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From Aristotle To Wunderkammer: The Development Of Entomology And Insect Collections, Erica Fischer

Honors Projects

This project aimed to analyze the development of insect classification and the shift from the realm of the amateur naturalist to professional science. It looked to address questions regarding entomology as a developing science and how effectively it reflects larger changes in the field of biology and the development of natural history collections. This work was for a synthesis of time periods from the beginnings of classification in the ancient world through the 20th century, a more general timeline than is typically approached. The research needed for the completion of this paper was based on secondary source research in the …

Interactions Of Deet And Novel Repellents With Mosquito Odorant Receptors, Gariel G. Grant, Rachel R. Estrera, Narendra Pathak, C. Dennis Hall, Maia Tsikolia, Kenneth J. Linthicum, Ulrich R. Bernier, Adam C. Hall

Neuroscience: Faculty Publications

The carboxamide N,N-di-ethyl-meta-Toluamide (DEET) is the most effective and widely used insect repellent today. However, drawbacks concerning the efficacy and the safety of the repellent have led to efforts to design new classes of insect repellents. Through quantitative structure-Activity relationships, chemists have discovered two chemical groups of novel repellents: The acylpiperidines and the carboxamides, with the acylpiperidines generally more potent in biological assays. Although the exact mechanism of action of DEET and other repellents has not yet been thoroughly elucidated, previous research shows that the activity of insect odorant receptors are inhibited in the presence of repellents. The present electrophysiological …

Light And Temperature Mediate Algal Simulation Of Heterotrophic Activity On Decomposing Leaf Litter, Cody A. Pope, Halvor M. Halvorson, Robert H. Findlay, Steven N. Francoeur, Kevin A. Kuehn

Faculty Publications

1. Recent evidence suggests that periphytic algae stimulate plant litter heterotrophs (fungi and bacteria) in the presence of light, but few studies have tested whether this stimulation varies across gradients of light, which may covary with temperature.
2. We exposed field‐conditioned Typha domingensis litter to fully‐crossed, short‐term gradients of temperature (15, 20, 25, and 30°C) and light (0, 25, 53, 123, and 388 µmol quanta m⁻² s⁻¹) and measured responses of litter‐associated algal, fungal, and bacterial production rates and β‐glucosidase, β‐xylosidase, and phenol oxidase enzyme activities in the laboratory.
3. Increased light stimulated algal production rates, from immeasurable production under …

Enzymatic In-Situ Transesterification Of Neutral Lipids From Simulated Wastewater Cultured Chlorella Emersonii And Pseudokirchneriella Subcapitata To Sustainably Produce Fatty Acid Methyl Esters, Priyanka Priyanka, Gemma K. Kinsella, Gary Henehan, Barry J. Ryan

Articles

Alternative, more sustainable and environmentally positive, sources of energy are one of the current global challenges. One approach to achieving more sustainable sources of energy is to use waste from one system as a raw material for energy production, following the circular biosystem philosophy. This study successfully adopted this approach whereby microalgae strains Chlorella emersonii and Pseudokirchneriella subcapitata were bioprospected and metabolically engineered in simulated wastewater supplemented with glucose to produce neutral lipids. Using a two-step cultivation approach neutral lipid content was enhanced in Chlorella emersonii and Pseudokirchneriella subcapitata biomass. Via in-situ transesterification, these neutral lipids were subsequently bioconverted to …

Isolation And Characterization Of Bacteriophages Infecting Enterobacter Cloacae To Reduce Bloater Defect In Cucumber Fermentations, Samantha Thompson

Master of Science in Integrative Biology Theses

Fermented cucumbers are one of the most important fermented vegetables consumed worldwide. During cucumber fermentations, certain undesirable changes may occur. One of such changes is known as bloater defect (hollow cavities in fermented cucumbers), which is primarily caused by gas-producing bacteria including Enterobacter cloacae. Bloater defect lowers product quality and leads to significant economic loss to the pickle industry, and effective preventative methods are needed. Bacteriophages (phages) are highly host-specific bacteria killers. Use of phages to control unwanted bacteria in foods is a promising approach because phages do not change food properties. The goals of this research were to …

Inactivation Of Hippo And Cjun-N-Terminal Kinase (Jnk) Signaling Mitigate Fus Mediated Neurodegeneration In-Vivo, Ankita Sarkar, Abijeet Singh Mehta, Prajakta Deshpande, Madhuri Kango-Singh, Udai Bhan Pandey, Amit Singh

Biology Faculty Publications

Amyotrophic Lateral Sclerosis (ALS), a late-onset neurodegenerative disorder characterized by the loss of motor neurons in the central nervous system, has no known cure to-date. Disease causing mutations in human Fused in Sarcoma (FUS) leads to aggressive and juvenile onset of ALS. FUS is a well-conserved protein across different species, which plays a crucial role in regulating different aspects of RNA metabolism. Targeted misexpression of FUS in Drosophila model recapitulates several interesting phenotypes relevant to ALS including cytoplasmic mislocalization, defects at the neuromuscular junction and motor dysfunction. We screened for the genetic modifiers of human FUS-mediated neurodegenerative phenotype using molecularly …

Plasticity Of Least Tern And Piping Plover Nesting Behaviors In Response To Sand Temperature, Alicia K. Andes, Mark H. Sherfy, Terry L. Shaffer, Susan N. Ellis-Felege

Biology Faculty Publications

Birds that nest on the ground in open areas, such as Piping Plovers (Charadrius melodus) and Interior Least Terns (Sternula antillarum athalassos), are exposed to high temperatures in thermally stressful environments. As a result, some ground-nesting avian species have adapted behavioral strategies to maintain thermal regulation of eggs and themselves. We assessed the impact of sand temperature on shorebird nesting behaviors by installing video cameras and thermocouples at 52 Least Tern and 55 Piping Plover nests on the Missouri River in North Dakota during the 2014–2015 breeding seasons. Daily duration and frequency of shading behaviors exhibited …

Insect Mediated Species Interactions: Examining Methods To Improve Artificial Buzz Pollination And Testing The Effects Of Plant Based Bioactive Compounds On Herbivore Life-History Traits, Mandeep Tayal

Theses and Dissertations

Pollination and herbivory are two major interactions in insect-plant ecology. Specialized pollination systems such as buzz pollination where pollen grains have to be extracted by bees with special thoracic vibrations and indirect flight muscles, is observed in ~6% of all flowering plants. Breeding and research programs in these species demand artificial pollination, but natural buzz pollinators are unreliable for this purpose. To find an alternative, we tested the pollen extraction efficiency of using inexpensive electric toothbrush over tuning fork (another commonly used device) in two buzz-pollinated species (Tomato and Silverleaf nightshade) at different buzzing frequencies and multiple buzzing time intervals. …

Characterizing The Mechanisms Of Ectopic Expression Of Dream Complex Target Genes And The Hta Phenotype In C. Elegans, Jerrin Roy Cherian

Dissertations (1934 -)

It is important for organisms to establish and maintain proper gene expression for normal growth and development. In C. elegans, the DREAM repressor complex helps maintain proper gene expression in somatic cells by repressing germline genes. DREAM complex mutants show close to normal gene expression at 20°C; however, at 26°C, DREAM complex mutants display increased misexpression of germline genes ectopically in the soma and display a distinct High Temperature larval Arrest (HTA) phenotype. It is unclear what gene regulatory mechanisms lead to misexpression of germline genes in somatic cells of DREAM complex mutants. My dissertation research investigated three aspects of …

Characterization Of The Mir-44 Family Of Micrornas In The C. Elegans Germline, Katherine Ann Maniates

Dissertations (1934 -)

While numerous individual miRNAs have been detected in the germline, the functions of most other specific miRNAs remain largely unknown. Functions of miRNAs have been difficult to determine as miRNAs often modestly repress target mRNAs and are suggested to sculpt or fine tune gene expression to allow for the robust expression of cell fates. Analysis of newly generated mir-44 family mutants has identified a group of miRNAs that modulate the pathway of germline sex determination in C. elegans. Mutants produce fewer sperm and display an earlier switch to producing oocytes. In the germline, cell fate decisions are made for germline …

Anthropogenic Drivers And Ecological Concepts Of Antimicrobial Resistance, Rachelle E. Beattie

Dissertations (1934 -)

Antimicrobial resistance (AMR) is a ubiquitous global health issue driven by the overuse and misuse of antimicrobial compounds in healthcare and veterinary medicine. Both natural and built environments have been recognized as reservoirs of antimicrobial resistant bacteria, genes, and pathogens but the factors that drive increases in their abundance are not well understood, especially in natural environments. The primary goal of this work is to characterize the ecological drivers of antimicrobial resistance in freshwater ecosystems impacted by intensive livestock farms, known contributors of environmental resistance. Kewaunee County, Wisconsin served as an ideal study site for the investigation of the impact …

The Role Of Chromatin Remodeling Protein And Transcriptional Repressor, Ing4, In Hematopoiesis Regulation, Melanie Rodriguez

Theses and Dissertations

The hematopoietic compartment is tasked with the establishment and maintenance of the entire blood program. Key to this process are hematopoietic stem cells (HSCs), which possess the unique ability to self-renew and differentiate to replenish blood cells throughout an organism’s lifetime. In a screen for epigenetic regulators of hematopoiesis in zebrafish, we identified chromatin remodeling protein and transcription repressor, Ing4, as a requirement for hematopoietic stem and progenitor cell (HSPC) specification. Ing4, a member of the inhibitor of growth (ING) family, is a subunit of the HB01-JADE-hEAF6 histone acetyltransferase complex responsible for most nucleosomal histone H4 acetylation in eukaryotes. Ing4 …

Investigating The Role Of Lin-35 And The Dream Complex In Preserving Fertility Under Stress In C. Elegans, Frances Virginia Compere

Master's Theses (2009 -)

Organisms are subjected to environments that can fluctuate and cause them stress. Therefore, organisms must have the ability to adapt to the stress to survive and propagate. Temperature stress is becoming an increasingly relevant type of stress due to climate change and is known to affect fertility in many types of organisms including the model organism Caenorhabditis elegans. Here we examine the role of LIN-35, the single C. elegans homolog of the tumor suppressor Retinoblastoma (pRB), in fertility under moderate temperature stress. We found that lin-35 mutants lose fertility more drastically under moderate temperature stress than wildtype worms, and that …

Proteomics Of The Egg Cell Membrane Of The Sea Star Patiria Miniata, Emily Wiseman

Theses and Dissertations

The conception of life, the creation of a genetically distinct being, is an event that has fascinated humanity for ages. It was only recently, at the turn of the 20th century, that the field of reproduction research reached an age of molecular mechanics, and with that, an onslaught of difficulties were encountered. The egg is a unique cell type because it contains a number of mRNA transcripts that do not express proteins necessary for the initial moments of gamete interaction or egg activation. Instead, these RNAs are stored in the egg for expression during early embryonic development. Coupled with the …

Biological Flora Of The Tropical And Subtropical Intertidal Zone: Literature Review For Rhizophora Mangle L., Hudson R. Deyoe, Robert I. Lonard, Frank W. Judd, Richard Stalter, Ilka Feller

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Rhizophora mangle L. is a tropical and subtropical mangrove species that occurs as a dominant tree species in the intertidal zone of low-energy shorelines. Rhizophora mangle plays an important role in coastal zones as habitat for a wide range of organisms of intertidal food webs, as a natural barrier to coastal erosion, and as carbon sequestration. A review of mangrove literature has been performed, but a review specifically on red mangroves has not. The approach was to cover a broad range of topics with a focus on topics that have seen significant work since the 1970s. This review includes a …

Features Of Heart Activity Of Cattle In The Conditions Of Southern Aral Sea Region, Svetlana Mambetullaeva, Khayratdin Seytkamalov

Karakalpak Scientific Journal

In this article, the results of comparative analysis of electrocardiogram are shown for the cows of different breeds in the Aral Sea region. It is set that the high temperature of the environment and sunny insolation render a negative influence on the functional parameters of the cardiac vascular system of animals. There are facts about the cows of different breeds at the influence of different temperatures that have unidirectional functional changes in the operation of the heart. At the same time, we will mark that these changes are less expressed for the cows of the improved zebu visible cattle, what …

The Complicated And Confusing Ecology Of Microcystis Blooms, Steven W. Wilhelm, George S. Bullerjahn, R Michael Mckay

Biological Sciences Faculty Publications

Blooms of the toxin-producing cyanobacterium are increasing globally, leading to the loss of ecosystem services, threats to human health, as well as the deaths of pets and husbandry animals. While nutrient availability is a well-known driver of algal biomass, the factors controlling "who" is present in fresh waters are more complicated. possesses multiple strategies to adapt to temperature, light, changes in nutrient chemistry, herbivory, and parasitism that provide a selective advantage over its competitors. Moreover, its ability to alter ecosystem pH provides it a further advantage that helps exclude many of its planktonic competitors. While decades of nutrient monitoring have …

Extraction, Derivatization, Characterization And Antifungal Investigation Of Limonene From Citrus Sinensis Peels, Ita Uwidia, Bodunde Owolabi, Richard Okafor

Tanzania Journal of Science

Limonene, a cyclic monoterpene is the main component in citrus oils. Oranges (Citrus sinensis) were sourced from a local market, peeled and the peels collected for this study. The orange peels were distilled using steam distillation to obtain the oil. The oil obtained was then distilled to obtain a pure colourless form of limonene (95%). The limonene (2 ml) was dissolved in dry chloroform (25 ml) and freshly distilled hydroiodic acid (57%; boiling point 127 °C) to give the derivative iodo-limonene (1.4 g; 30% yield). Another reaction of epoxidation of limonene was carried out by reacting limonene with hydrogen peroxide …

Variability Of Selected Mineral Contents In Marine Fish From Local Markets In Tanzania, Stella Shija, Matobola Mihale, Daniel Shilla

Tanzania Journal of Science

Mineral contents (K, Na, Ca and Mg) in selected marine fish species (Alectis ciliaris, Lethrinus harak, Rastrelliger kanagurta and Siganus canaliculatus) from local fish markets were analysed in wet and dry seasons. The processing methods (frying and boiling) were also assessed for their influence on the mineral contents. Samples were randomly collected from Tanga, Bagamoyo, Dar es Salaam and Mtwara seaports, analysed using established methods and determined by Graphite Furnace Atomic Absorption Spectrometry. Mean mineral contents in individual and all analysed fish species were high during dry season compared to wet season except Ca and the difference was statistically significant …

The Impact Of Fire On Soil Characteristics In The Maritime Forests On Sapelo Island, Ga, Courtney Nicole Scott

Biology Theses

Human activities have drastically altered natural fire regimes in countless ecosystems by suppressing and/or effectuating fires. In the past, management strategies were formulated to eliminate the occurrence of fire altogether but as we have become more aware of the benefits of fires such as reducing the amount of fuel build-up, recycling of nutrients for healthier plant communities and the promotion of biodiversity, prescribed burns are now considered an integral part of forest management. While many studies have explored the benefits of fires on plant communities, very few studies look at the impacts of fire on soil characteristics. Sapelo Island, which …

Macronutrient Intake And Simulated Infection Threat Independently Affect Life History Traits Of Male Decorated Crickets, Kristin Duffield, Kylie J. Hampton, James Rapkin, John Hunt, Scott K. Sakaluk, Ben M. Sadd, Thomas M. Houslay

Faculty Publications – Biological Sciences

Nutritional geometry has advanced our understanding of how macronutrients (e.g.,proteins and carbohydrates) influence the expression of life history traits and theircorresponding trade-offs. For example, recent work has revealed that reproduc-tion and immune function in male decorated crickets are optimized at very differentprotein:carbohydrate (P:C) dietary ratios. However, it is unclear how an individual'smacronutrient intake interacts with its perceived infection status to determine in-vestment in reproduction or other key life history traits. Here, we employed a fullyfactorial design in which calling effort and immune function were quantified formale crickets fed either diets previously demonstrated to maximize calling effort(P:C = 1:8) or immune …

The Influence Of Stochasticity, Landscape Structure And Species Traits On Abundant–Centre Relationships, Tad Dallas, Luca Santini

Faculty Publications

Species have been commonly hypothesized to have high population densities in geographic areas which correspond to either the centre of the species geographic range or climatic niche (abundant–centre hypothesis). However, there is mixed empirical support for this relationship, and little theoretical underpinning. We simulate a species spreading across a set of replicated artificial landscapes to examine the expected level of support for abundant–centre relationships in geographic and niche space. Species niche constraints were modeled as a single axis which was related directly to population growth rates. We found strong evidence for abundant–centre relationships when populations follow deterministic growth, dispersal is …

Potential Effects Of Climate Change On The Geographic Distribution Of The Endangered Plant Species Manihot Walkerae, Gisel Garza, Armida Rivera, Crystian Sadel Venegas Barrera, Jose Guadalupe Martinez-Avalos, Jon Dale, Teresa Patricia Feria-Arroyo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Walker’s Manihot, Manihot walkerae, is an endangered plant that is endemic to the Tamaulipan thornscrub ecoregion of extreme southern Texas and northeastern Mexico. M. walkerae populations are highly fragmented and are found on both protected public lands and private property. Habitat loss and competition by invasive species are the most detrimental threats for M. walkerae; however, the effect of climate change on M. walkerae’s geographic distribution remains unexplored and could result in further range restrictions. Our objectives are to evaluate the potential effects of climate change on the distribution of M. walkerae and assess the usefulness of natural protected areas …

Toxin Transcripts In Crotalus Atrox Venom And In Silico Structures Of Toxins, Ying Jia, Ivan Lopez, Paulina Kowalski

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The western diamondback rattlesnake (Crotalus atrox) is a common and widespread North American pit viper species, and its venom possesses medical applications. In this research, we identified 14 of the most common transcripts encoding 11 major venom toxins including transcripts for a three-finger toxin (3FTx) from the crude venom of C. atrox. In silico three-dimensional (3D) structures of 9 venom toxins were predicted by using deduced toxin amino acid sequences and a computer programme-MODELLER. The accuracy of all predicted toxin structures was evaluated by five stereochemical structure parameters including discrete optimised protein energy (DOPE) score, root mean square deviation (RMSD), …

Diversity Of Trichoptera Emergence And Their Longitudinal Distribution Along Streams In Central Palawan, The Philippines, Hendrik Freitag, Wolfram Mey

Biology Faculty Publications

Trichoptera emergences were cumulatively collected from two rivers in central Palawan over 11 months by use of specially modified emergence traps. The quantitative samples were identified at species level. Fifty morphospecies, of which fifteen have been recently newly described, are recognized. The highest species diversity was found in pristine headwater streams. Leptoceridae were most speciose with eleven Oecetis spp., four Leptocerus spp., two Adicella spp., and one species each of Tagalopsyche, Triaenodes, and Triplectides. Highest abundances were observed for Ecnomus cabayugani (Ecnomidae), Dipseudopsis digitata, and Hyalopsyche winkleri (Dipseudopsidae) which contributed alone 34% of the annual emergence. A mid-stream site where …

Low Intensity Vibrations Augment Mesenchymal Stem Cell Proliferation And Differentiation Capacity During In Vitro Expansion, Guniz Bas, Stacie Loisate, Stephanie F. Hudon, Kali Woods, Eric J. Hayden, Xinzhu Pu, Richard Beard, Julia T. Oxford, Gunes Uzer

Biology Faculty Publications and Presentations

A primary component of exercise, mechanical signals, when applied in the form of low intensity vibration (LIV), increases mesenchymal stem cell (MSC) osteogenesis and proliferation. While it is generally accepted that exercise effectively combats the deleterious effects of aging in the musculoskeletal system, how long-term exercise affects stem cell aging, which is typified by reduced proliferative and differentiative capacity, is not well explored. As a first step in understanding the effect of long-term application of mechanical signals on stem cell function, we investigated the effect of LIV during in vitro expansion of MSCs. Primary MSCs were subjected to either a …

Regional Phenotypic Differences Of The Opener Muscle In Procambarus Clarkii: Sarcomere Length, Fiber Diameter, And Force Development, Rachel C. Holsinger, Robin L. Cooper

Biology Faculty Publications

The opener muscle in the walking legs of the crayfish (Procambarus clarkii) has three distinct phenotypic regions although innervated by only one excitatory motor neuron. These regions (distal, central, and proximal) have varied biochemistry and physiology, including synaptic structure, troponin-T levels, fiber diameter, input resistance, sarcomere length, and force generation. The force generated by the central fibers when the excitatory neuron was stimulated at 40 Hz was more than the force generated by the other regions. This increase in force was correlated with the central fibers having longer sarcomeres when measured in a relaxed claw. These data support …

Identification Of Tandem Repeat Families From Long-Read Sequences Of Humulus Lupulus, Katherine A. Easterling, Nicholi J. Pitra, Taylan B. Morcol, Jenna R. Aquino, Lauren G. Lopes, Kristin C. Bussey, Paul D. Matthews, Hank W. Bass

Publications and Research

Hop (Humulus lupulus L.) is known for its use as a bittering agent in beer and has a rich history of cultivation, beginning in Europe and now spanning the globe. There are five wild varieties worldwide, which may have been introgressed with cultivated varieties. As a dioecious species, its obligate outcrossing, non-Mendelian inheritance, and genomic structural variability have confounded directed breeding efforts. Consequently, understanding the hop genome represents a considerable challenge, requiring additional resources. In order to facilitate investigations into the transmission genetics of hop, we report here a tandem repeat discovery pipeline developed using k-mer filtering and dot plot …

Molecular And Ultrastructure Study Of Tight Junction During Experimental Entamoeba Spp. Infection, Athraa A. Al-Hilfi Dr, Maha Khalil Al-Malak, Shereen Jawad Al-Ali, Muslim Abd-Ulrahman Al-Tomah

Karbala International Journal of Modern Science

Entamoeba spp. in particular E.histolytica is the main reason of human amoebiasis. The molecular mechanism of its pathogenicity is poorly understood, therefore the aim this study is to investigate these mechanism on both molecular and ultrastructure levels. Tight junction (TJ) genes Claudin-1 (Cldn1) and Occludin (Ocln) were investigated by real time PCR and the pathological changes by scanning electron microscopy (SEM) and transmission electron microscope (TEM), the result showed that the gene expression levels of TJ genes were significantly high in rats infected with E. histolytica E. dispar and E. moshkovskii after 28, 14, 7 days in compare with healthy …

Insights Into Desiccation Tolerance: Properties Of Late Embryogenesis Abundant Proteins From Embryos Of Artemia Franciscana, Blase Matthew Leblanc

LSU Doctoral Dissertations

LEA proteins are a family of intrinsically disordered proteins that are expressed in various life stages of anhydrobiotic organisms and have been strongly associated with survival during water stress. The brine shrimp Artemia franciscana is the only known anhydrobiotic animal that expresses LEA proteins from Groups 1, 3, and 6. Here, I report that AfrLEA6, a novel Group 6 LEA protein, is most highly expressed in embryos during diapause and decreases throughout pre-emergence development. Notably, there is an acute drop in expression upon termination of the diapause state and the titer of AfrLEA6 during diapause is 10-fold lower than values …