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A Lot About A Little Dot - Lessons Learned From Drosophila Melanogaster Chromosome 4, Nicole Riddle, Christopher Shaffer, Sarah C.R. Elgin

Biology Faculty Research

The fourth chromosome of Drosophila melanogaster has a number of unique properties that make it a convenient model for the study of chromatin structure. Only 4.2 Mb overall, the 1.2 Mb distal arm of chromosome 4 seen in polytene chromosomes combines characteristics of heterochromatin and euchromatin. This domain has a repeat density of ~35%, comparable to some pericentric chromosome regions, while maintaining a gene density similar to that of the other euchromatic chromosome arms. Studies of position-effect variegation have revealed that heterochromatic and euchromatic domains are interspersed on chromosome 4, and both cytological and biochemical studies have demonstrated that chromosome …

Which Sry Locus Is The Hypertensive Y Chromosome Locus?, Monte E. Turner, Joel Farkas, Jeff Dunmire, Daniel Ely, Amy Milsted

Biology Faculty Research

The Y chromosome of the spontaneously hypertensive rat (SHR) contains a genetic component that raises blood pressure compared with the Wistar-Kyoto (WKY) Y chromosome. This research tests the Sry gene complex as the hypertensive component of the SHR Y chromosome. The Sry loci were sequenced in 1 strain with a hypertensive Y chromosome (SHR/Akr) and 2 strains with a normotensive Y chromosome (SHR/Crl and WKY/Akr). Both SHR strains have 7 Sry loci, whereas the WKY strain has 6. The 6 loci in common between SHR and WKY strains were identical in the sequence compared (coding region, 392-bp 5' prime flanking, …

Sexually Antagonistic Selection, Sexual Dimorphism, And The Resolution Of Intralocus Sexual Conflict, Robert M. Cox, Ryan Calsbeek

Dartmouth Scholarship

Males and females share most of their genomes and express many of the same traits, yet the sexes often have markedly different selective optima for these shared traits. This sexually antagonistic (SA) selection generates intralocus sexual conflict that is thought to be resolved through the evolution of sexual dimorphism. However, we currently know little about the prevalence of SA selection, the components of fitness that generate sexual antagonism, or the relationship between sexual dimorphism and current SA selection. We reviewed published studies to address these questions, using 424 selection estimates representing 89 traits from 34 species. Males and females often …

Molecular Coevolution Of Pacific Northwest Hantaviruses And Their Host, The Deer Mouse, Peromyscus Maniculatus, Philip Darren Jones

Dissertations and Theses

Sin Nombre virus (SNV, family Bunyaviridae, genus Hantavirus), hosted by the deer mouse, Peromyscus maniculatus (family Cricetidae, Subfamily Neotominae), is the primary etiological agent of Hantavirus pulmonary syndrome (HPS) in the western United States. HPS, with known pathogenicity only to humans and for which there is no cure or prophylaxis, affects the epithelium of the lungs by making the capillaries leaky, thereby resulting in bilateral infiltrates, and eventually leading to respiratory failure and death by drowning in approximately 38% of hospitalized patients.

In the Americas, Peromyscus has been co-evolving with hantaviruses for approximately 12–20 million years, since the first …

Establishment Of A Research Colony Of Marmorkrebs, A Parthenogenetic Crayfish Species, Stephanie A. Jimenez, Zen Faulkes

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Marmorkrebs, or marbled crayfish, are recently discovered parthenogenetic crayfish. Its origins are unknown, but it has been introduced into natural ecosystems and could become a highly invasive pest species. Marmorkrebs have potential as a model organism for research in many biological fields because they are genetically uniform. A key element of most successful model organisms is maintaining self-sustaining breeding colonies. We report on our efforts find the best conditions for establishing and maintaining a Marmorkrebs breeding colony for research. The colony was founded by four adults of unknown age (P generation). These foundresses were housed communally in standard aquaria and …

Multi-Component Evaluation To Minimize The Spread Of Aquatic Invasive Seaweeds, Harmful Algal Bloom Microalgae, And Invertebrates Via The Live Bait Vector In Long Island Sound, Charles Yarish, Robert Whitlatch, George Kraemer, Senjie Lin

Publications

The goal of the project was to protect guard Long Island Sound from the introduction of non-native organisms that may be imported via fishing bait worms and the seaweed packing material known as wormweed (Ascophyllum nodosum). The project examined bait for non-native invertebrate animals, macroalgae (also known as seaweeds), and harmful, toxin-producing microalgae. Bait was purchased from retail bait shops at locations ranging from northeastern Long Island Sound along the Connecticut shoreline to the southwestern part of the Sound in Long Island. Using a combination of visual and microscopic inspection, and sophisticated molecular biological techniques to detect the presence of …

Protein Nutrition Of Southern Plains Small Mammals: Immune Response To Variation In Maternal And Offspring Dietary Nitrogen, James A. Wilson, Jennifer L. Parsons, Eric E. Jorgensen

Biology Faculty Publications

Maternal nutrition during pregnancy and postnatal offspring nutrition may influence offspring traits. We investigated the effects of maternal and post weaning offspring dietary nitrogen on immune function and hematology in two species of rodent: the hispid cotton rat (Sigmodon hispidus), a primarily herbivorous rodent, and the fulvous harvest mouse (Reithrodontomys fulvescens), an omnivore. These two species responded differently to the same levels of treatment, with cotton rats primarily influenced by maternal diet and harvest mice by post weaning offspring diet. Cotton rats born to mothers on high-nitrogen diets had lower values of mean corpuscle volume and hemoglobin and greater concentrations …

Microarray And Cdna Sequence Analysis Of Transcription During Nerve-Dependent Limb Regeneration, James R. Monaghan, Leonard G. Epp, Srikrishna Putta, Robert B. Page, John A. Walker, Chris K. Beachy, Wei Zhu, Gerald M. Pao, Inder M. Verma, Tony Hunter, Susan V. Bryant, David M. Gardiner, Tim T. Harkins, S. Randal Voss

Biology Faculty Publications

Background

Microarray analysis and 454 cDNA sequencing were used to investigate a centuries-old problem in regenerative biology: the basis of nerve-dependent limb regeneration in salamanders. Innervated (NR) and denervated (DL) forelimbs of Mexican axolotls were amputated and transcripts were sampled after 0, 5, and 14 days of regeneration.

Results

Considerable similarity was observed between NR and DL transcriptional programs at 5 and 14 days post amputation (dpa). Genes with extracellular functions that are critical to wound healing were upregulated while muscle-specific genes were downregulated. Thus, many processes that are regulated during early limb regeneration do not depend upon nerve-derived factors. …

Microarray And Cdna Sequence Analysis Of Transcription During Nerve-Dependent Limb Regeneration, James R. Monaghan, Leonard G. Epp, Srikrishna Putta, Robert B. Page, John A. Walker, Chris K. Beachy, Wei Zhu, Gerald M. Pao, Inder M. Verma, Tony Hunter, Susan V. Bryant, David M. Gardiner, Tim T. Harkins, S. Randal Voss

Biology Faculty Publications

BACKGROUND: Microarray analysis and 454 cDNA sequencing were used to investigate a centuries-old problem in regenerative biology: the basis of nerve-dependent limb regeneration in salamanders. Innervated (NR) and denervated (DL) forelimbs of Mexican axolotls were amputated and transcripts were sampled after 0, 5, and 14 days of regeneration.

RESULTS: Considerable similarity was observed between NR and DL transcriptional programs at 5 and 14 days post amputation (dpa). Genes with extracellular functions that are critical to wound healing were upregulated while muscle-specific genes were downregulated. Thus, many processes that are regulated during early limb regeneration do not depend upon nerve-derived factors. …

Can Males Successfully Invade Hermaphroditic Populations Of Clam Shrimp (Eulimnadia Texana)?, Stephen C. Weeks

Biology Faculty Research

Androdioecy (mixtures of males and hermaphrodites) is distinguished by its rarity, being found in only similar to 40 animal species. Many of these species are clam shrimp in the genus Eulimnadia. A metapopulation model for the maintenance of androdioecy is tested herein by examining male success in aquaria with a single male-producing hermaphrodite introduced into an otherwise all-hermaphrodite population. This migration experiment did allow males to persist in these populations for seven generations, although at levels below those found in other populations of these shrimp. These results suggest that the maintenance of androdioecy via 'reproductive assurance' is unlikely by way …

Thermoregulation And Behavior Of A Peripheral Population Of Evening Bats (Nycticeius Humeralis), Rachel Bricklin

Master's Theses and Doctoral Dissertations

I used temperature-sensitive radio transmitters to measure body temperatures of tree-roosting evening bats (Nycticeius humeralis) at the northern edge of their range in Lenawee Co., Michigan. Temperature at sunset, diurnal temperature, and nocturnal temperature significantly correlated with use of torpor, whereas ambient temperature at sunset of the previous night, temperature at sunrise, amount of precipitation, abundance of insects, roost type, number of roost-mates, reproductive condition, and age did not. An analysis of individuals roosting in the same tree on the same day suggested that additional factors might determine exactly how low and for how long bats adjust their …

Parallel Shifts In Ecology And Natural Selection In An Island Lizard, Ryan Calsbeek, Wolfgang Buermann, Thomas B. Smith

Dartmouth Scholarship

Natural selection is a potent evolutionary force that shapes phenotypic variation to match ecological conditions. However, we know little about the year-to-year consistency of selection, or how inter-annual variation in ecology shapes adaptive landscapes and ultimately adaptive radiations. Here we combine remote sensing data, field experiments, and a four-year study of natural selection to show that changes in vegetation structure associated with a severe drought altered both habitat use and natural selection in the brown anole, Anolis sagrei.

Results: In natural populations, lizards increased their use of vegetation in wet years and this was correlated with selection on limb length …

Dispersal And Establishment Both Limit Colonization During Primary Succession On A Glacier Foreland, Chad C. Jones, Roger Del Moral

Botany Faculty Publications

Plant colonization can be limited by lack of seeds or by factors that reduce establishment. The role of seed limitation in community assembly is being increasingly recognized, but in early primary succession, establishment failure is still considered more important. We studied the factors limiting colonization on the foreland of Coleman Glacier, Washington, USA to determine the importance of seed and establishment limitation during primary succession. We also evaluated the effects of seed predation, drought and existing vegetation on establishment. We planted seeds of seven species into plots of four different ages and found evidence that both seed and establishment limitation …

A Watershed Analysis Of Salmon Lake And Mcgrath Pond: Implications For Water Quality And Land Use Management, Colby Environmental Assessment Team, Colby College, Problems In Environmental Science Course (Biology 493), Colby College

Colby College Watershed Study: Salmon Lake and McGrath Pond (2009, 1993)

In the summer and fall of 2009, the Colby Environmental Assessment Team (CEAT) studied the water quality of Salmon Lake and McGrath Pond, located in the Belgrade Lakes Region of Maine. The physical, chemical and biological characteristics of water quality were measured and analyzed to evaluate the current health of these lakes. Water quality data collected during the summer and fall of 2009 were compared with data from previous years to study the historic water quality trends. Land use patterns in the Salmon/McGrath watershed were also examined to investigate their impact on the lake water quality. The water quality trends …

Host Density And Human Activities Mediate Increased Parasite Prevalence And Richness In Primates Threatened By Habitat Loss And Fragmentation, David N. M. Mbora, Mark A. Mcpeek

Biology

1. Habitat loss and fragmentation are the principal causes of the loss of biological diversity. In addition, parasitic diseases are an emerging threat to many animals. Nevertheless, relatively few studies have tested how habitat loss and fragmentation influence the prevalence and richness of parasites in animals. 2. Several studies of nonhuman primates have shown that measures of human activity and forest fragmentation correlate with parasitism in primates. However, these studies have not tested for the ecological mechanism(s) by which human activities or forest fragmentation influence the prevalence and richness of parasites. 3. We tested the hypothesis that increased host density …

The Biological Function Of Interacting Partners Of Zxd Family Proteins, Rupa V. Koneni

ETD Archive

We have identified several protein-protein interactions amongst the members of the zinc finger, X-linked (ZXD) family of proteins (ZXDA, ZXDB, ZXDC and ZXDC2) that have important roles in the regulation of major histocompatibility complex class II and several myeloid-specific genes. The ZXDC and ZXDA proteins share significant nucleotide sequence homology and each contain ten C2H2 zinc fingers and a transcription activation domain. In addition, ZXDC has a C-terminal region that is necessary to interact with a key cofactor, CIITA (Class II transactivator) and activate Major histocompatibility complex class II and class I (MHC II and MHC I respectively) genes. In …

Biology And Conservation Of Horseshoe Crabs, John T. Tanacredi, Mark L. Bottom, David R. Smith

School of Marine and Environmental Sciences Faculty and Staff Publications and Presentations

We dedicate this book to Drs. Carl N. Shuster, Jr. and Koichi Sekiguchi for their life-long contributions to the biology and conservation of the magnificent horseshoe crab.

Characterization And Differentiation Of Peripheral Blood Derived Multipotent Adult Progenitor Cells, Hari Satya Shankar Addagarla

Theses, Dissertations and Capstones

Stem cells are populations of undifferentiated cells that are found in most tissues and act as precursors for regeneration and maintenance. In the future, they could provide promising therapies for diseases which are to date incurable. Our lab developed a novel cell line from the peripheral blood of adult transgenic green fluorescent protein swine and designated them as Peripheral Blood Derived Multipotent Adult Progenitor Cells (PBD-MAPCs). In this study we characterized the mRNA and protein expression profiles of PBD-MAPCs before and after neural differentiation and investigated the potential of PBD-MAPCs to differentiate into myocardial or neural lineages in vitro. We …

Effects Of Aging On Regulators Of Muscle Apoptosis In The Female F344bn Rat, Murali K. Gadde

Theses, Dissertations and Capstones

Age-related muscle atrophy is a consequence of normal aging characterized by decreases in muscle mass and strength. The mechanism(s) underlying the loss of muscle mass with increasing age is not fully understood, however recent data has suggested that muscle cell apoptosis may be involved. Here we investigate how aging affects the regulation of muscle apoptosis in the extensor digitorum longus (EDL) and soleus muscles of young (6-month), aged (26-month), and very aged (30-month) female Fischer 344/NNiaHSD X Brown Norway / BiNia (F344BN) rats. EDL and soleus muscle mass/body weight ratios were lower in aged animals but not different between 26- …

An Undescribed Gecko (Gekkonidae: Cyrtodactylus) From Deer Cave, Gunung Mulu National Park, Sarawak, With Comments On The Distribution Of Bornean Cave Geckos, Donald A. Mcfarlane, Joyce Lundberg, Keith Christenson

WM Keck Science Faculty Papers

Geckos of the genus Cyrtodactylus are a speciose group in Southeast Asia, with at least nine species known from the island of Borneo (Das & Ismail, 2001; Das, 2006). Of these species, Cyrtodactylus cavernicolus has the smallest known range and is therefore the most vulnerable, a status that is reflected in the species having been designated a Totally Protected Species in Sarawak. Confirmed records of C. cavernicolus are known only from Niah Cave, located in an isolated limestone block known as the Gunung Subis massif, approximately 13 km² in extent. The Niah Cave Gecko is presumed to be dependent on …

Regulation Of Heterochromatin Assembly On Unpaired Chromosomes During Caenorhabditis Elegans Meiosis By Components Of A Small Rna-Mediated Pathway, Xingyu She, Xia Xu, Alexander Fedotov, William G. Kelly, Eleanor M. Maine

Biology - All Scholarship

Many organisms have a mechanism for down regulating the expression of non-synapsed chromosomes and chromosomal regions during meiosis. This phenomenon is thought to function in genome defense. During early meiosis in Caenorhabditis elegans, unpaired chromosomes (e.g., the male X chromosome) become enriched for a modification associated with heterochromatin and transcriptional repression, dimethylation of histone H3 on lysine 9 (H3K9me2). This enrichment requires activity of the cellular RNA-directed RNA polymerase, EGO-1. Here we use genetic mutation, RNA interference, immunofluorescence microscopy, fluorescence in situ hybridization, and molecular cloning methods to identify and analyze three additional regulators of meiotic H3K9me2 distribution: CSR-1 (a …

Insomnia: Its Causes, Its Consequences, And Its Cures, Shoshana Fried

The Science Journal of the Lander College of Arts and Sciences

Insomnia is a complaint that affects almost all Americans at some point throughout their lives. However, only chronic insomnia is truly a disorder. This type of insomnia can be caused by various reasons, whether physiological, molecular, or psychological. This paper will elaborate on a number of possible causes for insomnia. Furthermore, this paper will present some of the many adverse effects that are caused by the sleep deprivation resulting from chronic insomnia. There are many possible treatments available to help against insomnia. This paper will explain 53 some of the behavioral methods. In addition, it will discuss the many different …

Botox And Its Effect On Wrinkles, Rochelle Eckstein

The Science Journal of the Lander College of Arts and Sciences

Clostridia Botulinum (C. Botulinum) is a bacterium that produces a unique exotoxin, botulinum toxin (BTX). BTX induces flaccid muscle paralysis by inhibiting the release of acetylcholine at the cholinergic nerve endings. Recently, Botox, developed from BTX, has become a popular solution to reduce the appearance of hyper-functional facial rhytids. Facial wrinkles are caused by repetitive muscle contraction, and a treatment that directly addresses this will be effective. Injections of Botox temporarily relax or paralyze these muscles. This paper will briefly discuss the bacterial basis of Botox and its development. It will explain how the mechanism of action of BTX can …

Botany At Eastern Illinois University, Marissa C. Jernegan, Nancy E. Coutant, Janice M. Coons

Faculty Research & Creative Activity

Eastern Illinois University was established in 1899, and from its beginning the importance of the botanical sciences was recognized. Two terms of botany were required for the four year program. Dr. Otis W. Caldwell, a botanist, was one of the original faculty members. He taught all of the biology courses and initiated the acquisition of a greenhouse. Caldwell was the first in a series of talented and dedicated botany professors including Edgar N. Transeau, Ernest L. Stover, Hiram F. Thut and John E. Ebinger. These and many other professors incorporated a field component into almost all classes. This dedication to …

Natural History Notes: Rhinocheilus Lecontei Tesselatus (Longevity), Stephen J. Mullin

Faculty Research & Creative Activity

No abstract provided.

Lifelines Winter 2009, Southern Adventist University

Lifelines - Biology Department Newsletter

The Winter 2009 issue of Lifelines features articles on RAM Clinics, Dr. Earl Aagaard's retirement, the addition of Richard Seidel to the faculty, and a pictorial directory of the 2009 biology and allied health graduates.

Life-Centered Ethics And The Human Future In Space, Michael Noah Mautner

Chemistry Publications

In the future, human destiny may depend on our ethics. In particular, biotechnology and expansion in space can transform life, raising profound questions. Guidance may be found in Life-centered ethics, as biotic ethics that value the basic patterns of organic gene/protein life, and as panbiotic ethics that always seek to expand life. These life-centered principles can be based on scientific insights into the unique place of life in nature, and the biological unity of all life. Belonging to life then implies a human purpose: to safeguard and propagate life. Expansion in space will advance this purpose but will also raise …

The Effect Of Exercise On Alzheimer’S Disease, Benjamin Korman

The Science Journal of the Lander College of Arts and Sciences

Alzheimer’s disease (AD) is a progressive neurodegenerative disease, from which there is no recovery. It begins with impaired memory and judgement and progresses to the point where those affected can no longer care themselves. Although the cause of AD is unknown, two significant abnormalities occur in the brain of its victims: neurofibrillary tangles and amyloid plaques. It has been well established that exercise improves mood and general well-being, however this paper will focus on the effect of exercise on AD. It will show that exercise can improve physical functioning of an individual with AD, however more importantly it will focus …

Demographics Of A Geographically-Isolated Population Of Threatened Salamander (Caudata: Ambystomatidae) In Central Illinois, Stephen J. Mullin, Sarabeth Klueh

Faculty Research & Creative Activity

Amphibian populations that use small isolated wetlands are often small in size, susceptible to stochastic extinction processes, and have little to no contact with other populations. One can ascertain the persistence of such populations only by obtaining data that allow the prediction of future changes in population’s size, and propensity to achieve a sustainable number of individuals. The number of metamorphosing larvae leaving a pond predicts the viability of a salamander population, and thus, the number recruited into the terrestrial adult population. The Jefferson Salamander, Ambystoma jeffersonianum, is a listed threatened species in Illinois, occurring at fewer than 15 ponds …

Thermoregulation Of Male Elaphe Spiloides In An Agriculturally-Fragmented Forest In Illinois, C. Drew Foster, Sarabeth Kleuh, Stephen J. Mullin

Faculty Research & Creative Activity

Anthropogenic forest fragmentation increases the amount of edge habitat. Although edges are harsh environments for many native species, ratsnakes often prefer this habitat. We examined thermoregulatory effectiveness of Central Ratsnakes (Elaphe spiloides) using forest edges preferentially to determine if edge preference is driven by increased thermoregulatory efficiencies. Six male subjects were located every 1-2 days using radio-telemetry and temperature sensitive transmitters. Subjects did not thermoregulate more efficiently in edges than in forest. Snakes were thermoconformers in both habitat types suggesting edge preference might be driven by other factors.