Digital Commons Network^™

Phosphorylation Studies Of Serine 663 On Human 5-Lipoxygenase, Pamela Arden Doerner

Honors Capstones

No abstract provided.

Dispersal Behavior Correlates With Personality Of A North American Fish, Josh E. Rasmussen, Mark C. Belk

Faculty Publications

The process of dispersal is determined by the interaction of individual (intrinsic) traits and environmental (extrinsic) factors. Although many studies address and quantify dispersal, few evaluate both intrinsic and extrinsic factors jointly. We test the relative importance of intrinsic traits (exploration tendency and size) and extrinsic factors (population density and habitat quality) on dispersal of a medium-sized western United States minnow, southern leatherside chub Lepidomeda aliciae. A generalized linear model with a binomial response was used to determine the probability of individuals dispersing one year after tagging. Medium-sized individuals that were more prone to explore novel environments were 10.7 …

Neurodegeneration - A Means To An End, Amit Singh

Biology Faculty Publications

Cell death, a global phenomenon found throughout the animal kingdom, is a mechanism to maintain tissue homeostasis and for adaptation to changes in the environment [1,2]. Millions of cells die in our body daily- they succumb to stress and commit suicide by a mechanism referred to as cell death or apoptosis [2-4]. Under normal conditions cells are continuously replaced by new cells from the stemor progenitor- cells. For example, an optimum balance in shedding of dead cells from the skin and their replenishment by new ones maintain our health and hygiene. In this context, apoptosis is a mechanism to eliminate …

Exploring The Role Of Sonic Hedgehog In The Lymph Heart Development Of Xenopus Laevis, Laura Barry

Honors Theses

Xenopus as a Model Organism in Evolutionary Developmental Biology

Xenopus laevis, the African clawed frog, is an important model organism in the field of evolutionary developmental biology research. These tongue-less aquatic frogs are basally branching anuran amphibians that display marked sexual dimorphism and have webbed hind feet that sport several small, sharp claws. This species is a useful model organism despite its long generation time and genomic complexity, for historical and practical reasons. The animal adapts well to housing in a laboratory setting, and its reproduction can be …

Treatment Of Aortic Heart Valve Conduit With Glutamine And Heat Shock As A Means To Deter The Constituent Cellular Population From Becoming Apoptotic, Alyce Marie Linthurst Jones

Theses and Dissertations in Biomedical Sciences

Cryopreserved allograft heart valves represent the best solution for a patient with a failing heart valve. However, the constituent cells become apoptotic and within months of transplant the heart valve becomes acellular and the recipient's cells do not repopulate the allograft (3, 51). A strategy to prevent this situation would be to minimize or prevent apoptosis from occurring by strategically altering steps during heart valve processing. Recently it has been demonstrated that: 1) Heat shock protein 70 is a negative modulator of the apoptotic cascade; 2) Cells in culture exposed to hypothermic conditions produce heat shock protein 70 upon rewarming; …

Human-Wildlife Interaction In Serengeti And Ngorongoro Districts Of Tanzania: A Case Study On Small Mammals, Fj Magige

Tanzania Journal of Science

In the Serengeti and Ngorongoro Districts, small mammals are said to provide protein and income to the local people. However, they are simultaneously reported to conflict with farming activities. These conflicting aspects have not been investigated there. The present article considers humansmall mammal interactions in six villages adjacent to the protected areas. Data were obtained through questionnaire administration to the local people in the districts. Small mammals were hunted in the two districts for food purposes and some villagers declared that they were earning income from selling small mammals products. Seventy percent of the respondents in Serengeti District claimed that …

A Drosophila Deg/Enac Subunit Functions Specifically In Gustatory Neurons Required For Male Courtship Behavior, E. Starostina, T. Liu, V. Vijayan, Zheng Zheng , '11, Kathleen King Siwicki, C. W. Pikielny

Biology Faculty Works

Detection of specific female pheromones stimulates courtship behavior in Drosophila melanogaster males, but the chemosensory molecules, cells, and mechanisms involved remain poorly understood. Here we show that ppk25, a DEG/ENaC ion channel subunit required for normal male response to females, is expressed at highest levels in a single sexually dimorphic gustatory neuron of most taste hairs on legs and wings, but not in neurons that detect courtship-inhibiting pheromones or food. Synaptic inactivation of ppk25-expressing neurons, or knockdown of ppk25 expression in all gustatory neurons, significantly impairs male response to females, whereas gustatory expression of ppk25 rescues the courtship behavior of …

Plant Species Richness And Species Area Relationships In A Florida Sandhill, Monica Ruth Downer

USF Tampa Graduate Theses and Dissertations

Pine sandhill are integral pyrogenic communities in the southeastern United States. Though once widespread, habitat destruction, fire suppression and fragmentation have reduced the population to nearly 3%. It is important to learn as much as possible about these unique areas in order to implement best management practices to conserve and restore the existing populations of these communities.

Fire is central to the maintenance of pine sandhill communities and two conceptual hypothesis regarding burn frequency have come to light in maintaining the unique species composition and richness of these areas. The first is the Intermediate Disturbance Hypothesis which suggests that intermediate …

An Alu-Based Phylogeny Of Gibbons (Hylobatidae), James Michael Oldenburg

Honors Capstones

No abstract provided.

Assessing The Link Between Coastal Development And The Quality Of Fish Habitat In Mangrove Tidal Tributaries, Justin Micheal Krebs

USF Tampa Graduate Theses and Dissertations

To assess the potential influence of coastal development on the quality of estuarine habitat for nekton, we characterized land use and the intensity of land development surrounding small tidal tributaries of Tampa Bay. Based on this characterization, we classified tributaries as undeveloped, industrial, urban or man-made (i.e., mosquito-control ditches). Over one-third (37%) of tributaries were determined to be heavily developed, while fewer than one-third (28%) remain relatively undeveloped. We then examined the nekton community from eleven tributaries in watersheds representing the defined land-use classes. Whereas mean nekton density and species richness were both independent of land use, nekton-community structure differed …

Integration Of Subthreshold And Suprathreshold Excitatory Barrages Along The Somatodendritic Axis Of Pyramidal Neurons, Hysell V. Oviedo, Alex D. Reyes

Publications and Research

Neurons integrate inputs arriving in different cellular compartments to produce action potentials that are transmitted to other neurons. Because of the voltage- and time-dependent conductances in the dendrites and soma, summation of synaptic inputs is complex. To examine summation of membrane potentials and firing rates, we performed whole-cell recordings from layer 5 cortical pyramidal neurons in acute slices of the rat’s somatosensory cortex. We delivered subthreshold and suprathreshold stimuli at the soma and several sites on the apical dendrite, and injected inputs that mimic synaptic barrages at individual or distributed sites. We found that summation of subthreshold potentials differed from …

Crosstalk Between Phospholipase D And Sphingosine Kinase In Plant Stress Signaling, Xuemin Wang, Liang Guo

Biology Department Faculty Works

The activation of phospholipase D (PLD) produces phosphatidic acid (PA), whereas plant sphingosine kinase (SPHK) phosphorylates long-chain bases to generate long-chain base-1-phosphates such as phytosphingosine-1-phosphate (phyto-S1P). PA and phyto-S1P have been identified as lipid messengers. Recent studies have shown that PA interacts directly with SPHKs in Arabidopsis, and that the interaction promotes SPHK activity. However, SPHK and phyto-S1P act upstream of PLDα1 and PA in the stomatal response to abscisic acid (ABA). These findings indicate that SPHK/phyto-S1P and PLD/PA are co-dependent in the amplification of lipid messengers, and that crosstalk between the sphingolipid- and phospholipid-mediated signaling pathways may play important …

Effects Of Predation Environment And Food Availability On Somatic Growth In The Livebearing Fish Brachyrhaphis Rhabdophora (Pisces: Poeciliidae), Brittany Herrod Gale

Theses and Dissertations

Variation in somatic growth rates has interested biologists for decades because of the relationship between growth and other fitness-determining traits (i.e. fecundity, survival, and body size), and the corresponding effect of somatic growth on production of organisms humans use for food. The interaction between genetic variation in growth rates and environmentally induced variation in growth rates shows the pattern of growth across multiple environments (i.e. the reaction norm) that clarifies the history and potential future of evolutionary change in growth rates among populations. Theoretical predictions suggest variation in predator-induced mortality rates can influence mean growth rates and the shape of …

Accurate Spectral Measurements And Color Infrared Imagery Of Excised Leaves Exhibiting Gaussian Curvature From Healthy And Stressed Plants, Christopher R. Little, Kenneth R. Summy

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

No abstract provided.

Connections Between Sphingosine Kinase And Phospholipase D In The Abscisic Acid Signaling Pathway In Arabidopsis, Xuemin Wang, Liang Guo, Girish Mishra, Jennifer E. Markham, Maoyin Li, Amanda Tawfall, Ruth Welti

Biology Department Faculty Works

Phosphatidic acid (PA) and phytosphingosine 1-phosphate (phyto-S1P) both are lipid messengers involved in plant response to abscisic acid (ABA). Our previous data indicate that PA binds to sphingosine kinase (SPHK) and increases its phyto-S1P-producing activity. To understand the cellular and physiological functions of the PA-SPHK interaction, we isolated Arabidopsis thaliana SPHK mutants sphk1-1 and sphk2-1 and characterized them, together with phospholipase Dα1 knock-out, pldα1, in plant response to ABA. Compared with wild-type (WT) plants, the SPHK mutants and pldα1 all displayed decreased sensitivity to ABA-promoted stomatal closure. Phyto-S1P promoted stomatal closure in sphk1-1 and sphk2-1, but not in pldα1, whereas …

Targeted Disruption Of Toxoplasma Gondii Serine Protease Inhibitor 1 Increases Bradyzoite Cyst Formation In Vitro And Parasite Tissue Burden In Mice, Viviana Pszenny, Paul H. Davis, Xing W. Zhou, Christopher A. Hunter, Vern B. Carruthers, David S. Roos

Biology Faculty Publications

As an intracellular protozoan parasite, Toxoplasma gondii is likely to exploit proteases for host cell invasion, acquisition of nutrients, avoidance of host protective responses, escape from the parasitophorous vacuole, differentiation, and other activities. T. gondii serine protease inhibitor 1 (TgPI1) is the most abundantly expressed protease inhibitor in parasite tachyzoites. We show here that alternative splicing produces two TgPI1 isoforms, both of which are secreted via dense granules into the parasitophorous vacuole shortly after invasion, become progressively more abundant over the course of the infectious cycle, and can be detected in the infected host cell cytoplasm. To …

Ear Length As A Diagnostic Character For Identifying Species Of Kangaroo Rats, Daniel W. Ziebron

Biological Sciences

The following study examines the use of ear length as a diagnostic field character for differentiating between species of Kangaroo rats in San Luis Obispo County. Data was taken from a study of Kangaroo rats in the Guadalupe-Nipomo Dunes National Wildlife Refuge, as well as various collections under the supervision of Francis X. Villablanca, Ph. D. and California Polytechnic State University, San Luis Obispo. An ANOVA was used to compare subspecies within Dipodomys heermanni and t-tests were used to compare ear lengths between Dipodomys heermanni and Dipodomys venustus. The analysis shows a statistically significant difference and supports the hypothesis …

Science & The Senses: Perceptions & Deceptions, William D. Stansfield

Biological Sciences

Science requires the acquisition and analysis of empirical (sense-derived) data. Given the same physical objects or phenomena, the sense organs of all people do not respond equally to these stimuli, nor do their minds interpret sensory signals identically. Therefore, teachers should develop lectures on human sensory systems that include some common examples of sensory limitations, variations, deficiencies, malfunctions, and diseases (as discussed herein) because they have important implications for conducting scientific investigations, science education, and introspection that are seldom included in biology textbooks. Students need to be made aware of the human tendency to self deception in order to avoid …

Potential For Barn Owl As Rodent Biological Control In Central California Vineyards, Hannah Tillmann

Biological Sciences

The pocket gopher (Thomomys bottae) and voles (Microtus spp.) cause significant economic damage to vineyards. In response, many growers have taken steps to attract Barn Owls (Tyto alba) to their properties to help keep these rodent populations in check. This research project investigated Barn Owl consumption of pocket gophers and voles in Central California vineyards in order to assess the efficiency of this integrated pest management strategy. I collected a total of 715 owl pellets from five vineyard locations in Templeton and Paso Robles, California over an eight-month period during nesting and post-fledging seasons. I …

Fishing Top Predators Indirectly Affects Condition And Reproduction In A Reef-Fish Community, S.M. Walsh, S.L. Hamilton, Bi. Ruttenberg, M.K. Donovan, S.A. Sandin

Biological Sciences

To examine the indirect effects of fishing on energy allocation in non-target prey species, condition and reproductive potential were measured for five representative species (two-spot red snapper Lutjanus bohar, arc-eye hawkfish Paracirrhites arcatus, blackbar devil Plectroglyphidodon dickii, bicolour chromis Chromis margaritifer and whitecheek surgeonfish Acanthurus nigricans) from three reef-fish communities with different levels of fishing and predator abundance in the northern Line Islands, central Pacific Ocean. Predator abundance differed by five to seven-fold among islands, and despite no clear differences in prey abundance, differences in prey condition and reproductive potential among islands were found. Body condition …

Postdispersal Seed Predation Limits The Abundance Of A Long-Lived Perennial Forb (Lithospermum Ruderale), Mary Carolyn Bricker, John L. Maron

Biological Sciences Faculty Publications

Loss of seeds to consumers is common in plant communities, but the degree to which these losses influence plant abundance or population growth is often unclear. This is particularly the case for postdispersal seed predation by rodents, as most studies of rodent seed predation have focused on the sources of spatiotemporal variation in seed loss but not quantified the population consequences of this loss. In previous work we showed that seed predation by deer mice (Peromyscus maniculatus) substantially reduced seedling recruitment and establishment of Lithospermum ruderale (Boraginaceae), a long-lived perennial forb. To shed light on how rodent seed …

Proteins: Form And Function, Roy D. Sleator

Department of Biological Sciences Publications

An overwhelming array of structural variants has evolved from a comparatively small number of protein structural domains; which has in turn facilitated an expanse of functional derivatives. Herein, I review the primary mechanisms which have contributed to the vastness of our existing, and expanding, protein repertoires. Protein function prediction strategies, both sequence and structure based, are also discussed and their associated strengths and weaknesses assessed.

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Research, Monitoring, Assessment And Development Plan 2011 – 2012, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

The Bird Of Time: Cognition And The Avian Biological Clock, Vincent M. Cassone, David F. Westneat

Biology Faculty Publications

Avian behavior and physiology are embedded in time at many levels of biological organization. Biological clock function in birds is critical for sleep/wake cycles, but may also regulate the acquisition of place memory, learning of song from tutors, social integration, and time-compensated navigation. This relationship has two major implications. First, mechanisms of the circadian clock should be linked in some way to the mechanisms of all these behaviors. How is not yet clear, and evidence that the central clock has effects is piecemeal. Second, selection acting on characters that are linked to the circadian clock should influence aspects of the …

Vincristine And Bortezomib Cause Axon Outgrowth And Behavioral Defects In Larval Zebrafish, Tahsin M. Khan, Nathan Benaich, Clare F. Malone, Rebecca L. Bernardos, Amy R. Russell, Gerald B. Downes, Michael J. Barresi, Lara D. Hutson

Biological Sciences: Faculty Publications

Peripheral neuropathy is a common side effect of a number of pharmaceutical compounds, including several chemotherapy drugs. Among these are vincristine sulfate, a mitotic inhibitor used to treat a variety of leukemias, lymphomas, and other cancers, and bortezomib, a 26S proteasome inhibitor used primarily to treat relapsed multiple myeloma and mantle cell lymphoma. To gain insight into the mechanisms by which these compounds act, we tested their effects in zebrafish. Vincristine or bortezomib given during late embryonic development caused significant defects at both behavioral and cellular levels. Intriguingly, the effects of the two drugs appear to be distinct. Vincristine causes …

Phylogeny And Cryptic Diversity In Geckos (Phyllopezus; Phyllodactylidae; Gekkota) From South America’S Open Biomes, Tony Gamble, Guarino R. Colli, Miguel T. Rodrigues, Fernanda P. Werneck, Andrew M. Simons

Biological Sciences Faculty Research and Publications

The gecko genus Phyllopezus occurs across South America’s open biomes: Cerrado, Seasonally Dry Tropical Forests (SDTF, including Caatinga), and Chaco. We generated a multi-gene dataset and estimated phylogenetic relationships among described Phyllopezus taxa and related species. We included exemplars from both described Phyllopezus pollicaris subspecies, P. p. pollicaris and P. p. przewalskii. Phylogenies from the concatenated data as well as species trees constructed from individual gene trees were largely congruent. All phylogeny reconstruction methods showed Bogertia lutzae as the sister species of Phyllopezus maranjonensis, rendering Phyllopezus paraphyletic. We synonymized the monotypic genus Bogertia with Phyllopezus to maintain a …

Implication Of The Mir-184 And Mir-204 Competitive Rna Network In Control Of Mouse Secondary Cataract, Andrea Hoffmann, Yusen Huang, Rinako Suetsugu-Maki, Carol S. Ringelberg, Craig R. Tomlinson, Katia Del Rio-Tsonis, Panagiotis A. Tsonis

Biology Faculty Publications

The high recurrence rate of secondary cataract (SC) is caused by the intrinsic differentiation activity of residual lens epithelial cells after extra-capsular lens removal. The objective of this study was to identify changes in the microRNA (miRNA) expression profile during mouse SC formation and to selectively manipulate miRNA expression for potential therapeutic intervention. To model SC, mouse cataract surgery was performed and temporal changes in the miRNA expression pattern were determined by microarray analysis. To study the potential SC counterregulative effect of miRNAs, a lens capsular bag in vitro model was used. Within the first 3 wks after cataract surgery, …

A Streamlined Strategy For Biohydrogen Production With Halanaerobium Hydrogeniformans, An Alkaliphilic Bacterium, Matthew B. Begemann, Melanie R. Mormile, Oliver C. Sitton, Judy D. Wall, Dwayne A. Elias

Biological Sciences Faculty Research & Creative Works

Biofuels are anticipated to enable a shift from fossil fuels for renewable transportation and manufacturing fuels, with biohydrogen considered attractive since it could offer the largest reduction of global carbon budgets. Currently, lignocellulosic biohydrogen production remains inefficient with pretreatments that are heavily fossil fuel-dependent. However, bacteria using alkali-treated biomass could streamline biofuel production while reducing costs and fossil fuel needs. An alkaliphilic bacterium, Halanaerobium hydrogeniformans, is described that is capable of biohydrogen production at levels rivaling neutrophilic strains, but at pH 11 and hypersaline conditions. H. hydrogeniformans ferments a variety of 5-and 6-carbon sugars derived from hemicellulose and cellulose …

Insights Into Migration And Development Of Coral Black Band Disease Based On Fine Structure Analysis, Aaron Miller, Patricia Blackwelder, Husain Al-Sayegh, Laurie L. Richardson

Biology Faculty Articles

In many diverse ecosystems, ranging from natural surfaces in aquatic ecosystems to the mammalian gut and medical implants, bacterial populations and communities exist as biofilms. While the process of biofilm development has been well-studied for those produced by unicellular bacteria such Pseudomonas aeruginosa, little is known about biofilm development associated with filamentous microorganisms. Black band disease (BBD) of corals is characterized as a polymicrobial biofilm (mat) community, visually-dominated by filamentous cyanobacteria. The mat migrates across a living coral host, completely lysing coral tissue and leaving behind exposed coral skeleton. It is the only known cyanobacterial biofilm that migrates across …