Digital Commons Network^™

Simultaneous Monitoring Cytoplasmic Calcium Ion And Cell Surface Phosphatidylserine In The Necrotic Touch Neurons Of Caenorhabditis Elegans, Yoshitaka Furuta, Zheng Zhou

Faculty, Staff and Students Publications

Calcium ions trigger many cellular events, including the release of neurotransmitters at the synaptic terminal and excitotoxic cell death. Recently, we have discovered that a transient increase in the level of cytoplasmic Ca2+ triggers the exposure of phosphatidylserine (PS) on the surfaces of necrotic cells in the nematode Caenorhabditis elegans. PS serves as an “eat me” signal that attracts engulfing cells to engulf and degrade necrotic cells. During the above study, we developed a microscopic imaging protocol for real-time monitoring the levels of cytoplasmic Ca2+ and cell surface PS in Caenorhabditis elegans touch neurons. Previously, Ca2+ dynamics was monitored …

Carpe Diem: Winner And Loser Effects Are Constrained To Same-Day Competitions In Collegiate Baseball, Omar Tonsi Eldakar, Natalie Buckwold, Andrew C. Gallup

Biology Faculty Articles

Competitive outcomes can be significantly influenced by previous experience of winning and losing, whereby all things considered, winners are likely to continue winning and losers are likely to keep losing. Although short-lived, the underlying hormonal changes associated with these effects have been observed into the following day. Here, we assess the functional persistence of winner and loser effects in college baseball by investigating outcomes (splits vs. sweeps) of multigame series played over one or more days. Results show that sweeps occur at disproportionately higher frequencies in single-day series, but drop off to expected levels for multiday series.

Norovirus Protease Structure And Antivirals Development, Boyang Zhao, Liya Hu, Yongcheng Song, Ketki Patil, Sasirekha Ramani, Robert L Atmar, Mary K Estes, B V Venkataram Prasad

Faculty, Staff and Students Publications

Human norovirus (HuNoV) infection is a global health and economic burden. Currently, there are no licensed HuNoV vaccines or antiviral drugs available. The protease encoded by the HuNoV genome plays a critical role in virus replication by cleaving the polyprotein and is an excellent target for developing small-molecule inhibitors. The current strategy for developing HuNoV protease inhibitors is by targeting the enzyme's active site and designing inhibitors that bind to the substrate-binding pockets located near the active site. However, subtle differential conformational flexibility in response to the different substrates in the polyprotein and structural differences in the active site and …

Desktop Scanning Electron Microscopy In Plant-Insect Interactions Research: A Fast And Effective Way To Capture Electron Micrographs With Minimal Sample Preparation, Sakshi Watts, Ishveen Kaur, Sukhman Singh, Bianca Jimenez, Jesus Chavana, Rupesh R. Kariyat

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The ability to visualize cell and tissue morphology at a high magnification using scanning electron microscopy (SEM) has revolutionized plant sciences research. In plant-insect interactions studies, SEM based imaging has been of immense assistance to understand plant surface morphology including trichomes (plant hairs; physical defense structures against herbivores (Kaur and Kariyat, 2020a, 2020b; Watts and Kariyat, 2021), spines, waxes, and insect morphological characteristics such as mouth parts, antennae, and legs, that they interact with. While SEM provides finer details of samples, and the imaging process is simpler now with advanced image acquisition and processing, sample preparation methodology has lagged. The …

Algal Biodiversity Survey Of The Middle Chattahoochee River Using Dna Metabarcoding, Amanda Howell

Theses and Dissertations

Aquatic plants play vital roles in water systems by providing ecological services, and one group that is understudied is algae. Algae play a crucial role in water systems as bioindicators and primary producers. They can be challenging to identify with the naked eye, so researchers have been using DNA metabarcoding, where DNA belonging to specific taxa can be isolated and identified from water samples. The objective of this study was to conduct an algal biodiversity survey on the middle Chattahoochee River system in Georgia. Water samples (1L) were filtered and sent to RTL Genomics for sequencing and processing; the data …

Vps54 Regulates Lifespan And Locomotor Behavior In Adult Drosophila Melanogaster, Emily C. Wilkinson, Emily L. Starke, Scott A. Barbee

Biological Sciences: Faculty Scholarship

Vps54 is an integral subunit of the Golgi-associated retrograde protein (GARP) complex, which is involved in tethering endosome-derived vesicles to the trans-Golgi network (TGN). A destabilizing missense mutation in Vps54 causes the age-progressive motor neuron (MN) degeneration, muscle weakness, and muscle atrophy observed in the wobbler mouse, an established animal model for human MN disease. It is currently unclear how the disruption of Vps54, and thereby the GARP complex, leads to MN and muscle phenotypes. To develop a new tool to address this question, we have created an analogous model in Drosophila by generating novel loss-of-function alleles of the …

Intein Inhibitors As Novel Antimicrobials: Protein Splicing In Human Pathogens, Screening Methods, And Off-Target Considerations, Diana A. Wall, Chunyu Wang, Kenneth Mills, Christopher W. Lennon

Faculty & Staff Research and Creative Activity

Protein splicing is a post-translational process by which an intervening polypeptide, or intein, catalyzes its own removal from the flanking polypeptides, or exteins, concomitant with extein ligation. Although inteins are highly abundant in the microbial world, including within several human pathogens, they are absent in the genomes of metazoans. As protein splicing is required to permit function of essential proteins within pathogens, inteins represent attractive antimicrobial targets. Here we review key proteins interrupted by inteins in pathogenic mycobacteria and fungi, exciting discoveries that provide proof of concept that intein activity can be inhibited and that this inhibition has an effect …

Avian Reproductive Success Is Associated With Multiple Vegetation Characteristics At An Active Grassland Restoration Site In Central Georgia, Kayla Allen, Katie Stumpf

Georgia Journal of Science

Grassland bird populations are experiencing major declines due to habitat degradation, pesticide use, and fire suppression throughout North America. Large-scale grassland restoration efforts to improve and provide suitable habitat are ongoing, but there is little data on productivity of birds breeding in restored habitats, nor on the impact of specific vegetation characteristics on reproductive success. Since 2005, agriculture fields at Panola Mountain State Park in central Georgia have been undergoing restoration to warm-season grasslands; however, until now, data on nest success or productivity was lacking. The goals of this project were to: (1) quantify reproductive success and (2) determine which …

A Bioinformatic And Biochemical Analysis Of Cruciviruses, George William Kasun

Dissertations and Theses

Cruciviruses are novel ssDNA viruses discovered through metagenomics and direct environmental DNA amplification and cloning. The genomes of cruciviruses suggest that gene transfer between RNA and DNA viruses occurred due to the presence of putative protein-encoding genes that are homologous to both ssRNA and ssDNA viruses. In order to gain a better understanding of this group of viruses both bioinformatic analyses and in vitro biochemical experiments were employed. The results of the bioinformatic analyses show that cruciviruses are a highly diverse group of ssDNA viruses. Their placement within established ssDNA phylogenies is difficult due to heterogeneity in their putative replication-associated …

The Behaviors Of A Captive Father-Daughter Pair Of Ateles Geoffroyi Geoffroyi, Felicia Gordian

The Pegasus Review: UCF Undergraduate Research Journal

The Central Florida Zoo and Botanical Gardens intends to introduce new members to the black-handed spider monkeys (Ateles geoffroyi geoffroyi) enclosure. The behavioral analysis of captive animals within their human-made zoo environments is pertinent information for zookeepers before such an introduction can be made. To contribute to that goal, this study observed the behaviors of a father-daughter pair of black-handed spider monkeys. This study observed their vocalizations, habitat utilization, enrichment utilization, conspecific interactions, and interactions with humans to better understand how they interact with their environment as well as their group dynamics. This behavioral baseline can then be utilized to …

Synapsej: An Automated, Synapse Identification Macro For Imagej, Juan Felipe Moreno Manrique, Parker R. Voit, Kathryn E. Windsor, Aamuktha Reddy Karla, Sierra R. Rodriguez, Gerard M.J. Beaudoin Iii

Biology Faculty Research

While electron microscopy represents the gold standard for detection of synapses, a number of limitations prevent its broad applicability. A key method for detecting synapses is immunostaining for markers of pre- and post-synaptic proteins, which can infer a synapse based upon the apposition of the two markers. While immunostaining and imaging techniques have improved to allow for identification of synapses in tissue, analysis and identification of these appositions are not facile, and there has been a lack of tools to accurately identify these appositions. Here, we delineate a macro that uses open-source and freely available ImageJ or FIJI for analysis …

Molecular Analysis Of Mchm Toxicity In Zebrafish, Cassandra Pelton

Honors College Theses

In early 2014 Freedom Industries, located in Charleston, WV, leaked approximately 10,000 gallons of 4-methylcyclohexane methanol into the Elk River. This river serviced approximately 300,000 people as a source of municipal water. Its effects on the people and surrounding wildlife is largely unknown.

Chemicals in surface runoff have the potential to induce aquatic animal trait changes, such as altered movement and feeding, that can ultimately alter predator-prey dynamics in aquatic systems. However, chemicals with high potential to enter aquatic systems, like 4-methylcyclohexane methanol (MCHM) used to clean coal, were tested using only short-term, single-species studies prior to use. Data from …

Lifelines Fall 2021, Southern Adventist University

Lifelines - Biology Department Newsletter

The Fall 2021 issue of Lifelines contains articles on a former biology student, information on student research, the Palau Adventist Wellness Center, and Department Happenings.

Salicylic Acid: A Key Regulator Of Redox Signalling 1 And Plant Immunity, Mohd Saleem, Qazi Fariddudin, Christian Castroverde

Biology Faculty Publications

In plants, the reactive oxygen species (ROS) formed during normal conditions are essential in regulating several processes, like stomatal physiology, pathogen immunity and developmental signaling. However, biotic and abiotic stresses can cause ROS over-accumulation leading to oxidative stress. Therefore, a suitable equilibrium is vital for redox homeostasis in plants, and there have been major advances in this research arena. Salicylic acid (SA) is known as a chief regulator of ROS; however, the underlying mechanisms remain largely unexplored. SA plays an important role in establishing the hypersensitive response (HR) and systemic acquired resistance (SAR). This is underpinned by a robust and …

Squid And Cuttlefish Resources Of Western Australia, Daniel Yeoh, Danielle Johnston, David C. Harris

Fisheries Research Reports

This report provides a description and assessment of the squid and cuttlefish resources of Western Australia, and all of the fishing activities (i.e. fisheries / fishing sectors) affecting these resources. Encompassed are multiple species in the orders Oegopsida and Myopsida (squid or ‘calamari’) and Sepiida (cuttlefish), including; southern calamari (Sepioteuthis australis), northern calamari (Sepioteuthis lessoniana), Gould’s squid (Nototodarus gouldi), loligo squids Uroteuthis (Photololigo) spp.,giant cuttlefish (Sepia apama), broadclub cuttlefish (Sepia latimanus) and pharaoh cuttlefish (Sepia pharaonis).

How To Actually Get An Internship, Zachary Lawrence

Trick to the Treat of Internships and Research

No abstract provided.

Risk Assessment Of Yellow Pine Mining Area, Noel Preece

Fall Showcase for Research and Creative Inquiry

The risk assessment process involves identifying and characterizing hazards, determining dose-response relationships, and assessing possible exposures to toxins in order to inform risk management. The goal of this project was to complete the steps of a risk assessment and develop a perspective on risk management. Data collected from publicly available databases, scholarly articles, and targeted sources were used to perform a risk assessment for Yellow Pine Mining Area. Social, economic, political, and/or legal perspectives were considered when determining the best risk management approaches.

Risk Assessment Of Devil's Swamp Lake, Jocelyn Price

Fall Showcase for Research and Creative Inquiry

The risk assessment process involves identifying and characterizing hazards, determining dose-response relationships, and assessing possible exposures to toxins in order to inform risk management. The goal of this project was to complete the steps of a risk assessment and develop a perspective on risk management. Data collected from publicly available databases, scholarly articles, and targeted sources were used to perform a risk assessment for Devil's Swamp Lake. Social, economic, political, and/or legal perspectives were considered when determining the best risk management approaches.

Microbial Diversity Of Rural And Urban Soil At Different Depths On Longwood University's Campus, Kristen Dobek, Madalyn Cook

Fall Showcase for Research and Creative Inquiry

Microbial diversity is the range of various kinds of bacteria. The purpose of this experimental research was to determine the complex diversity of bacteria among soil samples at two locations on Longwood University's campus. The study found that there was a higher microbial diversity in the rural soil sample location compared to the urban soil sample location.

Micro-Rna, A Solution For Understanding Depression, Marshall White

Fall Showcase for Research and Creative Inquiry

Major depressive disorder is a mood disorder that causes sadness and loss of interest. This affects how one may feel, think, or behave which impact their physical and mental state. People who have been diagnosed with this disorder find themselves losing interest in things they once loved. In the United States there are 16.1 million Americans diagnosed with MDD. This disorder is more common in individuals who have had it in their families which has resulted in the interest in how different genes impact MDD. Micro-RNA has been researched and discovered to have a correlation with MDD. These Micro-RNA's show …

Reconstructing Isotelus Rex, Brian White

Fall Showcase for Research and Creative Inquiry

Isotelus rex is the largest trilobite currently known at over 720 mm in length, and by extension is one of the largest arthropods known. However, despite these accolades, it is relatively unknown in both the public consciousness and in the scientific community. This is partially due to its scant visual database, with barely any artistic restorations to help represent its life appearance. In order to rectify this, a digital reconstruction of Isotelus rex is produced utilizing programs such as Blender and Zbrush. The final result of the work is a fully animated restoration of the trilobite, bolstering its visual database …

Assessing The Dispersal And Recruitment Of Stocked Walleye Fry In A Northern Minnesota Chain Of Lakes, Joseph W. Amundson

Biology Graduate Theses

As part of Minnesota's Walleye Sander vitreus egg take practice, 10% of eggs taken for hatchery purposes are stocked back into the donor lake. For Andrusia, part of the Cass Lake Chain of Lakes (Chain), this practice can result in elevated fry densities (mean: 17,000 fry/littoral hectare). However, if fry are able to disperse and use all available littoral hectares throughout the Chain, fry densities would be intermediate to typical stocking densities for Minnesota lakes (1,200 - 2,400 fry/littoral hectare). In 2016-2018, 3-3.5 million fry were mass-marked by immersion in oxytetracycline (OTC) prior to stocking into Andrusia to allow differentiation …

Androgen-Binding Protein (Abp) Evolutionary History: Has Positive Selection Caused Fixation Of Different Paralogs In Different Taxa Of The Genus Mus?, Robert C. Karn, Golbahar Yazdanifar, Željka Pezer, Pierre Boursot, Christina M. Laukaitis

Scholarship and Professional Work - LAS

Comparison of the androgen-binding protein (Abp) gene regions of six Mus genomes provides insights into the evolutionary history of this large murid rodent gene family. We identified 206 unique Abp sequences and mapped their physical relationships. At least 48 are duplicated and thus present in more than two identical copies. All six taxa have substantially elevated LINE1 densities in Abp regions compared with flanking regions, similar to levels in mouse and rat genomes, although nonallelic homologous recombination seems to have only occurred in Mus musculus domesticus. Phylogenetic and structural relationships support the hypothesis that the extensive Abp …

Can Providing Positive Interactions With Snakes Change A Person’S Perception Of Dangerous Wildlife Interactions?, Bethany Walker

Theses

Due to a long co-evolutionary history between placental mammals and reptiles, primates demonstrate aversive responses to snakes. In humans, this can result in ophidiophobia, or the fear of snakes which can arise due to cultural backgrounds, traumatic experiences, or fear instilled by others. However, these reptiles fill essential roles in ecosystems. Conservation and outreach efforts are important to help our population understand snakes’ role in our lives and the state’s broader biodiversity. Negative experiences or preconceptions about snakes can make this message hard to share with the public. Educators can help prevent intentional harm to some of these organisms through …

Md Anderson University Outreach Program, Rosha Chittuluru

Trick to the Treat of Internships and Research

No abstract provided.

Development Of A Novel Real-Time Polymerase Chain Reaction Assay For The Sensitive Detection Of Schistosoma Japonicum In Human Stool, Sara Halili, Jessica R. Grant, Nils Pilotte, Catherine A. Gordon, Steven A. Williams

Biological Sciences: Faculty Publications

Background Elimination and control of Schistosoma japonicum, the most virulent of the schistosomiasiscausing blood flukes, requires the development of sensitive and specific diagnostic tools capable of providing an accurate measurement of the infection prevalence in endemic areas. Typically, detection of S. japonicum has occurred using the Kato-Katz technique, but this methodology, which requires skilled microscopists, has been shown to radically underestimate levels of infection. With the ever-improving capabilities of next-generation sequencing and bioinformatic analysis tools, identification of satellite sequences and other highly repetitive genomic elements for use as real-time PCR diagnostic targets is becoming increasingly common. Assays developed using these …

College Of Natural Sciences Newsletter, October 2021, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Volume 2, Issue 10

Page 1 Dean's Message
Page 2 Awards and Recognition; Introducing Natural Sciences Student Ambassadors
Page 3 Media Coverage of CNS
Page 4 Spooky Science Outreach
Page 5 The BIG Event Outreach
Page 6 Geography Club Road Trip
Page 7 Aamlid Family Anatomy Lab
Page 8 Hobo Day Recap
Page 10 Open PRAIRIE Data; Grants Awarded in CNS

Squirrels On Longwood's Campus, Kelsey English, Miguel Diaz, Lloyd Dominguez, Rebecca Mills

Fall Showcase for Research and Creative Inquiry

In this project, we aim to analyze the distribution, behavior, and abundance of squirrels on Longwood's campus. We hypothesize that squirrels will be most abundant where canopy cover is high, and that these campus squirrels are generally unaffected by surrounding human activity. Multiple sites on campus were observed, and a survey was used to gather data about squirrel activity and sightings from Longwood students. The results indicate that Cox, Wheeler and Stubbs have the highest frequency of squirrels, and that squirrels are most commonly observed being active. Canopy cover was found to have no correlation with abundance of squirrels. Squirrels …

Fisheries Science Update – October 2021: West Coast Demersal Scalefish Resource, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Key points: 2021 stock assessment outcomes • The West Coast Demersal Scalefish Resource (WCDSR) is halfway into a 20-year recovery plan following a period of overfishing in the 1990s and 2000s. • This latest assessment provides an important “health check” on the recovery status. • The recovery plan is based on maintaining recreational (including charter) and commercial sector’s total fishing mortality below catch limits and protecting key spawning aggregations to recover the WCDSR by 2030. • The Department of Primary Industries and Regional Development (DPIRD) tracks recovery progress by undertaking weight of evidence stock assessments of WCDSR indicator species dhufish …

The Timing Of Intermittent Hypoxia Differentially Affects Macronutrient Intake And Energy Substrate Utilization In Mice, Sarah N. Framnes-Deboer, Aaron A. Jones, Michelle Y. Kang, Kat Propsom, Lauren R. Nelson, Deanna M. Arble

Biological Sciences Faculty Research and Publications

Sleep apnea is a common sleep disorder characterized by periodic breathing cessation and intermittent hypoxia (IH). Although previous studies have demonstrated that IH alone can influence metabolic outcomes such as body weight, it remains unclear how the timing of IH can specifically affect these outcomes. Here, we examine how pairing 10-h periods of IH to either the animals’ resting phase (e.g., IH during the day) or active phase (e.g., IH during the night) differentially affects body weight, macronutrient selection, energy expenditure, respiratory exchange rate, and glucose tolerance. We find that in contrast to mice exposed to IH during the night, …