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A Long-Term Control Project For An Invasive Plant: Assessment Of Phragmites Australis Reduction And Redevelopment Of Native Vegetation In Interdunal Swales Of Sandy Neck Barrier Beach, Cape Cod, Massachusetts, Dena Tomassi

Biology Masters Theses Collection

Phragmites australis is a perennial wetland grass that is native to North America. However, salt marshes, estuaries, and other wetlands throughout the northeast USA and Canada have witnessed a dramatic range expansion and population increase of the introduced genetic variant Phragmites australis haplotype M (Saltonstall 2002), with loss of native vegetation through competitive exclusion. Within the dune system of Sandy Neck Barrier Beach, freshwater wetland swales form in low elevation areas, which harbor a diverse wetland plant community dominated by shrubs, and sedges -- and including some rare and endangered species. To conserve and protect these wetland plant associations, annual …

Nr1l: A Novel Nuclear Receptor Group Activated By Juvenile Hormone Analogs, Yangchun Li

All Theses

Annotation of the Daphnia pulex nuclear receptors revealed a novel group of three receptors designated NR1L, and named HR97a/b/g because of their similarity to the HR96 receptors involved in xenobiotic detection. We cloned and sequenced the three receptors from a related species often used in aquatic toxicology studies, Daphnia magna, and then analyzed their genomic structure and conducted phylogenetic studies. Phylogenetic studies confirmed that the HR97s do form a distinct group with HR97g being the precursor of HR97a and b. They also confirmed that the HR97 receptors are related to the HR96 (NR1J) receptors, and the VDR/CAR/PXR (NR1I) group. Mining …

Repression Of Multiple Cyp2d Genes In Mouse Using A Single Sirna Construct, Omaima Elraghy

All Theses

The CYP2D subfamily is the second most important subfamily of hepatic drug metabolizing CYPs. In mouse, there are nine CYP2D subfamily members, while humans have only one highly polymorphic CYP2D member, CYP2D6. siRNA was used to repress the expression of multiple isoforms of mouse CYP2D in primary mouse hepatocytes with one siRNA construct. Successful knockdown of CYP function by RNAi may allow for further study of CYP2D function. Q-PCR demonstrated that male CD-1 mouse primary hepatocytes express Cyp2d10, Cyp2d11, Cyp2d22, and Cyp2d26; however the male specific and growth hormone-dependent, Cyp2d9, was not detected. Four different siRNAs were designed; Cyp2d-KD1 and …

Effects Of Developmental Conditions On Nestling American Kestrel (Falco Sparverius) Corticosterone Concentrations, Erin H. Strasser, Julie A. Heath

Biology Faculty Publications and Presentations

How nestling birds respond to stressful situations may constitute an important survival component that has lasting developmental effects on the hypothalamic pituitary adrenal (HPA) axis. As birds are exposed to increasing amounts of potential anthropogenic stressors through land use change, understanding how these factors contribute to HPA development is important. We examined whether conditions experienced during the nestling stage affected free-living American Kestrel (Falco sparverius) HPA activity prior to fledging. Kestrels experienced varying levels of human disturbance around their nest and we classified this environmental exposure as high or low environmental human disturbance based on traffic patterns and …

The Health Status, Concerns, And Reform In Uruguay With An Emphasis On Health Promotion Programs Geared Towards The Care And Development Of The Country's Children And Adolescents, Melissa Raquel Ramírez

Honors Scholar Theses

This study was conducted in Montevideo, Uruguay, where I examined the actions that the country and society as a whole, its various communities, the Uruguayan government, and the people take in order to prevent disease and promote a healthy society. An ethnographic experiential and evidence-based approach, including personal experience, interviews, and official government documents, was used to fully describe the way the system operates. Due to Uruguay's demographic characteristics, particular attention was paid to children and adolescents. For this thesis, Uruguay is described in terms of its history, physical and mental health issues, society's shared health concerns, and its vulnerable …

Avian Influenza In Migratory Birds In The United States, 2007–2009, And Effects Of September Hunting Seasons On Survival, Harvest, And Recovery Rates Of Canada Geese Banded In Southeast Nebraska, Scott R. Groepper

School of Natural Resources: Dissertations, Theses, and Student Research

Highly-pathogenic avian influenza virus (HPAIV H5N1) poses risks to wild birds, poultry, and humans. Personnel with the United States Department of Agriculture-Animal Plant Health Inspection Service-Wildlife Services, state, and tribal wildlife agencies collected 168,940 samples from migratory birds from 2007 to 2009 to test for presence of HPAIV H5N1. No HPAIV was found, but other subtypes were discovered, including H5 and H7. I estimated prevalence of avian influenza virus by flyway and found prevalence was lowest each year in the Atlantic Flyway (6.7%–8.3%), highest in the Pacific Flyway in 2007 (13.3%) and 2008 (13.4%), and highest in the Mississippi Flyway …

Ornamentation, Behavior, And Maternal Effects In The Female Northern Cardinal, Caitlin Winters

Master's Theses

This study seeks to understand the relationship between ornamentation, maternal effects, and behavior in the female Northern Cardinal (Cardinalis cardinalis). Female birds possess ornaments that indicate a number of important known aspects of quality and are usually costly to maintain. However, the extent to which female specific traits, such as maternal effects, are indicated is less clear. It is predicted by the Good Parent Hypothesis that this information should be displayed through intraspecific signal communication. Specifically, androgens and carotenoids are of interest in this study because both are linked to ornamentation, and are also important egg components that …

Feeding Selectivity And Habitat Usage Of Esox Americanus, Scott Richard Clark

Master's Theses

Patterns of piscine prey selection and habitat usage of Esox americanus were assessed through a series of field and experimental studies. Although few detailed studies exist on the foraging behavior and habitat usage of E. americanus, throughout its range it may be an important trophic component in maintaining fish assemblage structure in many lower order streams. Across 17 sampled streams, the presence of E. americanus among reaches within streams was found to be strongly correlated with increasing levels of habitat complexity. Reaches occupied by E. americanus featured increased amounts of in-stream physical structure, increased variability in stream width and …

Diet And Feeding-Related Morphometrics Of The Blackstripe Topminnow, Fundulus Notatus, In Allotropic And Syntopic Populations With The Blackspotted Topminnow, Fundulus Olivaceus, Charles Michael Champagne

Master's Theses

The Fundulus notatus species complex consists of three described species: F. notatus, F. olivaceus and F. euryzonus. Both F. notatus and F. olivaceus have broad overlapping ranges with many populations being found within and outside of contact zones. Contact zones are generally found in midreaches with F. olivaceus dominating headwaters and F. notatus in larger rivers downstream. Both species share similar ecological niches so the mechanism allowing for stable coexistence in contact zones is unknown. The purpose of this study was to examine variability in diet and feeding morphology of F. notatus in syntopic and allotopic populations across …

The Cellular Model Of Eastern Oyster (Grassostrea Virginica) Shell Formation, Andrew S. Mount, Neeraj V. Gohad, Karolyn Hansen, Mary Beth Johnstone, Douglas C. Hansen

Biology Faculty Publications

No abstract provided.

Significance Of Increased Tissue Transglutaminase In Hormone Refractory Prostate Cancer, Amy L. Han

Dissertations and Theses (Open Access)

The progression of hormone responsive to hormone refractory prostate cancer poses a major clinical challenge in the successful treatment of prostate cancer. The hormone refractory prostate cancer cells exhibit resistance not only to castrate levels of testosterone, but also to other therapeutic modalities and hence become lethal. Currently, there is no effective treatment available for managing this cancer. These observations underscore the urgency to investigate mechanism(s) that contribute to the progression of hormone-responsive to hormone-refractory prostate cancer and to target them for improved clinical outcomes.

Tissue transglutaminase (TG2) is a multifunctional pro-inflammatory protein involved in diverse physiological processes such as …

The Relations Among Laterality, Cortisol, And Approach-Avoidance Behavior In Garnett's Bushbaby (Otolemur Garnettii), David Burton Hanbury

Dissertations

Many studies to date have demonstrated that approach and avoidance behaviors are processed asymmetrically in the brain and may be reflected in measures such as handedness. The purpose of this study was to extend work in primates on this topic to Garnett’s bushbaby, a prosimian species. Furthermore, to determine whether measures in addition to handedness relate to approach-avoidance behavior, lateralized differences in tympanic membrane temperature were assessed. Cortisol measures were also obtained to determine whether it was related approach-avoidance behavior and handedness. Eleven captive-born Garnett’s bushbabies (Otolemur garnettii) were evaluated for handedness and responsiveness to novelty. Moreover, the …

Monitoring Atrazine-Degrading And Atrazine-Tolerant Bacterial Populations In Lower Rio Grande Valley Agricultural Canals Using Quantitative-Pcr And Internal Atza Primers, Ibdanelo Cortez

Theses and Dissertations - UTB/UTPA

The research hypothesis was that atrazine-degrading bacteria would be detectable during the planting and rainy seasons with their populations dissipating during non-planting and dry seasons in 2010-2011. Atrazine concentration was detected in March, May, June and August for all canals with June having the highest average concentration of 0.77ppb. Gene atzA abundance was detected from June through August with July samples having the highest gene abundance of 250.6 (pg). Tolerant bacterial densities were detectable from March through June. Atrazine concentration and population abundance were not statistically different during planting and non-planting, rainy and dry seasons, although there was a trend …

Does Sabp2 Exist As A Dimer?, Mir Ashad Hossain

Electronic Theses and Dissertations

Salicylic acid binding protein 2 (SABP2) is one of the key enzymes in salicylic acid-dependent plant defense pathway. SABP2 is a 29 kDa protein present in extremely low abundance in plants and it catalyzes the conversion of signaling molecule methyl salicylate into salicylic acid. Although it has been shown that 6x His-tagged SABP2 over expressed in E. coli is a homodimer, its exact conformation in planta is still unknown. Therefore, we proposed to determine if SABP2 exist as a dimer and/or monomer under natural condition. To verify the exact conformation of native SABP2 protein in plant, SABP2 was purified from …

Downregulation Of Pax2 Suppresses Ovarian Cancer Cell Growth, Huijuan Song

Dissertations and Theses (Open Access)

PAX2 is one of nine PAX genes regulating tissue development and cellular differentiation in embryos. PAX2 promotes cell proliferation, oncogenic transformation, cell-lineage specification, migration, and survival. Unattenuated PAX2 has been found in several cancer types. We therefore sought to elucidate the role of PAX2 in ovarian carcinomas. We found that PAX2 was expressed in low-grade serous, clear cell, endometrioid and mucinous cell ovarian carcinomas, which are relatively chemoresistant compared to high grade serous ovarian carcinomas. Four ovarian cancer cell lines, RMUGL (mucinous), TOV21G (clear cell), MDAH-2774 (endometrioid) and IGROV1 (endometrioid), which express high-levels of PAX2, were used to study the …

Upregulation Of Reactive Oxygen Species During The Retrovirus Life Cycle And Their Roles In A Mutant Of Moloney Murine Leukemia Virus, Ts1-Mediated Neurodegeneration, Soo Jin Kim

Dissertations and Theses (Open Access)

Viral invasion of the central nervous system (CNS) and development of neurological symptoms is a characteristic of many retroviruses. The mechanism by which retrovirus infection causes neurological dysfunction has yet to be fully elucidated. Given the complexity of the retrovirus-mediated neuropathogenesis, studies using small animal models are extremely valuable. Our laboratory has used a mutant moloney murine leukemia retrovirus, ts1-mediated neurodegneration. We hypothesize that astrocytes play an important role in ts1-induced neurodegeneration since they are retroviral reservoirs and supporting cells for neurons. It has been shown that ts1 is able to infect astrocytes in vivo and in …

Lipid Metabolism In Trypanosoma Brucei: Molecular Characterization Of Fatty Acid Synthesis And Uptake, Patrick Vigueira

All Dissertations

My doctoral studies focused on the fatty acid metabolism of the deadly protozoan parasite, Trypanosoma brucei. Fatty acid metabolism in T. brucei can be broadly divided into two pathways, synthesis and uptake. In Chapters 2-4 I describe experiments investigating the parasite's fatty acid synthesis pathway. Chapter 2 contains the initial characterization of acetyl-CoA carboxylase (ACC) in T. brucei. Knockdown of TbACC by RNA interference (RNAi) reduced parasite virulence in a mouse model, suggesting that TbACC has the potential to be utilized as a drug target. Chapters 3 and 4 explore the effects of two known ACC inhibitors, the …

Role Of Porcine Reproductive And Respiratory Syndrome Virus Non-Structural Protein 1 In Viral Replications And Pathogenesis, Lalit Kumar Beura

School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research

Porcine reproductive and respiratory syndrome virus (PRRSV) is an infectious agent of significant concern to the global swine industry. PRRSV infection of pigs is initiated by a long viremia after which the virus enters in an extended persistent phase of 3-4 months that ultimately is resolved by the immune system. The delayed and weak host adaptive response is responsible for the protracted convalescence period. An initial sub-optimal innate immune response is postulated to be the reason behind such meager adaptive immune response. A major focus of the studies undertaken in this dissertation was to identify the viral non-structural proteins (nsps) …

Heterogeneity, Control, Social Infrastructure, And Possibilities Of Participation: Their Interplay In Modern Understandings Of Heredity And In Interpretation Of Science, Peter J. Taylor

Working Papers on Science in a Changing World

This working paper is a prospectus for research, writing, and engagement. It consists of vignettes, sketches of lines of inquiry, and proposals for engagement, all of which concern modern understandings of heredity and development over the life course as well as the social interpretation of science. The various items address a range of areas of science and of its interpretation: heritability studies, the social uses of genetic information, gene-by-environment interaction, personalized medicine, IQ paradoxes, racial group membership, biobanks, and life events and difficulties research. Fresh perspectives in these areas are opened up by examining the ways that research and application …

Morphology, Material And Vibratory Properties Of The Swimbladder In The Carp, Cyprinus Carpio, Yasha Mohajer

Theses and Dissertations

The carp Cyprinus carpio has a two-chambered swimbladder and excellent hearing. I explored the hypothesis that the anterior chamber, which connects to Weberian ossicles, is adapted for hearing by testing both chambers for material properties. I also determined displacement and auditory responses to mechanical strikes. Wall stress is higher in the posterior, strain in the anterior and modulus lower in the anterior chamber. Strikes increase pressure followed by a variable rebound that rapidly decays. Displacement and sound amplitude increase with hammer force, and amplitude is similar in both chambers for within chamber strikes but lower across chambers. Normalized for equivalent …

Na/K-Atpase Mimetic Pnaktide Peptide Inhibits The Growth Of Human Cancer Cells, Zhichuan Li, Zhongbing Zhang, Joe X. Xie, Xin Li, Jiang Tian, Ting Cai, Hongaun Cui, Hanfei Ding, Joseph I. Shapiro Md, Zijian Xie

Biochemistry and Microbiology

Cells contain a large pool of non-pumping Na/K-ATPase that participates in signal transduction. Here, we show that the expression of α1 Na/K-ATPase is significantly reduced in human prostate carcinoma as well as in several human cancer cell lines. This down-regulation impairs the ability of Na/K-ATPase to regulate Src-related signaling processes. Supplement of pNaKtide, a peptide derived from α1 Na/K-ATPase, reduces activities of Src and Src effectors. Consequently, these treatments stimulate apoptosis and inhibit growth in cultures of human cancer cells. Moreover, administration of pNaKtide inhibits angiogenesis and growth of tumor xenograft. Thus, the new findings demonstrate the in vivo effectiveness …

Alterations In The Transciptome And Antibiotic Susceptibility Of Staphylococcus Aureus Grown In The Presence Of Diclofenac, James T. Riordan, Joanne M. Dupre, Stephanie A. Cantore-Matyi, Atul Kumar-Singh, Yang Song, Shahrear Zaman, Sonia Horan, Nada S. Helal, Vijayaraj Nagarajan, Mohamed O. Elasri, Brian J. Wilkinson, John E. Gustafson

Faculty Publications

Background

Diclofenac is a non-steroidal anti-inflammatory drug (NSAID) which has been shown to increase the susceptibility of various bacteria to antimicrobials and demonstrated to have broad antimicrobial activity. This study describes transcriptome alterations in S. aureus strain COL grown with diclofenac and characterizes the effects of this NSAID on antibiotic susceptibility in laboratory, clinical and diclofenac reduced-susceptibility (Dc^RS) S. aureus strains.

Methods

Transcriptional alterations in response to growth with diclofenac were measured using S. aureus gene expression microarrays and quantitative real-time PCR. Antimicrobial susceptibility was determined by agar diffusion MICs and gradient plate analysis. Ciprofloxacin accumulation was measured …

Survival, Breeding Frequency, And Migratory Orientation In The Jefferson Salamander, Ambystoma Jeffersonianum, Stephen P. De Lisle, Kristine L. Grayson

Biology Faculty Publications

Accurate estimates of demographic parameters, such as survival and breeding frequency, are necessary for the conservation and management of animal populations. Additionally, life-history data are required for gaining an empirical understanding of the ecology of natural populations. We monitored a population of Jefferson Salamanders (Ambystoma jeffersonianum) breeding in a permanent mountain-top pond at the southern limit of this species’ geographic range in Virginia over four years. We used closed multistate mark-recapture models with Pollock's robust design to estimate the demographic parameters of this population. Additionally, we used point-of-capture data to compare the orientation of migrations into and out …

Investigation Of Pre- And Post-Zygotic Reproductive Barriers Between Two Host-Plant Complex Races Of The Parasitic Wasp Cotesia Congregata (Say) [Hymenoptera: Braconidae], Justin Bredlau

Theses and Dissertations

Investigations of host-associated differentiation of parasitoids have largely focused on the degree of molecular genetic differentiation, but a true test of species status must examine the mating patterns of differentiated populations to determine if they can interbreed in the wild and produce viable offspring. We examined possible mechanisms of isolation between two genetically distinct host-plant complex races of the braconid, Cotesia congregata, originating from hosts on tobacco and catalpa. We compared male responses to female pheromones, elements of male acoustic courtship signals, and breeding success between the two races. Males responded to pheromones from both sources and male courtship signals …

Caenorhabditis Briggsae Recombinant Inbred Line Genotypes Reveal Inter-Strain Incompatibility And The Evolution Of Recombination, Joseph A. Ross, Daniel C. Koboldt, Julia E. Staisch, Helen M. Chamberlin, Bhagwati P. Gupta, Raymond D. Miller, Scott Everet Baird, Eric S. Haag

Biological Sciences Faculty Publications

The nematode Caenorhabditis briggsae is an emerging model organism that allows evolutionary comparisons with C. elegans and exploration of its own unique biological attributes. To produce a high-resolution C. briggsae recombination map, recombinant inbred lines were generated from reciprocal crosses between two strains and genotyped at over 1,000 loci. A second set of recombinant inbred lines involving a third strain was also genotyped at lower resolution. The resulting recombination maps exhibit discrete domains of high and low recombination, as in C. elegans, indicating these are a general feature of Caenorhabditis species. The proportion of a chromosome's physical size occupied by …

Cellular Expression Of Smarca4 (Brg1)-Regulated Genes In Zebrafish Retinas, Monica R. Hensley, Farida Emran, Sylvia Bonilla, Liyun Zhang, Wenxuan Zhong, Paul Grosu, John E. Dowling, Yuk Fai Leung

Department of Biological Sciences Faculty Publications

Background

In a recent genomic study, Leung et al. used a factorial microarray analysis to identify Smarca4 (Brg1)-regulated genes in micro-dissected zebrafish retinas. Two hundred and fifty nine genes were grouped in three-way ANOVA models which carried the most specific retinal change. To validate the microarray results and to elucidate cellular expression patterns of the significant genes for further characterization, 32 known genes were randomly selected from this group. In situ hybridization of these genes was performed on the same types of samples (wild-type (WT) and smarca4^a50/a50 (yng) mutant) at the same stages (36 and 52 hours …

Diversity, Loss, And Gain Of Malaria Parasites In A Globally Invasive Bird, Alfonso Marzal, Robert Ricklefs, Gediminas Valkiunas, Tamer Albayrak, Elena Arriero, Camille Bonneaud, Gábor Czirják, John Ewen, Olof Hellgren, Dita Hořáková, Tatjana Iezhova, Henrik Jensen, Asta Križanauskienė, Marcos Lima, Florentino De Lope, Eyðfinn Magnussen, Lynn Martin, Anders Møller, Vaidas Palinauskas, Péter Pap, Javier Pérez-Tris, Ravinder Sehgal, Manuel Soler, Eszter Szöllősi, Helena Westerdahl, Pavel Zetindjiev, Staffan Bensch

Biology Department Faculty Works

Invasive species can displace natives, and thus identifying the traits that make aliens successful is crucial for predicting and preventing biodiversity loss. Pathogens may play an important role in the invasive process, facilitating colonization of their hosts in new continents and islands. According to the Novel Weapon Hypothesis, colonizers may out-compete local native species by bringing with them novel pathogens to which native species are not adapted. In contrast, the Enemy Release Hypothesis suggests that flourishing colonizers are successful because they have left their pathogens behind. To assess the role of avian malaria and related haemosporidian parasites in the global …

An Invasive Species Reduces Aquatic Insect Flux To Terrestrial Food Webs, Steven S. Merkley

Theses and Dissertations

Although it is well documented how introduced species can negatively affect native species, we only poorly understand how they may alter ecosystem functions. We investigated how an invasive fish affected the flux of aquatic insects to terrestrial food webs using mesocosms in a desert spring ecosystem. We compared aquatic insect emergence between alternative community states with monocultures and polycultures of two native species of fish, least chub (Iotichthys phlegethontis) and Utah chub (Gila atraria) plus, introduced western mosquitofish (Gambusia affinis). We tested three hypotheses: (1) aquatic insect biomass will be greater than terrestrial insect …

Changes In Life History Within An Individual's Lifetime, Eric J. Billman

Theses and Dissertations

A central goal of life history theory is to understand the selective factors that generate the diversity of reproductive patterns observed in nature. Within lifetime changes in reproductive investment will determine an organism's fitness; however, this area of life history theory has received less attention than comparisons among population that characterize life history traits as a single population mean. Reproductive allocation can be affected by multiple cues; the integration of these cues across an organism's lifetime generates the diversity in life history strategies observed in nature. Life history studies should examine the interacting effects of multiple cues on life history …

Exome-Wide Dna Capture And Next Generation Sequencing In Domestic And Wild Species, Albano Beja-Pereira, Shanyuan Chen, Theodore F. Cosart, Gordon Luikart, Sarah B. Ng, Jay Shendure

Biological Sciences Faculty Publications

Our understanding of the molecular, genetic basis of adaptations and phenotypic differentiation among individuals will advance quickly thanks to new molecular techniques. This understanding is crucial given that accelerating environmental change and human population growth are increasingly threatening natural populations of fish and wildlife as well as increasing demands for agricultural production in domesticated species. This makes it urgent in many wild and domestic species to investigate the genetic basis of fitness, adaptation, and disease resistance [1], and to discover adaptive genes and speciation genes, i.e., the "loci of evolution" [2].