Digital Commons Network^™

Unionid Mussels From Nearshore Zones Of Lake Erie, Todd D. Crail, Robert A. Krebs, David T. Zanatta

Biological, Geological, and Environmental Faculty Publications

Concern exists that the introduction of dreissenid mussels following long-term effects of pollution may have completely eliminated native mussel species from Lake Erie. Natural seiche events were used to facilitate surveys for live unionids on five occasions in the western basin of Lake Erie and Sandusky Bay between 2007 and 2009, and beach and estuary surveys were conducted at numerous additional sites between 2004 and 2009. Sixteen unionid species were found living in or near Lake Erie, including six sites in the nearshore zone of the lake. Each community consisted of live individuals from two to eight species, and evidence …

Regional Scale Monitoring Of Methane Production By Dairy Farm Ungulates; A Proposal To The National Science Foundation (Nsf) And The National Ecological Observatory Network (Neon, Inc.), Lindsey Anne Peterson

Biological Sciences

No abstract provided.

Patatin-Related Phospholipase Pplaiiiβ-Induced Changes In Lipid Metabolism Alter Cellulose Content And Cell Elongation In Arabidopsis, Xuemin Wang, Maoyin Li, Sung Chul Bahn, Liang Guo, William Musgrave, Howard Berg, Ruth Welti

Biology Department Faculty Works

The release of fatty acids from membrane lipids has been implicated in various plant processes, and the patatin-related phospholipases (pPLAs) constitute a major enzyme family that catalyzes fatty acid release. The Arabidopsis thaliana pPLA family has 10 members that are classified into three groups. Group 3 pPLAIII has four members but lacks the canonical lipase/esterase consensus catalytic sequences, and their enzymatic activity and cellular functions have not been delineated. Here, we show that pPLAIIIβ hydrolyzes phospholipids and galactolipids and additionally has acyl-CoA thioesterase activity. Alterations of pPLAIIIβ result in changes in lipid levels and composition. pPLAIIIβ-KO plants have longer leaves, …

The Composition, Stability, And Kinship Of Reproductive Coalitions In A Lekking Bird, Thomas Ryder, John Blake, Patricia Parker, Bette Loiselle

Biology Department Faculty Works

Male vertebrates often form reproductive coalitions to gain access to or defend females. One striking example occurs in the wire-tailed manakin (Pipra filicauda; Aves: Pipridae), where pairs of males form coalitions to display for females on leks. Here, we use data from a long-term study of the wire-tailed manakin to quantify the composition and stability of display coalitions, to examine how coalitions influence behavioral variation, and to determine if males gain indirect genetic benefits from coalition membership. Our data show that coalitions were most often formed between males of different status and that the presence of coalition partners increased a …

The Forgotten Stage Of Forest Succession: Early-Successional Ecosystems On Forest Sites, Mark E. Swanson, Jerry F. Franklin, Robert L. Beschta, Charles M. Crisafulli, Dominick A. Dellasala, Richard L. Hutto, David B. Lindenmaver, Frederick J. Swanson

Biological Sciences Faculty Publications

Early-successional forest ecosystems that develop after stand-replacing or partial disturbances are diverse in species, processes, and structure. Post-disturbance ecosystems are also often rich in biological legacies, including surviving organisms and organically derived structures, such as woody debris. These legacies and post-disturbance plant communities provide resources that attract and sustain high species diversity, including numerous early-successional obligates, such as certain woodpeckers and arthropods. Early succession is the only period when tree canopies do not dominate the forest site, and so this stage can be characterized by high productivity of plant species (including herbs and shrubs), complex food webs, large nutrient fluxes, …

Assessment Of Pathways For The Introduction And Spread Of Mycobacterium Bovis In The United States, Katie Portacci, Jason Lombard, Lauren Abrahamsen, Eric Bush, Charles Fossler, Robert Harris, Kamina Johnson, Ryan S. Miller, Dianna Mitchell, Randy Pritchard, Steven Sweeney, Todd Weaver

Zoonotics and Wildlife Disease: Publications

Bovine tuberculosis (TB) was responsible for more losses among U.S. farm animals in the early 20th century than all other infectious diseases combined. The Cooperative State-Federal Tuberculosis Eradication Program (established in 1917 and administered by APHIS, State animal health agencies, and U.S. livestock producers) has nearly eradicated bovine TB from the nation’s livestock population. However, despite the many accomplishments of the program, bovine TB remains a serious and costly disease of livestock in the United States. In 1992, VS conducted an assessment to identify pathways for the introduction and spread of bovine TB, in order to develop the most effective …

Blood-Brain Barrier Impairment In An Animal Model Of Mps Iii B, Svitlana N. Garbuzova-Davis, Michael Louis, Edward M. Haller, Hiranya M. Derasari, Ashley E. Rawls, Paul R. Sanberg

Integrative Biology Faculty and Staff Publications

Background: Sanfilippo syndrome type B (MPS III B) is caused by a deficiency of α-N-acetylglucosaminidase enzyme, leading to accumulation of heparan sulfate within lysosomes and eventual progressive cerebral and systemic multiple organ abnormalities. However, little is known about the competence of the blood-brain barrier (BBB) in MPS III B. BBB dysfunction in this devastating disorder could contribute to neuropathological disease manifestations.

Methodology/Principal Findings: In the present study, we investigated structural (electron microscope) and functional (vascular leakage) integrity of the BBB in a mouse model of MPS III B at different stages of disease, focusing on brain structures known to experience …

Comparative Biology Of Sympatric Red Diamond And Southern Pacific Rattlesnakes In Southern California, Eric Allen Dugan

Loma Linda University Electronic Theses, Dissertations & Projects

I compared the biology of two sympatric rattlesnakes within the context of resource use and niche partitioning. Using radio-telemetry and mark-recapture involving passive integrated transponders (PIT) tags, I studied Red Diamond (Crotalus ruber) and Southern Pacific (C. oreganus helleri) Rattlesnakes in Chino Hills State Park, California, from March 2003 through March 2010. The first of three studies compared the two species in terms of home range size, movements, and mating phenology. Crotalus o. helleri occupied larger home ranges than C. ruber, and exhibited 1.9–2.8-fold greater movement distances (depending on year) than C. ruber. Mating phenology also varied, with C. ruber …

The Relationship Between 11-Ketotestosterone, Cortisol, And Testosterone And Condition Index For Poecilia Reticulata, Shelly Gupta, Brandy G. Kalbach

Biological Sciences

The guppy, Poecilia reticulata, is a common study organism for behavioral and other ecological experiments (Houde, 1997).  As far as we know, no previous data have been compiled regarding hormones and condition index of guppies.  In this experiment we examined the relationship between circulating levels of three hormones (testosterone, 11-ketotestosterone and cortisol) and condition index in males and also made comparisons among the hormone levels, for three guppy sites from the northern range of Trinidad – Aripo River, Marianne River and Small Crayfish River.  Hormone samples were obtained using non-invasive water borne techniques and quantified by our collaborator.  The condition …

Population Proteomics: Quantitative Variation Within And Among Populations In Cardiac Protein Expression, Bernard Rees

Biological Sciences Faculty Publications

Population analysis of gene expression is typically achieved by quantifying levels of mRNA; however, gene expression is also a function of protein translation and turnover. Therefore, a complete understanding of population variation in gene expression requires quantitative knowledge of protein expression within and among natural populations. We used two dimensional fluorescence difference gel electrophoresis (2D-DIGE) to quantitatively compare expression of heart ventricle proteins among 18 individuals in three populations of the teleost fish Fundulus. Among populations, expressions between orthologous proteins and mRNAs were generally positively correlated. Additionally, similar to the pattern of cardiac mRNA expression for the same populations, we …

Vocalization Behavior Of The Endangered Bahama Oriole (Icterus Northropi): Ontogenetic, Sexual, Temporal, Duetting Pair, And Geographic Variation, Valerie A. Lee

Loma Linda University Electronic Theses, Dissertations & Projects

Many birds communicate via a diverse set of vocalizations, but the contexts, roles, and structure of their varied songs and calls may change with age, differ between sexes, and vary temporally and geographically. In New World orioles, most tropical species exhibit the ancestral states of sexual monochromatism (both sexes have similar plumage) and monovocalism (both sexes sing and often duet together), whereas migratory temperate species tend toward dichromatism (males brightly colored and females drab) and divocalism (males sing almost exclusively). In this study, I examined the vocalizations of the Bahama Oriole, a non-migratory, monochromatic species, to learn where it fits …

A Synthesis Of Plant Invasion Effects On Biodiversity Across Spatial Scales, Kristin I. Powell, Jonathan M. Chase, Tiffany M. Knight

Biology Faculty Research

PREMISE OF THE STUDY:

Invasive plant species are typically thought to pose a large threat to native biodiversity, and local-scale studies typically confirm this view. However, plant invaders rarely cause regional extirpations or global extinctions, causing some to suggest that invasive species' influence on native biodiversity may not be so dire. We aim to synthesize the seemingly conflicting literature in plant invasion biology by evaluating the effects of invasive plant species across spatial scales.

METHODS:

We first conducted a meta-analysis on the effects of invasive plants on the species richness of invaded communities across a range of spatial extents. We …

New Implications On Genomic Adaptation Derived From The Helicobacter Pylori Genome Comparison, Edgar Eduardo Lara-Ramírez, Aldo Segura-Cabrera, Xianwu Guo, Gongxin Yu, Carlos Armando García-Pérez, Mario A. Rodríguez-Pérez

Biology Faculty Publications and Presentations

Background: Helicobacter pylori has a reduced genome and lives in a tough environment for long-term persistence. It evolved with its particular characteristics for biological adaptation. Because several H. pylori genome sequences are available, comparative analysis could help to better understand genomic adaptation of this particular bacterium.

Principal Findings: We analyzed nine H. pylori genomes with emphasis on microevolution from a different perspective. Inversion was an important factor to shape the genome structure. Illegitimate recombination not only led to genomic inversion but also inverted fragment duplication, both of which contributed to the creation of new genes and gene family, and further, …

A Specific Interaction Of Small Molecule Entry Inhibitors With The Envelope Glycoprotein Complex Of The Junín Hemorrhagic Fever Arenavirus, Celestine J. Thomas, Hedi E. Casquilho-Gray, Joanne York, Dianne L. Decamp, Dongcheng Dai, Erin B. Petrilli, Dale L. Boger, Richard A. Slayden, Sean M. Amberg, Stephen Sprang, Jack H. Nunberg

Biological Sciences Faculty Publications

Arenaviruses are responsible for acute hemorrhagic fevers worldwide and are recognized to pose significant threats to public health and biodefense. Small molecule compounds have recently been discovered that inhibit arenavirus entry and protect against lethal infection in animal models. These chemically distinct inhibitors act on the tripartite envelope glycoprotein (GPC) through its unusual stable signal peptide subunit to stabilize the complex against pH-induced activation of membrane fusion in the endosome. Here, we report the production and characterization of the intact transmembrane GPC complex of Junín arenavirus and its interaction with these inhibitors. The solubilized GPC is antigenically indistinguishable from the …

Real-Time Dynamic Imaging Of Virus Distribution In Vivo, Sean E. Hofherr, Kristen E. Adams, Christopher Y. Chen, Shannon May, Eric A. Weaver, Michael A. Barry

School of Biological Sciences: Faculty Publications

The distribution of viruses and gene therapy vectors is difficult to assess in a living organism. For instance, trafficking in murine models can usually only be assessed after sacrificing the animal for tissue sectioning or extraction. These assays are laborious requiring whole animal sectioning to ascertain tissue localization. They also obviate the ability to perform longitudinal or kinetic studies in one animal. To track viruses after systemic infection, we have labeled adenoviruses with a near-infrared (NIR) fluorophore and imaged these after intravenous injection in mice. Imaging was able to track and quantitate virus particles entering the jugular vein simultaneous with …

Increasing Liana Abundance And Biomass In Tropical Forests: Emerging Patterns And Putative Mechanisms, Stefan A. Schnitzer, Frans Bongers

Biological Sciences Faculty Research and Publications

Tropical forests are experiencing large‐scale structural changes, the most apparent of which may be the increase in liana (woody vine) abundance and biomass. Lianas permeate most lowland tropical forests, where they can have a huge effect on tree diversity, recruitment, growth and survival, which, in turn, can alter tree community composition, carbon storage and carbon, nutrient and water fluxes. Consequently, increasing liana abundance and biomass have potentially profound ramifications for tropical forest composition and functioning. Currently, eight studies support the pattern of increasing liana abundance and biomass in American tropical and subtropical forests, whereas two studies, both from Africa, do …

Species Trees And Species Delimitation With Multilocus Data And Coalescent-Based Methods: Resolving The Speciation History Of The Liolaemus Darwinii Group (Squamata, Tropiduridae), Arley Camargo Bentaberry

Theses and Dissertations

The inference of species boundaries and phylogenetic relationships are fundamental for evolutionary, ecological, and conservation studies. The resolution of species boundaries and the inference of phylogenetic relationships among species are required to define the units of analysis and to find the most closely related units for evaluating alternative models of speciation. I highlight lizards as model organisms for ecological and evolutionary studies, emphasizing their contributions to advances in understanding linkages between phylogeography and speciation. In this dissertation, I focus on the phylogenetic relationships of the lizards in the Liolaemus darwinii group, and the species boundaries of a nested clade within …

Analysis Of Common And Specific Mechanisms Of Liver Function Affected By Nitrotoluene Compounds, Youping Deng, Sharon A. Meyer, Xin Guan, Barbara Lynn Escalon, Junmei Ai, Mitchell S. Wilbanks, Ruth Welti, Natàlia Garcia-Reyero, Edward J. Perkins

Faculty Publications

Background: Nitrotoluenes are widely used chemical manufacturing and munitions applications. This group of chemicals has been shown to cause a range of effects from anemia and hypercholesterolemia to testicular atrophy. We have examined the molecular and functional effects of five different, but structurally related, nitrotoluenes on using an integrative systems biology approach to gain insight into common and disparate mechanisms underlying effects caused by these chemicals.

Methodology/Principal Findings: Sprague-Dawley female rats were exposed via gavage to one of five concentrations of one of five nitrotoluenes [2,4,6-trinitrotoluene (TNT), 2-amino-4,6-dinitrotoluene (2ADNT) 4-amino-2,6-dinitrotoulene (4ADNT), 2,4-dinitrotoluene (2,4DNT) and 2,6-dinitrotoluene (2,6DNT)] with necropsy …

Acquired Traits Revisited, William D. Stansfield

Biological Sciences

Most biology texts villify Lamarck's concept of “inheritance of acquired characters” and leave the impression that all acquired characters are never transmitted to offspring. However, recent research indicates that this is not true! Some “acquired” traits are inherited. I profile some of these striking cases and their importance for evolution and for understanding a broader epigenetic context for heredity and ontogeny (the emerging field of “evo-devo”). Further, I discuss how such cases, even considered as exceptions, contribute to understanding the nature of science, both the role of general rules in biology and the occurrence of conceptual change, or paradigm shifts.

Volatile Chemicals From Leaf Litter Are Associated With Invasiveness Of A Neotropical Weed In Asia, Inderjit, Heather Evans, Christoph Crocoll, Devika Bajpai, Rajwant Kaur, Yu-Long Feng, Carlos Silva, Jacinto Treviño Carreón, Alfonso Valiente-Banuet, Jonathan Gershenzon, Ragan M. Callaway

Biological Sciences Faculty Publications

Some invasive plant species appear to strongly suppress neighbors in their nonnative ranges but much less so in their native range. We found that in the field in its native range in Mexico, the presence of Ageratina adenophora, an aggressive Neotropical invader, was correlated with higher plant species richness than found in surrounding plant communities where this species was absent, suggesting facilitation. However, in two nonnative ranges, China and India, A. adenophora canopies were correlated with much lower species richness than the surrounding communities, suggesting inhibition. Volatile organic compound (VOC) signals may contribute to this striking biogeographical difference and …

Latitudinal Variation In Top-Down And Bottom-Up Control Of A Salt Marsh Food Web, Laurie B. Marczak, C.-K. Ho, K. Wieski, H. Vu, R. F. Denno, S. C. Pennings

Biological Sciences Faculty Publications

The shrub Iva frutescens, which occupies the terrestrial border of U.S. Atlantic Coast salt marshes, supports a food web that varies strongly across latitude. We tested whether latitudinal variation in plant quality (higher at high latitudes), consumption by omnivores (a crab, present only at low latitudes), consumption by mesopredators (ladybugs, present at all latitudes), or the life history stage of an herbivorous beetle could explain continental-scale field patterns of herbivore density. In a mesocosm experiment, crabs exerted strong top-down control on herbivorous beetles, ladybugs exerted strong top-down control on aphids, and both predators benefited plants through trophic cascades. Latitude …

Floodplain Succession And Soil Nitrogen Accumulation On A Salmon River In Southwestern Kamchatka, Michael R. Morris, Jack Arthur Stanford

Biological Sciences Faculty Publications

We documented riparian primary succession on an expansive floodplain (Kol River, Kamchatka, Russian Federation) that receives large nitrogen subsidies from spawning Pacific salmon. As is typical of primary succession, new alluvial deposits in the lower Kol floodplain were nitrogen poor (200 kg persulfate N/ha to 10 cm soil depth); however, nitrogen accumulated rapidly, and soils contained 1600 kg N/ha (to 10 cm + the litter layer) by 20 years. Soil nitrogen approached an asymptote at 2500 kg N/ha by 80 years. Nitrogen-fixing Alnus trees were a minor component of the forest community during the first 20 years of succession. However, …

T-705 (Favipiravir) Inhibition Of Arenavirus Replication In Cell Culture, Michelle Mendenhall, Andrew Russell, Terry Juelich, Emily L. Messina, Donald F. Smee, Alexander N. Freiberg, Michael R. Holbrook, Yousuke Furuta, Juan-Carlos De La Torre, Jack H. Nunberg, Brian B. Gowen

Biological Sciences Faculty Publications

A number of New World arenaviruses (Junin [JUNV], Machupo [MACV], and Guanarito [GTOV] viruses) can cause human disease ranging from mild febrile illness to a severe and often fatal hemorrhagic fever syndrome. These highly pathogenic viruses and the Old World Lassa fever virus pose a significant threat to public health and national security. The only licensed antiviral agent with activity against these viruses, ribavirin, has had mixed success in treating severe arenaviral disease and is associated with significant toxicities. A novel pyrazine derivative currently in clinical trials for the treatment of influenza virus infections, T-705 (favipiravir), has demonstrated broad-spectrum activity …

Effects Of Cinnamaldehyde On The Glucose Transport Activity Of Glut1, Christina Plaisier, Alexandra Cok, Jordan Scott, Adeleye Opejin

University Faculty Publications and Creative Works

There is accumulating evidence that cinnamon extracts contain components that enhance insulin action. However, little is know about the effects of cinnamon on non-insulin stimulated glucose uptake. Therefore, the effects of cinnamaldehyde on the glucose transport activity of GLUT1 in L929 fibroblast cells were examined under both basal conditions and conditions where glucose uptake is activated by glucose deprivation. The data reveal that cinnamaldehyde has a dual action on the glucose transport activity of GLUT1. Under basal conditions it stimulates glucose uptake and reaches a 3.5 fold maximum stimulation at 2.0 mM. However, cinnamaldehyde also inhibits the activation of glucose …

Reciprocal Regulation Of Trek-1 Channels By Arachidonic Acid And Crh In Mouse Corticotropes, Andy K. Lee, James L. Smart, Marcelo Rubinstein, Malcolm J. Low, Amy Tse

Faculty Publications - Department of Biological & Molecular Science

Arachidonic acid (AA) is generated in the anterior pituitary gland upon stimulation by the ACTH secretagogue, CRH. Using the patch clamp technique,we examined the action of AA on the excitability of single pituitary corticotropes obtained from a transgenic mouse strain that expresses the enhanced green fluorescent protein driven by the proopiomelanocortin promoter. CRH evoked depolarization, but AA caused hyperpolarization. Under voltage clamp condition, AA caused a rapid inhibition of the delayed rectifier K current and then increased a background K current. Inhibition of AA metabolism did not prevent the activation of the K current by AA, suggesting a direct action …

Is Wildlife Going To The Dogs? Impacts Of Feral And Free-Roaming Dogs On Wildlife Populations, Julie K. Young, Kirk A. Olson, Richard P. Reading, Sukh Amgalanbaatar, Joel Berger

Biological Sciences Faculty Publications

In human-populated landscapes, dogs (Canis familiaris) are often the most abundant terrestrial carnivore. However, dogs can significantly disrupt or modify intact ecosystems well beyond the areas occupied by people. Few studies have directly quantified the environmental or economic effects of free-roaming and feral dogs. Here, we review wildlife-dog interactions and provide a case study that focuses on interactions documented from our research in Mongolia to underscore the need for studies designed to best determine how dogs affect native wildlife and especially imperiled populations. We suggest additional research, public awareness campaigns, and the exclusion of dogs from critical wildlife habitat. The …

Plasticity In Patterns Of Histone Modifications And Chromosomal Proteins In Drosophila Heterochromatin, Nicole Riddle, Aki Minoda, Peter Kharchenko, Artyom Alekseyenko, Yuri Schwartz, Michael Tolstorukov, Andrey Gorchakov, Jacob Jaffe, Cameron Kennedy, Daniela Linder-Basso, Sally Peach, Gregory Shanower, Haiyan Zheng, Mitzi Kuroda, Vincenzo Pirrotta, Peter Park, Sarah C.R. Elgin, Gary Karpen

Biology Faculty Research

Eukaryotic genomes are packaged in two basic forms, euchromatin and heterochromatin. We have examined the composition and organization of Drosophila melanogaster heterochromatin in different cell types using ChIP-array analysis of histone modifications and chromosomal proteins. As anticipated, the pericentric heterochromatin and chromosome 4 are on average enriched for the "silencing" marks H3K9me2, H3K9me3, HP1a, and SU(VAR)3-9, and are generally depleted for marks associated with active transcription. The locations of the euchromatin-heterochromatin borders identified by these marks are similar in animal tissues and most cell lines, although the amount of heterochromatin is variable in some cell lines. Combinatorial analysis of chromatin …

Aposematic Signal Variation Predicts Male-Male Interactions In A Polymorphic Poison Frog, Laura Crothers, Eben Gering, Molly Cummings

Biology Faculty Articles

Many species use conspicuous “aposematic” signals to communicate unpalatability/unprofitability to potential predators. Although aposematic traits are generally considered to be classic examples of evolution by natural selection, they can also function in the context of sexual selection, and therefore comprise exceptional systems for understanding how conspicuous signals evolve under multifarious selection. We used males from a highly territorial poison frog species in a dichotomous choice behavioral test to conduct the first examination of how aposematic signal variation influences male–male interactions. Our results reveal two behavioral patterns: (1) male dorsal brightness influences the behaviors of male conspecifics such that males approach …

Is Wildlife Going To The Dogs? Impacts Of Feral And Free-Roaming Dogs On Wildlife Populations, Julie K. Young, Kirk A. Olson, Richard P. Reading, Sukh Amgalanbaatar, Joel Berger

Wildland Resources Faculty Publications

In human-populated landscapes, dogs (Canis familiaris) are often the most abundant terrestrial carnivore. However, dogs can significantly disrupt or modify intact ecosystems well beyond the areas occupied by people. Few studies have directly quantified the environmental or economic effects of free-roaming and feral dogs. Here, we review wildlife-dog interactions and provide a case study that focuses on interactions documented from our research in Mongolia to underscore the need for studies designed to best determine how dogs affect native wildlife and especially imperiled populations. We suggest additional research, public awareness campaigns, and the exclusion of dogs from critical wildlife habitat. The …

A Report Of The Effects Of Fishing Advisory Group (Efag) Meeting (2 – 3 November 2010) And The Western Rock Lobster Ecological Effects Of Fishing Research Plan Revised And Updated By The Effects Of Fishing Advisory Group (2 – 3 November 2010), Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.