amounts of rainfall, were reported to have variable effects of reducing levels of stormwater runoff within these bodies of water ( Hubbart et al., 2011 ). Viral indicators of fecal contamination in bodies of water include male-specific and somatic coliphages. Water samples from Plaster Creek were collected before and after the floodplain in order to identify the levels of somatic and male-specific coliphages during dry and …


A Method For Removing Eggs Or Embryos From Preserved, Gravid Snakes That Minimizes Damage To Museum Specimens, Christopher Sheil, Luke J. Welton Jan 2020

A Method For Removing Eggs Or Embryos From Preserved, Gravid Snakes That Minimizes Damage To Museum Specimens, Christopher Sheil, Luke J. Welton

2020 Faculty Bibliography

No abstract provided.


A Spatiotemporal Assessment Of Dietary Partitioning Between Color Morphs Of A Terrestrial Salamander, Maggie M. Hantak, Kyle M. Brooks, Cari-Ann M. Hickerson, Carl D. Anthony, Shawn R. Kuchta Jan 2020

A Spatiotemporal Assessment Of Dietary Partitioning Between Color Morphs Of A Terrestrial Salamander, Maggie M. Hantak, Kyle M. Brooks, Cari-Ann M. Hickerson, Carl D. Anthony, Shawn R. Kuchta

2020 Faculty Bibliography

When color pattern variation is co-adapted with other biological features, distinct color morphs may be separated along divergent niche axes, and data on niche partitioning can provide insight into how distinct color morphs are maintained over spatiotemporal scales. The Eastern Red-backed Salamander, Plethodon cinereus, contains two common color morphs (striped and unstriped) that differ along several trait axes in addition to coloration. Previous studies from a single population have suggested that dietary composition represents an important axis of ecological differentiation between morphs of P. cinereus. To determine if morphs partition prey resources over space and time, we collected stomach contents …


Female Salamanders Experience Higher Parasitism Compared To Males: A Cost Of Female Reproduction?, Matthew D. Venesky, Joseph Alan Demarchi, Rachel Marbach, Keva Periyar, Cari-Ann M. Hickerson, Carl D. Anthony Jan 2020

Female Salamanders Experience Higher Parasitism Compared To Males: A Cost Of Female Reproduction?, Matthew D. Venesky, Joseph Alan Demarchi, Rachel Marbach, Keva Periyar, Cari-Ann M. Hickerson, Carl D. Anthony

2020 Faculty Bibliography

Males tend to experience higher rates of parasitism compared to females, a phenomenon associated with ecological factors, the fact that males engage in risky behaviors, and because testosterone is known to be immunosuppressive. However, females could experience higher rates of parasitism if energy is allocated from costly immune responses towards producing eggs. We used pooled data sets from laboratory experiments to investigate sex-specific differences in salamander (Plethodon cinereus) resistance to the emerging fungal pathogen Batrachochytrium dendrobatidis (‘‘Bd’’). Contrary to our predictions, we found that female salamanders had a higher prevalence of infection (~56%) and carried a higher Bd infection burden …


Chemical Defenses Shift With The Seasonal Vertical Migration Of A Panamanian Poison Frog, Edmund W. Basham, Ralph Saporito, Marcario González-Pinzón, Angel Romero-Marcucci, Brett R. Sheffers Jan 2020

Chemical Defenses Shift With The Seasonal Vertical Migration Of A Panamanian Poison Frog, Edmund W. Basham, Ralph Saporito, Marcario González-Pinzón, Angel Romero-Marcucci, Brett R. Sheffers

2020 Faculty Bibliography

Dendrobatid poison frogs sequester lipophilic alkaloids from their arthropod prey to use as a form of chemical defense. Some dendrobatid frogs seasonally migrate between the leaf litter of the forest floor in the dry season to the canopy in the wet season, which may yield differences in prey (arthropods) and therefore alkaloid availability over space and time. Here, we document a seasonal vertical migration of Andinobates fulguritus (the yellow-bellied poison frog) from ground to canopy between dry and wet seasons. We observed turnover in alkaloid composition between seasons and found that dry season frogs contained a lower relative quantity of …


Support For The Habitat Amount Hypothesis From A Global Synthesis Of Species Density Studies, James I. Watling, Rebecca Fang Jan 2020

Support For The Habitat Amount Hypothesis From A Global Synthesis Of Species Density Studies, James I. Watling, Rebecca Fang

2020 Faculty Bibliography

Decades of research suggest that species richness depends on spatial characteristics of habitat patches, especially their size and isolation. In contrast, the habitat amount hypothesis predicts that (1) species richness in plots of fixed size (species density) is more strongly and positively related to the amount of habitat around the plot than to patch size or isolation; (2) habitat amount better predicts species density than patch size and isolation combined, (3) there is no effect of habitat fragmentation per se on species density and (4) patch size and isolation effects do not become stronger with declining habitat amount. Data on …


Geographic Variation In Agonistic And Territorial Behavior By Genetically Distinct Groups Of The Eastern Red-Backed Salamander (Plethodon Cinereus), Jessica Ryan Jan 2020

Geographic Variation In Agonistic And Territorial Behavior By Genetically Distinct Groups Of The Eastern Red-Backed Salamander (Plethodon Cinereus), Jessica Ryan

Masters Theses

Geographic variation in agonistic and territorial behavior is largely unknown in terrestrial plethodontid salamanders, even though territoriality is widespread throughout this group. Using the color polymorphic Eastern Red-backed Salamander (Plethodon cinereus), I compared the aggressive and submissive behaviors of two genetically distinct groups in northern Ohio using male and female salamanders from six populations. As in other populations of P. cinereus studied, I expected to find agonistic and territorial behavior present in the populations in this study. Additionally, I predicted that the genetic group that is monomorphic for the striped morph would exhibit a higher degree of agonistic and territorial …


Lifelines Winter 2020, Southern Adventist University Jan 2020

Lifelines Winter 2020, Southern Adventist University

Lifelines - Biology Department Newsletter

The Winter 2020 issue of Lifelines contains articles on students in service, insights from the professor, and departmental happenings.


Rodent Seed Preference Trials Of Ecologically Important Plants In Kentucky, Katelyn Thomason Jan 2020

Rodent Seed Preference Trials Of Ecologically Important Plants In Kentucky, Katelyn Thomason

Mahurin Honors College Capstone Experience/Thesis Projects

Seed predation is an important ecological process that can affect the success of individual plants and plant populations as a whole. However, seed preferences of herbivores have received little detailed attention in comparison to seedling predation studies (Hulme, 1994). In this project I researched how rodents, specifically their seed preferences, affect the recruitment and survival of ecologically important native plants in Western Kentucky. I used traps to catch Peromyscus leucopus (white-footed mice). Once caught, each mouse was placed in a trial arena with seeds from Silphium perfoliatum (cup plant), Baptisia australis (blue false indigo), Silphium lanciniatum (compass plant), and the …


Identifying Essential Viral Genes Through Genomic Engineering, Amber Carroll Jan 2020

Identifying Essential Viral Genes Through Genomic Engineering, Amber Carroll

Mahurin Honors College Capstone Experience/Thesis Projects

Bacteria developed resistance to penicillin a mere four years after the groundbreaking antibiotic was first mass produced (Casadevall, 2010). Since then, the development of antibiotic-resistant bacteria has steadily risen, causing millions of difficult to treat infections annually. The challenge is to identify ways to combat these menacing microbes. Bacteriophages are viruses that infect bacteria and can potentially be used to eliminate deadly antibiotic-resistant bacteria. The number of sequenced bacteriophage genomes has increased tremendously over the past 10 years, but little is known about the function of most bacteriophage genes. The purpose of this study was to expand our understanding of …


Ototoxicity Of Cisplatin, Pyriplatin, And Phenathriplatin In The Auditory Hybridoma Cell Line, Hei-Oc1, Alexandra Johnston Jan 2020

Ototoxicity Of Cisplatin, Pyriplatin, And Phenathriplatin In The Auditory Hybridoma Cell Line, Hei-Oc1, Alexandra Johnston

Mahurin Honors College Capstone Experience/Thesis Projects

Cisplatin is an anti-cancer drug which is effective against several cancers, but also causes harmful side-effects, including ototoxicity and hearing loss. While cisplatin is a bifunctional compound that forms coordinate covalent bonds with both strands of DNA, recently investigated monofunctional platinum(II) compounds bind to only one DNA strand, and may activate different cell-death mechanisms. As several monofunctional platinum(II) compounds have anti-cancer properties, but could target different cell-death pathways, they could potentially have different and reduced side-effects. In this study, the HEI-OC1 auditory hybridoma cell line was used to investigate the ototoxicity of cisplatin and two monofunctional platinum(II) compounds, phenanthriplatin and …


Morphological Correlates Of Auditory Sensitivity In The Inner Ear Of Two Species Of Invasive Carp, Tyler Patty Jan 2020

Morphological Correlates Of Auditory Sensitivity In The Inner Ear Of Two Species Of Invasive Carp, Tyler Patty

Mahurin Honors College Capstone Experience/Thesis Projects

Silver (Hypopthalmichthys molitrix) and bighead (H. nobilis) carp, are invasive species that have negative impacts upon ecosystems. H. molitrix is known to jump completely out of the water in response to broadband sounds, however, this is not observed in H. nobilis. Preliminary experiments reveal that sounds can be used to modify the behavior of carps. Thus, understanding the hearing abilities of these species is important in order to design appropriate acoustical deterrents. Fish heads were preserved in 4% paraformaldehyde and the inner ears dissected and photographed under a light microscope in order to describe the …


Use And Partitioning Of Riparian Corridors By Mammalian Carnivores In Rio Mora National Wildlife Refuge, Armando Toral Becker Jan 2020

Use And Partitioning Of Riparian Corridors By Mammalian Carnivores In Rio Mora National Wildlife Refuge, Armando Toral Becker

Regis University Student Publications (comprehensive collection)

Land conversion across the Southwestern U.S. for agricultural and livestock use and prolonged drought conditions cascade to reduce ecosystem function, including habitat provision for wildlife. Arroyo restoration efforts aim to improve wildlife habitat by decreasing soil erosion and enhancing water retention. These hydrologic and geomorphic changes increase the likelihood that wildlife use restored corridors by increasing riparian vegetation cover. Rio Mora National Wildlife Refuge (RMNWR) has restored several arroyos by installing a system of one-rock dams throughout the refuge, but the extent to which mammals prefer restored over unrestored riparian corridors and how habitat structure influences mammalian use and density …


The Importance Of Understanding Trophic Transfer In Top Marine Predators Due To An Increase In Plastic Production, Annika M. Markovich Jan 2020

The Importance Of Understanding Trophic Transfer In Top Marine Predators Due To An Increase In Plastic Production, Annika M. Markovich

Scientific Communication News

No abstract provided.


Thirty Years Of Data Sheds Light On Plastic Pollution In The Deep Sea, Adam Warren Jan 2020

Thirty Years Of Data Sheds Light On Plastic Pollution In The Deep Sea, Adam Warren

Scientific Communication News

No abstract provided.


Dolphin Study Gives Insight Into Marine Mammal Threat Response, Marshall Hawkins Jan 2020

Dolphin Study Gives Insight Into Marine Mammal Threat Response, Marshall Hawkins

Scientific Communication News

No abstract provided.


Gene Duplication And Deletion, Not Horizontal Transfer, Drove Intra-Species Mosaicism Of Bartonella Henselae, Rachana Banerjee, Oshina Shine, Vyshakh Rajachandran, Govind Krishnadas, Michael F. Minnick, Sandip Paul, Sujay Chattopadhyay Jan 2020

Gene Duplication And Deletion, Not Horizontal Transfer, Drove Intra-Species Mosaicism Of Bartonella Henselae, Rachana Banerjee, Oshina Shine, Vyshakh Rajachandran, Govind Krishnadas, Michael F. Minnick, Sandip Paul, Sujay Chattopadhyay

Biological Sciences Faculty Publications

Bartonella henselae is a facultative intracellular pathogen that occurs worldwide and is responsible primarily for cat-scratch disease in young people and bacillary angiomatosis in immunocompromised patients. The principal source of genome-level diversity that contributes to B. henselae's host-adaptive features is thought to be horizontal gene transfer events. However, our analyses did not reveal the acquisition of horizontally-transferred islands in B. henselae after its divergence from other Bartonella. Rather, diversity in gene content and genome size was apparently acquired through two alternative mechanisms, including deletion and, more predominantly, duplication of genes. Interestingly, a majority of these events occurred in regions that …


Cellular And Organismal Ramifications Of De Novo Purine Synthesis Dysregulation, Randall Craig Mazzarino Jan 2020

Cellular And Organismal Ramifications Of De Novo Purine Synthesis Dysregulation, Randall Craig Mazzarino

Electronic Theses and Dissertations

Purines are a class of nitrogenous bases and are essential small molecules to life. Purines are used within the cell as genetic information carriers, energy currency, signaling molecules, and cofactors for multiple processes. They are formed through de novo and salvage pathways found in cells across the phylogenetic tree. The substrates of enzymes within de novo purine synthesis are known to influence other processes within the cell, such as energy homeostasis. In humans, de novo purine synthesis disorders are rare, with around 100 people identified. These patients exhibit a range of phenotypes, with varying degrees of mental retardation, seizure activity, …


Biosafety And Biosecurity Approaches To Restrain/Contain And Counter Sars-Cov-2/Covid-19 Pandemic: A Rapid-Review, Tauseef Ahmad, Haroon Haroon, Kuldeep Dhama, Khan Sharun, Fazal Mehmood Khan, Irfan Ahmed, Ruchi Tiwari, Taha Hussein Musa, Muhammad Khan, D. Katterine Bonilla-Aldana, Alfonso J. Rodriguez-Morales, Jin Hui Jan 2020

Biosafety And Biosecurity Approaches To Restrain/Contain And Counter Sars-Cov-2/Covid-19 Pandemic: A Rapid-Review, Tauseef Ahmad, Haroon Haroon, Kuldeep Dhama, Khan Sharun, Fazal Mehmood Khan, Irfan Ahmed, Ruchi Tiwari, Taha Hussein Musa, Muhammad Khan, D. Katterine Bonilla-Aldana, Alfonso J. Rodriguez-Morales, Jin Hui

Turkish Journal of Biology

Emergence and reemergence of infectious diseases pose significant public health risks that are continuously haunting human civilization in the past several decades. Such emerging pathogens should be considered as a high threat to humans, animals, and environmental health. The year 2020 was welcomed by another significant virus from family Coronaviridae called severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that caused the coronavirus disease 2019 (COVID-19). The disease was first reported in the city of Wuhan, Hubei province, China. Within a short time, this disease attained the status of the Public Health Emergency of International Concern. Presently, COVID-19 has spread to …


Advancements In Vaccine Development: Measles Vs. Covid-19, Sarah Ziegler Jan 2020

Advancements In Vaccine Development: Measles Vs. Covid-19, Sarah Ziegler

The Science Journal of the Lander College of Arts and Sciences

As an ever-progressing field of study, vaccine development has made headway over the past decades. By doing a comparative study between development of the measles vaccine in the mid-20th century, and the ongoing development of the COVID-19 vaccine in 2020, many of the insights and advancements in the field can be easily highlighted. First, the knowledge and experience gained over those decades has helped the vaccine developing process become more efficient. With more vaccines in production, or at least under study, it is more likely to have a related precedent to build upon, as opposed to relying on a successful …


What Role Does Age-Associated Neuroplasticity Play In The Efficacy Of Cochlear Implantation?, Jacob Fliegelman Jan 2020

What Role Does Age-Associated Neuroplasticity Play In The Efficacy Of Cochlear Implantation?, Jacob Fliegelman

The Science Journal of the Lander College of Arts and Sciences

Bilateral, profound-severe, congenital deafness causes widespread structural and functional changes of the auditory system. In humans, the consequences of these changes are extensive and often include detriments to language acquisition and auditory perception. Fortunately, early intervention methods, such as cochlear implantation, can significantly mitigate inevitable auditory deficiencies. This review begins by briefly addressing early stages of brain development and associated anatomical discrepancies observed in congenitally deaf subjects. Considering the deleterious effects of congenital deafness, neuroplasticity, the ability of the brain to rewire itself, is of paramount importance in reversing the auditory impairments. Hence, its incorporation into the methods required for …


Characterization Of The Immune Response To Anti-Mullerian Hormone, Justin M. Johnson Jan 2020

Characterization Of The Immune Response To Anti-Mullerian Hormone, Justin M. Johnson

ETD Archive

Anti-Mullerian hormone (AMH) has been known since the mid-twentieth century as the substance secreted by the testes of the male fetus that is responsible for directing the proper development of the male reproductive organs from the primordial structures that would otherwise become the uterus and fallopian tubes. However, despite its longknown significance in male development, only recently has its importance in the adult female become evident. AMH is now considered to be not only a clinical indicator of the finite ovarian egg supply, but a vital regulator thereof throughout the reproductive life of the female. Dysfunctions in AMH regulation may …


Revision Of The Genus Styxosaurus And Relationships Of The Late Cretaceous Elasmosaurids (Sauropterygia: Plesiosauria) Of The Western Interior Seaway, Elliott Armour Smith Jan 2020

Revision Of The Genus Styxosaurus And Relationships Of The Late Cretaceous Elasmosaurids (Sauropterygia: Plesiosauria) Of The Western Interior Seaway, Elliott Armour Smith

Theses, Dissertations and Capstones

Growing evidence indicates that elasmosaurid plesiosaurs from the Late Cretaceous Western Interior Seaway are members of a single clade, the Styxosaurinae. The styxosaurines are reported to be mostly Campanian in age, and taxa within the clade obtain the longest necks, by number of cervical vertebrae, of any known vertebrate. The styxosaurines are morphologically diverse and include taxa that exhibit a secondary reduction in neck length. Given the evolutionary plasticity of postcranial characters in plesiosaurs in general, and neck length in elasmosaurs, scrutiny of cranial osteology is pertinent to advancing understanding of Western Interior Seaway elasmosaurids. This study finds that an …


Water In Your Neighbourhood: A Model For Implementing A Semester-Long Course-Based Undergraduate Research Project In Introductory Biology, Ana Lucia Fuentes, Maria Entezari Jan 2020

Water In Your Neighbourhood: A Model For Implementing A Semester-Long Course-Based Undergraduate Research Project In Introductory Biology, Ana Lucia Fuentes, Maria Entezari

Publications and Research

Undergraduate biology education has changed over the past decade, incorporating an iterative and evidence-based approach. Many educational assessments have confirmed the effectiveness of integrating authentic research and open-ended inquiry into introductory biology courses, demonstrating a significant positive impact on students’ learning and attitude towards STEM majors. Despite these findings, only a handful of Biology instructors in 2-year colleges adopt this approach, and when adopted, most activities constitute a small fraction of these courses. Finding a feasible, sustainable, semester-long, and cost-effective strategy to incorporate authentic research in the curriculum which promotes integrated understanding of science and addresses socio-scientific issues, is a …


Seen In Science: Lgbtq+ Inclusivity In Anatomy & Physiology Texts, Harshini Sirvisetty, Kat Ray King, Linda Catherine Fuselier Jan 2020

Seen In Science: Lgbtq+ Inclusivity In Anatomy & Physiology Texts, Harshini Sirvisetty, Kat Ray King, Linda Catherine Fuselier

Undergraduate Arts and Research Showcase

Biology is unique from other science disciplines in that concepts taught in core classes can inform our student’s understanding of sex and gender. A biology major encounters lessons on sex determination, sexual reproduction, and sex characteristics in their courses. The language used in these units matters. It is imperative that educators consider how the language, examples, and content that we use in classrooms drive (or not) inclusivity for gender- and sexuality-diverse (GSD) (aka LGBTQ+) individuals. We chose to analyze four college-level human anatomy/physiology (AP) textbooks for GSD population inclusivity. We adopted a queer theory framework to critically examine how sex, …


Graphic Novels In Biology – A Novel Assessment Idea, Sowmya Anjur Jan 2020

Graphic Novels In Biology – A Novel Assessment Idea, Sowmya Anjur

Faculty Publications & Research

Galileo once said, “You cannot teach a man anything, you can only help him find it within himself.” (Goodreads, 2020). I have often pondered upon how best I could use this advice. I have been an educator for 24 years and have loved every minute of it. During this time, I have seen students of all cadres come and go, but they all have one thing in common - their innate fear of written assessments. In general, students in high school tend to have a different perspective on education than their adult counterparts - they tend to procrastinate, are usually …


Hiding In Plain Sight: The Globally Distributed Bacterial Candidate Phylum Pauc34f, Michael L. Chen, Eric D. Becraft, Maria Pachladaki, Julia M. Brown, Jessica K. Jarett, Josep M. Gasol, Nikolai V. Ravin, Duane P. Moser, Takuro Nunoura, Gerhard J. Herndl, Tanja Woyke, Ramunas Stepanauskas Jan 2020

Hiding In Plain Sight: The Globally Distributed Bacterial Candidate Phylum Pauc34f, Michael L. Chen, Eric D. Becraft, Maria Pachladaki, Julia M. Brown, Jessica K. Jarett, Josep M. Gasol, Nikolai V. Ravin, Duane P. Moser, Takuro Nunoura, Gerhard J. Herndl, Tanja Woyke, Ramunas Stepanauskas

Biology

Bacterial candidate phylum PAUC34f was originally discovered in marine sponges and is widely considered to be composed of sponge symbionts. Here, we report 21 single amplified genomes (SAGs) of PAUC34f from a variety of environments, including the dark ocean, lake sediments, and a terrestrial aquifer. The diverse origins of the SAGs and the results of metagenome fragment recruitment suggest that some PAUC34f lineages represent relatively abundant, free-living cells in environments other than sponge microbiomes, including the deep ocean. Both phylogenetic and biogeographic patterns, as well as genome content analyses suggest that PAUC34f associations with hosts evolved independently multiple times, while …


Metaphors For A New Body Politic: Gaia As Holobiont, Scott F. Gilbert Jan 2020

Metaphors For A New Body Politic: Gaia As Holobiont, Scott F. Gilbert

Biology Faculty Works

No abstract provided.


Toward A Symbiotic Perspective On Public Health: Recognizing The Ambivalence Of Microbes In The Anthropocene, S. Sariola, Scott F. Gilbert Jan 2020

Toward A Symbiotic Perspective On Public Health: Recognizing The Ambivalence Of Microbes In The Anthropocene, S. Sariola, Scott F. Gilbert

Biology Faculty Works

Microbes evolve in complex environments that are often fashioned, in part, by human desires. In a global perspective, public health has played major roles in structuring how microbes are perceived, cultivated, and destroyed. The germ theory of disease cast microbes as enemies of the body and the body politic. Antibiotics have altered microbial development by providing stringent natural selection on bacterial species, and this has led to the formation of antibiotic-resistant bacterial strains. Public health perspectives such as “Precision Public Health” and “One Health” have recently been proposed to further manage microbial populations. However, neither of these take into account …


Ticks On Lizards: Parasite-Host Interactions Of The Southern Alligator Lizard (Elgaria Multicarinata) In Washington State, Emma Houghton Jan 2020

Ticks On Lizards: Parasite-Host Interactions Of The Southern Alligator Lizard (Elgaria Multicarinata) In Washington State, Emma Houghton

Undergraduate Honors Theses

I investigated interactions between ectoparasites (ticks) and their host, the southern alligator lizard (Elgaria multicarinata). Alligator lizards are capable of complement-mediated killing of the Lyme disease spirochete carried by ticks and may potentially reduce Lyme disease prevalence by cleansing pathogenic organisms from ticks. Despite this, little is known about host-parasite dynamics in alligator lizards. My goals were to 1) assess patterns of tick presence (i.e. parasite load) on alligator lizards and 2) investigate potential negative effects of ticks on alligator lizards. I sampled lizards during the summer of 2019 near Catherine Creek, along the Columbia River Gorge in southern Washington. …