Digital Commons Network^™

Fisheries Management Paper No.245 - Aquaculture Of Coral, Live Rocks And Associated Products. Aquaculture Policy, Department Of Fisheries, Western Australia

Fisheries Management Papers

Aquarium enthusiasts use corals, live rock and associated products (e.g. live sand) for display and to maintain healthy water quality conditions in their marine aquariums. There is a large and growing market for these products. While the wild harvest fisheries for aquarium products in Western Australia are sustainably managed, output is capped, so increased product is needed to meet the market demand. With a trend towards the capping of wild harvest and additional pressures, such as the introduction of Marine Parks and other marine protected areas, the aquaculture of these products is set for industry development and expansion.

The large …

Adding Upstream Sequence And A Downstream Reporter To The Bile Acid Inducible Promoter Of Clostridium Scindens Vpi 12708, Bryan Patrick Mason

Masters Theses & Specialist Projects

Bile acids in the small intestines of animals serve to breakdown fats and fatsoluble vitamins. Most of the bile acids are reabsorbed into the enterohepatic circulation, but approximately five percent of these bile acids pass into the large intestine. These bile acids are swiftly deconjugated by the bacterial population, and then subjected to further intestinal bacterial chemical modifications. The most significant of these modifications are 7α-dehydroxylations which form secondary bile acids (deoxycholate and lithocholate). Much research has illuminated the 7α-dehydroxylation pathway: of particular interest is the bile acid inducible operon, for which Clostridium scindens VPI 12708 serves as the model …

Ecological Impact Of Epigeal Termitaria On Vertebrates In The Tsavo Region Of Southeast Kenya, Margaret M. Mahan

Masters Theses & Specialist Projects

Termites ecologically engineer their environment by producing termitaria (mounds) used by many other species as dens, lookouts or food sources. The role of termite mounds in biological communities is relatively unknown, despite their ubiquitous nature. I investigated their impact on vertebrates in the Tsavo region of Kenya. Through the characterization of mounds, trapping, direct observation, and collecting microclimate data, I was able to determine the importance of mounds to vertebrates. I found uniform dispersion of mounds, that soil type is correlated with the size of mounds, and that vertebrate activity increases with mound size. I also found no significant differences …

Pestilence, Persistence And Pathogenicity: Infection Strategies Of Bartonella, Michael F. Minnick, James M. Battisti

Biological Sciences Faculty Publications

It has been nearly two decades since the discovery of Bartonella as an agent of bacillary angiomatosis in AIDS patients and persistent bacteremia and 'nonculturable' endocarditis in homeless people. Since that time, the number of Bartonella species identified has increased from one to 24, and 10 of these bacteria are associated with human disease. Although Bartonella is the only genus that infects human erythrocytes and triggers pathological angiogenesis in the vascular bed, the group remains understudied compared with most other bacterial pathogens. Numerous questions regarding Bartonella's molecular pathogenesis and epidemiology remain unanswered. Virtually every mammal harbors one or more Bartonella …

Tri-Trophic Linkages In Disease: Pathogen Transmission To Rainbow Trout Through Stonefly Prey, Sandra M. Adams, Aaron S. Adams, William E. Holben

Biological Sciences Faculty Publications

ABSTRACT Relationships between macroinvertebrates and microorganisms in aquatic environments are only poorly understood despite the fact that many aquatic macroinvertebrates feed on microbial biofilms during some life stage. Better understanding of trophic interactions between microbial biofims, macroinvertebrates, and fish may also help control fish diseases and loss of natural resources. It has also been suggested that pollution, habitat fragmentation, and poor water quality may contribute to increased pathogenesis and mortality in fish. Increased disease incidence is difficult to assess, however, in part because of the complexity of pathogen transmission dynamics. Several environmental pathogens exist whose reservoir(s) and means of transmission …

Assessment Of Invasive Plants Along The Upper Passaic River, Susan Marie Jankovic

Theses, Dissertations and Culminating Projects

The distribution of invasive plants was determined along the floodplain of the Passaic River in three protected park regions. Specifically, Lord Stirling Park, Hatfield Swamp, and Great Piece Meadows were assessed to determine whether or not the top 29 invasive plants as identified by Snyder and Kaufman (2004) were present. Two of the three areas are strongly affected by urbanization which may be a contributing factor to the increase of invasive plants within them. Eleven out of the top twenty nine invasive plants in New Jersey were recorded: Multiflora rose (Rosa multiflora), Lesser celandine (Ranunculus ficaria), Japanese stiltgrass (Microstegium vimineum), …

Exposure To Ultraviolet Radiation Causes Proteomic Changes In Embryos Of The Purple Sea Urchin, Strongylocentrotus Purpuratus, Joseph Paul Campanale

Master's Theses

The amount of solar ultraviolet radiation (UVR, 290-400 nm) reaching Earth’s surface is increasing due to ozone depletion and global climate change. Embryos of the purple sea urchin, Strongylocentrotus purpuratus, provide an ideal system for examining how UVR affects developing marine organisms and cells in general. To model the protein-mediated cell cycle response to UV-irradiation, six batches of S. purpuratus embryos were exposed to UVR, monitored for delays in the first mitotic division and examined for global proteomic changes. Embryos from each batch were exposed to or protected from artificial UVR for 25 or 60 min. Embryos treated with …

Rapid Evolution Of Sex-Pheromone-Producing Enzyme In Drosophila, Troy R. Shirangi, Héloïse D. Dufour, Thomas M. Williams, Sean B. Carroll

Biology Faculty Publications

A wide range of organisms use sex pheromones to communicate with each other and to identify appropriate mating partners. While the evolution of chemical communication has been suggested to cause sexual isolation and speciation, the mechanisms that govern evolutionary transitions in sex pheromone production are poorly understood. Here, we decipher the molecular mechanisms underlying the rapid evolution in the expression of a gene involved in sex pheromone production in Drosophilid flies. Long-chain cuticular hydrocarbons (e.g., dienes) are produced female-specifically, notably via the activity of the desaturase DESAT-F, and are potent pheromones for male courtship behavior in Drosophila melanogaster. We …

Differential Mortality Drives Life-History Evolution And Population Dynamics In The Fish Brachyrhaphis Rhabdophora, Jerald B. Johnson, J. Jaime Zuniga-Vega

Faculty Publications

Life-history theory predicts that populations experiencing different levels of extrinsic mortality will evolve divergent reproductive strategies. Previous work in the live bearing fish Brachyrhaphis rhabdophora shows that individuals from populations that occur with piscivorous fish mature earlier and at smaller sizes and have more and smaller offspring than fish from populations without predators. However, until now, there have been no data to demonstrate that differences in mortality rates actually exist between predator and predator free sites. Here we present the results of a serial mark-recapture field study designed to estimate mortality rates in natural populations of B. rhabodophora from Costa …

Reverse Engineering Of Gene Regulatory Networks For Discovery Of Novel Interactions In Pathways Using Gene Expression Data, Tanwir Habib

Dissertations

A variety of chemicals in the environment have the potential to adversely affect the biological systems. We examined the responses of Rat (Rattus norvegicus) to the RDX exposure and female fathead minnows (FHM, Pimephales promelas) to a model aromatase inhibitor, fadrozole, using a transcriptional network inference approach. Rats were exposed to RDX and fish were exposed to 0 or 30mg/L fadrozole for 8 days. We analyzed gene expression changes using 8000 probes microarrays for rat experiment and 15,000 probe microarrays for fish. We used these changes to infer a transcriptional network. The central nervous system is remarkably plastic in its …

Predicting Leptodactylus (Amphibia, Anura, Leptodactylidae) Distributions: Broad-Ranging Versus Patchily Distributed Species Using A Presence-Only Environmental Niche Modeling Technique, Miguel Fernández, Daniel Cole, W. R. Heyer, Stephen Reichle, Rafael O. De Sá

Biology Faculty Publications

Locality data available for many, if not most, species of Neotropical frogs are based on written descriptions of the collecting sites, not on GPS device determined coordinate data. The pre-GPS device data are imprecise relative to GPS data. Niche modeling is a powerful technique for predicting geographic distributions that provides the best results when the locality data are precise. The purpose of this study is to determine whether imprecise historical locality data are sufficient such that niche modeling techniques can yield realistic new insights to species-level distributions. Two sets of frogs of the genus Leptodactylus that have known different kinds …

The Role Of Temperature And Desiccation Stress In Limiting The Local-Scale Distribution Of The Owl Limpet, Lottia Gigantea, Luke P. Miller, Christopher D. G. Harley, Mark W. Denny

Faculty Publications, Biological Sciences

1 Small-scale distributions of rocky intertidal organisms may be determined in part by temperature and desiccation stress during low tide and the ability of organisms to resist such stresses. Biophysical modelling techniques, coupled with data on the physiological tolerance of organisms can be used to predict the frequency and severity of abiotic stress events.

2 The limpet Lottia gigantea is a major competitor for primary space on rocky shores along the west coast of North America. The goal of this study was to quantify the thermal and desiccation tolerance of this species and to predict the frequency of stressful events …

Assessing Threat Of Introduction Of The Parthenogenetic Marbled Crayfish Marmorkrebs Into North American Waters, Stephanie A. Jimenez, Zen Faulkes

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Background/Question/Methods

Marmorkrebs are parthogenetic crayfish in the genus Procambarus. Their provenance is unknown, but they were discovered in hobbyists' aquaria in Germany in the mid 1990s, and have since been introduced into the North American pet trade. Marmorkrebs are a potential invasive pest species. For example, they have already been introduced into Madagascar, where they may threaten endemic crayfish species. We are trying to estimate the risk, and possible consequences, of any accidental introduction of Marmorkrebs into North American waters. First, we conducted an online survey of hobbyists who keep Marmorkrebs as pets to estimate how widely, and how …

Fecal-Sac Ingestion By Spotted Towhees, Jenny E. Mckay, Michael T. Murphy, Sarah Bartos Smith, Jennifer K. Richardson

Biology Faculty Publications and Presentations

Altricial nestlings encase excrement in fecal sacs that parents remove by either ingesting them or transporting them away from the nest. Ingestion may allow energetically or nutritionally deprived parents to recapture energy or nutrients that might be lost because of nestlings' inefficient digestion (the "parental-nutrition hypothesis"), but ingestion may also permit parents to avoid flights from the nest that interfere with parental care (e.g., brooding young; the "economic-disposal hypothesis"). We used a hypothetico-deductive approach to test the two hypotheses' ability to account for fecal-sac ingestion by the Spotted Towhee (Pipilo maculatus). We confirmed the parental-nutrition hypothesis' predictions that …

Serotonin Immunoreactive Cells And Nerve Fibers In The Mucosa Of The Rat Stomach, A P Gesase

Tanzania Journal of Science

The current study has showed the morphological features of serotonin (5-hydroxytryptamine) immunoreactivity in the pyloric mucosa of the rat stomach. The immunoreactive elements included the endocrine cells, mast cells and mucosal nerve fibers in the lamina propria. The immunopositive endocrine cells were oval in shape and located mostly in the basal part of the gastric glands. The cell contained a central non-staining area and the peripheral staining zone. The mast cells stained homogenously and appeared to be oval-round in shape. They were located in the upper, middle and basal parts of the mucosa. Serotonin immunoreactive nerve fibers with varicosities were …

Morphological Features Of Tyrosine Hydroxylase Immunoreactive Cells In The Mouse Islets Of Langerhans, A P Gesase, Y -I Satoh

Tanzania Journal of Science

The current immunohistochemical study used the antibody against tyrosine hydroxylase (TH) to observe the immunoreactive elements in the mouse pancreas. The results indicated the presence of immunoreactive nerve fibers and endocrine cells. The immunopositive nerve fibers appeared as thick and thin bundles; thick bundles were seen to run along the blood vessels giving out fine fibers to the wall. Varicose nerve fibers were seen in the islets of Langerhans and also in close association with the exocrine endpieces. The TH immunoreactive cells were oval-round in shape and some showed the central non-staining area and the dense staining peripheral zone. More …

Genetic Differentiation Of The Parasitoid, Cotesia Congregata (Say), Based On Host-Plant Complex, Georgia Karns

Theses and Dissertations

Endoparasitoids of herbivorous lepidopterans have intimate relationships with their host species as well as the plant on which their host develops. Characteristics of both hosts and plants can affect parasitoid success in tri-trophic systems and thus, drive diversification. Genetic differentiation was estimated for Cotesia congregata (Say) collected from two distinct host-plant complexes, Manduca sexta L. on tobacco (Nicotiana tabacum L.) and Ceratomia catalpae, (Haworth) on catalpa (Catalpa bignonioides Walker), in the mid-Atlantic region of North America using seven microsatellite loci and the mitochondrial COI locus. Microsatellite allele frequencies were differentiated based on host-plant complex, and COI haplotypes from individuals on …

Assessment Of Pre-Pcr Whole Genome Amplification Of Single Pollen Grains Using Flowering Dogwood (Cornus Florida), Candace Dillon

Theses and Dissertations

Studies of gene flow in natural plant populations often focus on either historical or abiotic dispersal methods (e.g. wind, water, gravity), but there is little information available on contemporary, animal-mediated pollen dispersal patterns. Emerging molecular laboratory techniques allow unprecedented insights into spatial patterns of pollen-mediated gene flow. However, to date, technical challenges have limited their widespread application. The genome of a pollen grain can be amplified via whole genome amplification (WGA) prior to traditional amplification via polymerase chain reaction (PCR) to prevent the stochastic effects associated with low copy number amplification. Even still, WGA can suffer from low success rates …

Sexual Selection In A Species With Exploded Leks: The White-Crowned Manakin (Pipra Pipra), Wendy P. Tori

Dissertations

Understanding what determines male reproductive success is central to sexual selection theory. The main goal of this dissertation was to examine the processes that shape female mate choice and male reproductive success in an exploded lek species: the White-crowned Manakin (Pipra pipra). The first chapter examined if females select males with certain genetic characteristics to gain indirect fitness benefits. Specifically, it tested whether females preferentially mate with unrelated males or males with high overall heterozygosity to increase the genetic diversity of their offspring. The second chapter examined if food resources within territories affect male mating success of territory …

Evolution And Maintenance Of Plumage Polymorphism: The Case Of The Red-Footed Booby (Sula Sula), Patricia Carvalho Baiao

Dissertations

The red-footed booby (Sula sula) is considered one of the most polymorphic seabirds, with three recognized major adult plumage types: (1) white; (2) white-tailed brown; and (3) brown, and several degrees of intermediates. The ratio of these color morphs varies among populations, with the white morph typically predominating. However, there are a few populations that present an inversed ratio of color morphs, such as Isla Europa in the Indian Ocean and the Galapagos archipelago, with the white-tailed brown or brown morphs predominating. I studied natural populations of red-footed boobies from three geographic locations, namely, the Galapagos archipelago, Johnston Atoll in …

Selective Herbivory By The Desert Woodrat (Neotoma Lepida) On Joshua Trees (Yucca Brevifolia), Monte P. Sanford, Nancy Huntly

Biology Faculty Publications

We studied herbivory by the desert woodrat (Neotoma lepida) on Joshua trees (Yucca brevifolia) in the Mojave Desert to determine whether N. lepida fed selectively based on leaf nitrogen content. We measured leaf nitrogen content and the location and amount of herbivory by woodrats on Y. brevifolia trees in southwestern Utah, USA. Neotoma lepida removed the outer tips of leaves (1/3 to 2/3 of total leaf length) but left leaf bases, which had lower nitrogen content, uneaten. Herbivory by N. lepida also was concentrated on rosettes that were oriented south, and these had significantly higher nitrogen …

Co-Occurrence With A Congeneric Species Predicts Life History And Morphological Diversification In The Mexican Livebearing Fish Poelicopsis Baenschi, Laura E. Scott

Theses and Dissertations

Understanding why some species coexist and others do not remains one of the fundamental challenges of ecology. While several lines of evidence suggest that closely related species are unlikely to occupy the same habitat because of competitive exclusion, there are many cases where closely related species do co-occur. Research comparing sympatric and allopatric populations of co-occurring species provides a framework to understand the role of phenotypic diversification in species coexistence. In this study I focus on the livebearing fish Poeciliopsis baenschi and ask if differences in phenotypic traits among populations can be explained by the presence or absence of the …

A Bac-Based Physical Map Of The Hessian Fly Genome Anchored To Polytene Chromosomes, Rajat Aggarwal, Thiago R. Benatti, Navdeep Gill, Chaoyang Zhao, Ming-Shun Chen, John P. Fellers, Brandon J. Schemerhorn, Jeff J. Stuart

Biology Faculty Articles

Background: The Hessian fly (Mayetiola destructor) is an important insect pest of wheat. It has tractable genetics, polytene chromosomes, and a small genome (158 Mb). Investigation of the Hessian fly presents excellent opportunities to study plant-insect interactions and the molecular mechanisms underlying genome imprinting and chromosome elimination. A physical map is needed to improve the ability to perform both positional cloning and comparative genomic analyses with the fully sequenced genomes of other dipteran species. Results: An FPC-based genome wide physical map of the Hessian fly was constructed and anchored to the insect's polytene chromosomes. Bacterial artificial chromosome (BAC) clones corresponding …

Presence Of Haemosporidia And Flaviviruses In Breeding Prothonotary Warblers (Protonotaria Citrea): An Analysis Of Spatial And Temporal Trends In Infection Prevalence And Associations With Reproductive Success, Elena Grillo

Theses and Dissertations

As Neotropical migratory birds, Prothonotary Warblers are exposed to parasites in both tropical and temperate regions and may act as dispersal agents between geographic areas. This study identifies the prevalence of Haemosporidia, West Nile Virus (WNV), and St. Louis Encephalitis virus (SLEV) in this species. A total of 71.6% of captured Prothonotary Warblers were infected with Haemosporidia during the 2008 breeding season, and infection prevalence increased throughout the season. This temporal change in prevalence is likely due to infection relapse and transmission of new infections. No correlations between reproductive effort and infection status were observed, nor were any associations between …

Heterosternuta Sulphuria (Coloptera: Dytiscidae) Occurence In The Sulphur Springs Headwater System And In Buffalo National River Tributaries (Arkansas, Usa): Current Distribution, Habitat Conditions, And Biomonitoring Framework, S.D. Longing, B.E. Haggard

Arkansas Water Resources Center Technical Reports

Heterosternuta sulphuria is an endemic aquatic species of concern in Arkansas, with a priority score of 80 out of 100 and a conservation rank of S1and G1. A need of the Arkansas Wildlife Action Plan (AWAP) was to obtain baseline information on distribution and population status of H. sulphuria. Here, we report new H. sulphuria records for 39 sites across 10 counties in the Ozark Highlands and Boston Mountain ecoregions and a determined habitat type of shallow margins and small bedrock pools of perennial streams and spring seeps. Few habitat patches were observed per site because detection was typically rapid …

A Continent-Wide Clone: Population Genetic Variation Of The Invasive Plant Hieracium Aurantiacum (Orange Hawkweed; Asteraceae) In North America, Eli S. Loomis, Lila Fishman

Biological Sciences Faculty Publications

We investigated the population genetic structure of the invasive plant Hieracium aurantiacum (Asteraceae), a facultative apomict. We generated amplified fragment length polymorphism fingerprints for H. aurantiacum samples from across its invasive range in North America (N = 226) and from six other North American native and invasive Hieracium species (N = 60). Almost no genetic variability was found in the North American H. aurantiacum across locations from Alaska and Oregon to Pennsylvania and Ontario (clonal diversity = 0.035). In contrast, other Hieracium species showed a range of clonal diversities (range = 0.154-1.0). The single H. aurantiacum genotype that dominated the …

Bar-Coded Pyrosequencing Reveals Shared Bacterial Community Properties Along The Temperature Gradients Of Two Alkaline Hot Springs In Yellowstone National Park, Scott R. Miller, Aaron L. Strong, Kenneter L. Jones, Mark C. Ungerer

Biological Sciences Faculty Publications

An understanding of how communities are organized is a fundamental goal of ecology but one which has historically been elusive for microbial systems. We used a bar-coded pyrosequencing approach targeting the V3 region of the bacterial small-subunit rRNA gene to address the factors that structure communities along the thermal gradients of two alkaline hot springs in the Lower Geyser Basin of Yellowstone National Park. The filtered data set included a total of nearly 34,000 sequences from 39 environmental samples. Each was assigned to one of 391 operational taxonomic units (OTUs) identified by their unique V3 sequence signatures. Although the two …

Description Of Thermonectus Nigrofasciatus And Rhantus Binotatus (Coleoptera:-Dytiscidae) Mating Behavior, Lauren M. Cleavall

Biology ETDs

Models of sexual conflict predict that diving beetles should respond morphologically and behaviorally during mating events to overcome the opposing sex. Morphological and behavioral adaptations may result from pressures by one sex to overcome resistance to mating attempts of the opposite sex. Morphological data supports an evolutionary arms race in diving beetles (Dytiscidae) exhibited in a series of adaptations attributable to sexual conflict between males and females. Males of certain Dytiscinae have sucker shaped adhesion setae on their front and mid tarsi to improve attachment to the females elytra prior to and during mating, whereas females have evolved grooves, ridges, …

American Kestrel Reproduction: Evidence For The Selection Hypothesis And The Role Of Dispersal, Karen Steenhof, Julie A. Heath

Biology Faculty Publications and Presentations

Many hypotheses attempt to explain why younger, less experienced birds have relatively low reproductive output. We evaluated reproductive patterns of marked American Kestrels Falco sparverius nesting in boxes in southwestern Idaho from 1992 to 2006 to test predictions of these hypotheses. Results were consistent with the selection (differential mortality) hypothesis and did not support the constraint, restraint or recruitment hypotheses. Most known-age Kestrels nested in their first year of life, and there was no apparent short-term or long-term reproductive advantage to delayed breeding. The number of years that Kestrels nested in study area boxes ranged from 1 to 6 years, …

Section Abstracts: Biology And Microbiology & Molecular Biology

Virginia Journal of Science

Abstracts of the Biology Section and Microbiology & Molecular Biology for the 87th Annual Meeting of the Virginia Academy of Science, May 27th-29th, 2009, Virginia Commonwealth University, Richmond, VA.