Digital Commons Network^™

Aggressive Acoustic Behavior In Yasuhikotakia Modesta: Does The Lombard Effect Hold Water?, Bethany Coffey

Mahurin Honors College Capstone Experience/Thesis Projects

The Lombard effect is the automatic and involuntary change in the intensity of vocalizations in the presence of background noise in order to maintain a constant signal to noise ratio. While this phenomenon is commonly found in vocalizing terrestrial vertebrates, it had not previously been examined in aquatic vertebrates such as fishes. This experiment tests the presence of the Lombard effect in the red-finned loach, Yasuhikotakia modesta, which make two types of sounds: butting and clicking. I recorded three pairs of Y. modesta during aggressive interactions over territory and compared the sounds produced in silence with sounds produced …

Semipermeable Membranes, Diffusion, And Osmosis Inquiry: Effective Modeling In A High School Classroom, Amar Patel

Mahurin Honors College Capstone Experience/Thesis Projects

A novel approach is taken in teaching the core chemical and biological concepts of mass transport properties, specifically diffusion and osmosis, in an investigation-rich unit of instruction spanning fifteen days. The unit is based on the highly successful 5-E, inquiry based approach known as project-based instruction which emphasizes the use of laboratories and interactive discussions. The entire unit will center on a grand challenge which the students will provide a media-based solution for by encompassing the concepts taught in the unit. When introducing these topics in the high school classroom, the instructor must be able to help students understand the …

Identifying Context-Specific Gene Profiles Of Social, Reproductive And Mate Preference Behavior In A Fish Species With Female Mate Choice, Mary E. Ramsey, Tara L. Maginnis, Ryan Y. Wong, Chad Brock, Molly E. Cummings

Biology Faculty Publications

Sensory and social inputs interact with underlying gene suites to coordinate social behavior. Here we use a naturally complex system in sexual selection studies, the swordtail, to explore how genes associated with mate preference, receptivity, and social affiliation interact in the female brain under specific social conditions. We focused on 11genes associated with mate preference in this species (neuroserpin, neuroligin-3, NMDA receptor, tPA, stathmin-2, β-1 adrenergic receptor) or with female sociosexual behaviors in other taxa (vasotocin, isotocin, brain aromatase,α-1 adrenergic receptor, tyrosinehydroxylase). We exposed females to four social conditions, including pairings of differing mate choice complexity (large males, large/ small …

Roles For Chd7 In Zebrafish Development With Implications For Human Disease, Nicole Lynn Mcdaniels

Biology - Dissertations

The Chromodomain Helicase DNA Binding Protein (CHD) family consists of a group of nine known proteins that function in controlling DNA dynamics and transcription. The CHD family member of interest in this work, Chromodomain helicase DNA-binding protein 7 (chd7), has been implicated in human CHARGE (coloboma of the eye, heart defects, atresia of the choanae, retardation of growth and/or development, genital and/or urinary abnormalities, and ear abnormalities and deafness) Syndrome and Idiopathic Scoliosis, however little is known about the roles this gene plays during development.

Using zebrafish as a model system, morpholino antisense technology, whole mount in situ hybridization …

Clark's Nutcracker Seed Harvest Patterns In Glacier National Park And A Novel Method For Monitoring Whitebark Pine Cones, Monika E. Maier

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Clark's Nutcracker (Nucifraga columbiana) is the primary seed disperser of whitebark pine (Pinus albicaulis), which is in decline throughout its range. There is concern that a decline in whitebark pine will lead to a subsequent decline in local populations of Clark's Nutcracker. Because natural regeneration depends on the presence of Clark's Nutcracker, the process of harvesting whitebark pine seeds needs to be fully understood. In addition, resource managers need a cost-effective method for monitoring nutcracker occurrence in whitebark pine stands during the seed harvest season. I visited eleven study sites in Glacier National Park, Montana, where …

The Effect Of Chlorine And Ozone In Controlling Microbes On Organically Grown Cilantro And Carrots, Adam Holtz

BioResource and Agricultural Engineering

This senior project investigates the relative efficacy of ozonated water and chlorinated water for the purpose of sanitizing freshly-harvested organic produce. The aim of this study was to assist the Cal Poly Organic Farm in deciding whether or not to invest in an ozone generator. The crops used for testing were grown organically in the same field. Carrots and cilantro were harvested and promptly treated with 5 ppm ozone solution or 25 ppm sodium hypochlorite solution. Carrots were sampled at 0, 7, and 14 days storage to determine microbial populations. Cilantro was similarly tested at 0, 6, and 12 days …

Influence Of Habitat Heterogeneity On Small Mammals In The Central Platte River Valley, Nebraska, Justin D. Anderson

Master's Theses or Doctor of Nursing Practice

Although the loss of prairie is substantial across the extent of its historic range, large portions of native rangeland still remain throughout Nebraska. It is critical that resource managers and private landowners manage rangelands in a manner that will enhance ecosystem integrity by using techniques that provide disturbance regimes. Heterogeneity based management, such as patch-burn grazing and rest-rotation grazing, can be used as a conservation tool to increase biodiversity within management units and at a landscape level. Heterogeneity-based management has received much attention in the literature within the past decade, but there has been little focus on how these management …

Exploring The Regulation Of Neuronal Nitric Oxide Synthase In Retinal Amacrine Cells, Glynis B. Mattheisen

Honors Capstones

No abstract provided.

Ecology Of The Eastern Hognose Snake (Heterodon Platirhinos) At Cape Cod National Seashore, Barnstable County, Massachusetts, Scott W. Buchanan

Theses, Dissertations and Culminating Projects

The eastern hognose snake (Heterodon platirhinos) is an understudied species of increasing conservation concern, especially in the northeastern portion of its range. Conservation and management efforts often rely on ecological information to guide best practices when dealing with vulnerable and/or cryptic species. A radiotelemetry study was initiated at Cape Cod National Seashore, Barnstable County, Massachusetts on H. platirhinos in an effort to increase the understanding of spatial ecology, habitat selection, and associated natural history attributes. Sixteen adult H. platirhinos were tracked over two years yielding a total of 413 relocations. We observed a large variation in home range size among …

The Antiviral Activity Of Curcumin On Herpes Simplex Virus-1, Susan A. Pungitore

Theses, Dissertations and Culminating Projects

Herpes simplex virus 1 is a common human pathogen that causes an initial productive infection followed by a lifelong latent infection of sensory neurons. Although the active infection is self-limiting in healthy populations, HSV can pose serious health risks to immunocompromised individuals. Furthermore, drug-resistant strains of HSV-1 have emerged in the human immunodeficiency virus (HIV) afflicted populations, necessitating the development of efficacious treatment options to combat HSV-1 infections. In recent years, plant derived products have gained popularity as promising antiviral agents. Studies of plant-derived compounds, including polysaccharide extracts from algae and hydrolyzable tannins, indicated that antiviral activity may be contributed …

Drag Reduction In Wave-Swept Macroalgae: Alternative Strategies And New Predictions, Patrick T. Martone, Laurie Kost, Michael L. Boller

Biology Faculty/Staff Publications

Premise of the study: Intertidal macroalgae must resist extreme hydrodynamic forces imposed by crashing waves. How does frond flexibility mitigate drag, and how does flexibility affect predictions of drag and dislodgement in the field? Methods: We characterized flexible reconfiguration of six seaweed species in a recirculating water flume, documenting both shape change and area reduction as fronds reorient. We then used a high-speed gravity-accelerated water flume to test our ability to predict drag under waves based on extrapolations of drag recorded at slower speeds. We compared dislodgement forces to drag forces predicted from slow- and high-speed data to generate new …

Role Of Progesterone Receptors In Neonatal Ovary Development, Marta N. Dzyadyk

Renée Crown University Honors Thesis Projects - All

In female mammals, proper oocyte development is a vital prerequisite for future gamete viability and fertility. This development of oocytes, known as oogenesis, begins with the migration of primordial germ cells to the genital ridge of the early embryo, where multiple rounds of mitotic division occur without complete cytokinesis. The result is temporary cyst morphology. Cyst breakdown is a crucial process in the next developmental stage, resulting in formation of the single oocytes which will grow in follicles surrounded by granulosa cells and eventually develop into eggs. These aspects of embryogenesis are conserved across multiple species, including Drosophila, mice, and …

The Expression Pattern Of The Xenopus Laevis Rod-Derived Cone Viability Factor1 (Rdcvf1), Vera Osafo

Renée Crown University Honors Thesis Projects - All

In the United States alone, more than one million people are blind. One of the leading causes of blindness is the retinal disease, Retinitis Pigmentosa (RP). RP is a heterogeneous group of inherited disorders characterized by the initial loss of rod photoreceptors. Approximately 100,000 people in the United States and 1.5 million people worldwide are affected by RP. Unfortunately, there is no cure. In humans with RP, it is known that the loss of rod photoreceptors leads to degeneration of cones. Rods photoreceptors are responsible for vision under low light conditions and cone photoreceptors are required for color vision and …

Challenging Disciplinary Boundaries In The First Year: A New Introductory Integrated Science Course For Stem Majors, Lisa Gentile, Lester Caudill, Mirela Fetea, April L. Hill, Kathy Hoke, Barry Lawson, Ovidiu Z. Lipan, Michael Kerckhove, Carol A. Parish, Krista J. Stenger, Doug Szajda

Department of Math & Statistics Faculty Publications

To help undergraduates make connections among disciplines so they are able to approach, evaluate, and contribute to the solutions of important global problems, our campus has been focused on interdisciplinary research and education opportunities across the science, technology, engineering, and mathematics (STEM) disciplines. This paper describes the mobilization, planning, and implementation of a first-year interdisciplinary course for STEM majors that integrates key concepts found in traditional first-semester biology, chemistry, computer science, mathematics, and physics courses. This team-taught course, Integrated Quantitative Science (IQS), is half of a first-year student’s schedule in both semesters and is composed of a double lecture and …

The Face Of Extinction: Are Charismatic Species More Vulnerable To Endangerment?, Andrée M. Brisson

Master's Theses or Doctor of Nursing Practice

Conservationists have suggested extinction is non-random; some species are more prone to extinction than others. Multiple traits (e.g., large bodied, long-lived, slow-reproducing, migratory, habitat and/or dietary specialists) have been cited as contributing to the endangerment of species. Due to global anthropogenic demand for wild species (e.g., sport, trade, fashion, medicine, religion, food), I propose charisma as an additional trait of endangerment. This predicts charismatic species are more often targets of direct exploitation than less charismatic species, and that global demand will continue to increase with world population and development. These species represent our most iconic and animated organisms. I quantified …

Survey Of The Freshwater Gastropods Of Southeastern Kansas With Emphasis On The Distribution And Habitat Use Of The Delta Hydrobe (Probythinella Emarginata), Bryan Sowards

Master's Theses or Doctor of Nursing Practice

The status of many aquatic gastropods in North America is not well understood. Many are exposed to threats similar to those that affect bivalves and other aquatic macroinvertebrates. The delta hydrobe (Probythinella emarginata) is a gill-breathing (prosobranch) snail that occurs in the northeastern United States and eastern Canada. It is 1 of only 5 species of prosobranchs in Kansas and is highly sensitive to changes in water quality within watersheds. Probythinella emarginata is presumed to be a Pleistocene relic in the state; it was first collected alive in Kansas in 2001 within Cedar Creek, Chase County, Kansas. I surveyed 13 …

The Ecological Roles Of Podostemum Ceratophyllum And Cladophora In The Habitat And Dietary Preferences Of The Riverine Caddisfly Hydropsyche Simulans, Brenna Tinsley

Mahurin Honors College Capstone Experience/Thesis Projects

The net-spinning caddisfly Hydropsyche simulans can be a common inhabitant of shallow reaches in riverine systems, and is easily the most common hydropsychid in the upper Green River, Kentucky. This study was performed in summer 2011 and focused on two main questions: 1. Do the larvae of the riverine caddisflies H. simulans and Cheumatopsyche preferentially inhabit dense patches of P. ceratophyllum compared to bare substrates in the upper Green River?, and 2. Do larvae of H. simulans and Cheumatopsyche consume the filamentous alga Cladophora during the annual late summer algal bloom in the upper Green River? Densities of both hydropsychid …

Hydra Vulgaris As A High Throughput Invertebrate For Anti-Epilepsy Drugs, Bianca Marie Lauro

Senior Honors Projects

No abstract provided.

Microrna Regulation Of Prostate Cancer Stem/Progenitor Cells And Prostate Cancer Development, Can Liu

Dissertations and Theses (Open Access)

Most human tumors contain a population of cells with stem cell properties, called cancer stem cells (CSCs), which are believed to be responsible for tumor establishment, metastasis, and resistance to clinical therapy. It’s crucial to understand the regulatory mechanisms unique to CSCs, so that we may design CSC-specific therapeutics. Recent discoveries of microRNA (miRNA) have provided a new avenue in understanding the regulatory mechanisms of cancer. However, how miRNAs may regulate CSCs is still poorly understood. Here, we present miRNA expression profiling in six populations of prostate cancer (PCa) stem/progenitor cells that possess distinct tumorigenic properties. Six miRNAs were identified …

Clam (Corbicula Fluminea) As A Potential Sentinel Of Human Norovirus Contamination In Freshwater, Xunyan Ye

Dissertations

The purpose of this study was to evaluate and validate the use of the clam Corbicula fluminea as a sentinel of human noroviruses (HuNoV) contamination in freshwater. The first specific aim was to develop a new method to extract HuNoV RNA from contaminated bivalves (e.g. oysters, clams) that would be much faster than existing methods. The procedure developed includes an initial total RNA extraction using TRI Reagent, followed by HuNoV RNA concentration and purification using biotinylated probe-capture technology. HuNoV RNA is finally detected by real-time RT-PCR. Using bivalve homogenates spiked with HuNoV, 100 PCR detection units of the virus was …

The Senescence-Associated Secretory Phenotype (Sasp) And Redox-Dependent Invasion Of Metastatic Cancer Cells, Brooke A. Pati

Biological Sciences

Throughout your lifetime renewable tissues and those which are exposed to prolonged inflammation experience an accumulation of senescent cells. These cells have previously been shown to acquire the senescence-associated secretory phenotype (SASP) that promotes proliferation and tumorigenesis of epithelial cells, thus increasing the invasive ability of tumor cells (1). SASP is characterized by an upregulation in mRNA levels of a number of secretory factors, such as growth factors, cytokines, and chemokines. It has been shown that lifetime exposure to oxidative stress can influence cell cytoskeleton reorganization and influence aging processes (2). In addition matrix metalloproteinases are key SASP factors that …

Endotoxin-Induced Inflammation & Morphine-Induced Conditioned Place Preference In The Hiv-1 Transgenic Rat, Natasha F. Homji-Mishra

Seton Hall University Dissertations and Theses (ETDs)

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Early Embryology Of The Insect Oligotoma Saundersii (Embiidina) Using Targeted Genes As Developmental Landmarks, Omar Doria

Theses and Dissertations - UTB/UTPA

Embiidina, or "webspinners", is a small, sexually dimorphic, polyneopterous insect order and is the only order to spin silk throughout their life cycle. Unique morphological features and the phylogenetic position of Embiidina make it an attractive subject for study of the evolution and development of the insect body plan and the origin of novel morphological features. Oligotoma saundersii is easily cultured and a viable laboratory organism. It has a fairly standard short-germ embryogenesis process requiring 453 hours at 28°C with progressive development beginning in the anterior region. Preliminary work on targeted developmental genes has yielded small portions of seven genes. …

Assessment Of Oxidative Stress Gene Expression In Brassicaceae Plant Species Using A Real-Time Pcr Method, Florestella Ruiz

Theses and Dissertations - UTB/UTPA

Many plant species in the Brassicaceae plant family possess the ability to accumulate heavy metals. One challenge in using these hyperaccumulator plants for phytoremediation is that they are slow growing and often have a low biomass. This is a limitation should they be utilized for phytoremediation. However, the mechanisms by which hyperaccumulators tolerate heavy metals are of interest as these characteristics can be engineered into a plant species that is more suited for use in phytoremediation. Therefore, modification of oxidative stress response (OSR) gene expression in Brassicaceae species has become of great interest. Oxidative stress gene induction in both non-accumulator …

Development And Evaluation Of A Mouse Neocortical Cells Neurodevelopment Assay To Assess The Effects Of Pyrethroids, Stephanie I. Savino

Pell Scholars and Senior Theses

Pyrethroid insecticides have been used for more than 40 years and account for 25% of the global insecticide market with household, agricultural and public health applications. With increasing use of pyrethroids over recent years, human exposure to these chemicals is likely. The acute toxicity of pyrethroids to mammalian adults has been documented as moderately toxic by the U.S. Environmental Protection Agency. However, little evidence is available regarding the potential toxicological effects of pyrethroids on mammalian neurodevelopment. In this study, a neurodevelopment assay was developed for future investigation of potential pyrethroid effects on the neuronal development of Mus musculus neocortical cells.

Chronic Stress Promotes Tumor Growth Through Increased Bdnf Production And Neo-Innervation, Julie K. Allen

Dissertations and Theses (Open Access)

Background: Activation of the sympathetic nervous system (SNS) in response to chronic biobehavioral stress results in high levels of catecholamines and persistent activation of adrenergic signaling, which promotes tumor growth and progression. However it is unknown how catecholamine levels within the tumor exceed systemic levels in circulation. I hypothesized that neo-innervation of tumors is required for stress-mediated effects on tumor growth.

Results: First, I examined whether sympathetic nerves are present in human ovarian cancer samples as well as orthotopic ovarian cancer models. Immunohistochemical (IHC) staining for neurofilament revealed that catecholaminergic neurons are present within tumor tissue. In order to determine …

The Histone Deacetylase Inhibitor, Ms-275, Sensitizes Metastatic Osteosarcoma To Fasl-Induced Cell Death: A Role For C-Flip, Krithi R. Bindal

Dissertations and Theses (Open Access)

The purpose of this study was to determine the effects of the histone deacetylase inhibitor, MS-275, on the Fas signaling pathway and susceptibility of osteosarcoma (OS) to Fas ligand (FasL)-induced cell death. OS metastasizes almost exclusively to the lungs. We have shown that Fas expression in OS cells is inversely correlated with their metastatic potential. Fas⁺ cells are rapidly eliminated when they enter the lungs via interaction with FasL, which is constitutively expressed in the lungs. Fas^- OS cells escape this FasL-induced apoptosis and survive in the lung microenvironment. Moreover, upregulation of Fas in established OS lung metastases …

Host Plant Use By Competing Acacia-Ants: Mutualists Monopolize While Parasites Share Hosts, Stefanie Kautz, Daniel J. Ballhorn, Johannes Kroiss, Steffen U. Pauls, Corrie S. Moreau, Sascha Eilmus, Erhard Strohm, Martin Heil

Biology Faculty Publications and Presentations

Protective ant-plant mutualisms that are exploited by non-defending parasitic ants represent prominent model systems for ecology and evolutionary biology. The mutualist Pseudomyrmex ferrugineus is an obligate plant-ant and fully depends on acacias for nesting space and food. The parasite Pseudomyrmex gracilis facultatively nests on acacias and uses host-derived food rewards but also external food sources. Integrative analyses of genetic microsatellite data, cuticular hydrocarbons and behavioral assays showed that an individual acacia might be inhabited by the workers of several P. gracilis queens, whereas one P. ferrugineus colony monopolizes one or more host trees. Despite these differences in social organization, neither …

Social Organization And Decision Making In North American Bison: Implications For Management, Ryan A. Shaw

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Social organization varies widely among herbivores, and the level of social organization in bison is widely debated. I hypothesized that when mother-daughter relationships are allowed to develop, bison form long-term associations. In my study, 25 treatment mothers were selected from a free-ranging herd and kept together with their calves, while 25 control females had their calves forcefully removed. Treatment mothers and offspring had by far the greatest number of associations with a greater percentage of individuals with a half weight index (HWI) > 0.50. The strongest associations (HWI > 0.31) were among treatment mothers and their offspring. Moreover, these associations persisted over …

Caddisfly Larvae (Limnephilidae) As Predators Of Newt (Taricha Granulosa) Eggs: Another Player In The Coevolutionary Arms Race Revolving Around Tetrodotoxin?, Brian G. Gall

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Some populations of newts (Taricha granulosa) possess large quantities of the neurotoxin tetrodotoxin (TTX) in their skin and eggs. Many populations of garter snake (Thamnophis sirtalis) are resistant to this toxin and can consume large numbers of newts with no negative effects. Despite the wealth of information acquired on the interaction between newts and their predator, garter snakes, very little research has been conducted on possible interactions between newts and other predators. I conducted a suite of experiments examining for the presence of other predators on newts, specifically focusing on predators of their eggs and larvae. …