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A Low-Water Crossing Impacts Movement Behavior Of Northern Hog Suckers In An Ozark Stream, Jeff Michael Williams

Graduate Theses/Dissertations

Low-water crossings are common in Ozark streams and can restrict longitudinal movement in fishes. I evaluated the impact of the Cedar Grove low-water crossing on Northern Hog Sucker Hypentelium nigricans movement behavior in Missouri’s Current River. Radio-tagged fish upstream (henceforth ‘above’; N = 24) and downstream (henceforth ‘below’; N = 26) of the crossing were followed monthly for a year to assess 1) frequency of fish passage, 2) direction of passage, and 3) maximum displacement of mobile (displacement > 1 km) fish. I then looked at diel movement behavior of stationary (displacement < 1 km) fish near the crossing to assess 1) total displacement and linear home range, 2) direction of diel displacement, and 3) habitat use. Passage was limited to four below-tagged fish and was more likely to occur in the upstream direction and during high flow. The direction of maximum displacement in mobile fish was primarily away from the crossing, and below-tagged fish exhibited over seven times greater displacement than above-tagged fish. Diel displacement and linear home range were greater in above-tagged fish, likely due to degraded upstream habitat that increased the distance between day and night habitats. My results suggest the crossing is a semi-permeable barrier that also affects local-scale movement behavior of Northern Hog Suckers. Alternatives to the low-water crossings at Cedar Grove, such as modifying the side channel into a fish bypass, should be considered to promote natural longitudinal movement of fishes in the upper Current River.

Stress And Body Composition Of Juvenile Alligator Snapping Turtles (Macrochelys Temminckii), Brandon Scott Tappmeyer

Graduate Theses/Dissertations

The alligator snapping turtle (Macrochelys temminckii), is a species of conservation concern that is the subject of multiple head-start and reintroduction efforts across its range. In captive propagation programs, producing offspring that are in optimal physiological condition maximizes the likelihood of success after release. The purpose of my study was to compare stress and body composition between one free-ranging reintroduced population and two captive populations. The two captive populations were both housed in southern Oklahoma, but one group was reared indoors whereas the other inhabited outdoor ponds at a national fish hatchery. I used circulating glucocorticoid (corticosterone) concentrations as an …

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Genome To Phenome: Improving Animal Health, Production, And Well-Being – A New Usda Blueprint For Animal Genome Research 2018–2027, Caird Rexroad, Jeffrey Vallet, Lakshmi Kumar Matukumalli, James Reecy, Derek Bickhart, Harvey Blackburn, Mark Boggess, Hans Cheng, Archie Clutter, Noelle Cockett, Catherine Ernst, Janet E. Fulton, John Liu, Joan Lunney, Holly Neibergs, Et Al.

Animal, Dairy, and Veterinary Science Faculty Publications

In 2008, a consortium led by the Agricultural Research Service (ARS) and the National Institute for Food and Agriculture (NIFA) published the “Blueprint for USDA Efforts in Agricultural Animal Genomics 2008–2017,” which served as a guiding document for research and funding in animal genomics. In the decade that followed, many of the goals set forth in the blueprint were accomplished. However, several other goals require further research. In addition, new topics not covered in the original blueprint, which are the result of emerging technologies, require exploration. To develop a new, updated blueprint, ARS and NIFA, along with scientists in the …

Epidemic Growth Rates And Host Movement Patterns Shape Management Performance For Pathogen Spillover At The Wildlife–Livestock Interface, Kezia R. Manlove, Laura M. Sampson, Benny Borremans, E. Frances Cassirer, Ryan S. Miller, Kim M. Pepin, Thomas E. Besser, Paul C. Cross

United States Department of Agriculture Wildlife Services: Staff Publications

Managing pathogen spillover at the wildlife–livestock interface is a key step towards improving global animal health, food security and wildlife conservation. However, predicting the effectiveness of management actions across host–pathogen systems with different life histories is an on-going challenge since data on intervention effectiveness are expensive to collect and results are system-specific.We developed a simulation model to explore how the efficacies of different management strategies vary according to host movement patterns and epidemic growth rates. The model suggested that fast-growing, fast-moving epidemics like avian influenza were best-managed with actions like biosecurity or containment, which limited and localized overall spillover risk. …

Demersal Fish Use Of Printed Oyster Shells As Nesting Habitat In North Inlet Estuary, Sc, Annie Boyd, Juliana Harding

Honors Theses

Temperate estuarine blenny species establish subtidal territories and nesting sites. Four blenny species co-occur in North Inlet, SC including the striped blenny, Chasmodes bosquianus, crested blenny, Hypleurochilus geminatus, feather blenny, Hypsoblennius hentzi, and freckled blenny, Hypsoblennius ionthas. All four fishes use empty oyster (Crassostrea virginica) shells as nesting sites. Current 3D printer technology was used to create standard nest substrates to describe relationships between blenny habitat use and nest site dimensions. Replicate printed shells of 2 gape widths (5, 7 mm) for each of 2 shell cavity volumes (22 mL, 15mL, Oyster A and …

A Fishy Problem: Effects Of Atlantic Salmon Farming In The Pacific Ocean, Madeleine A. Griffith

Student Theses 2015-Present

In this report, I explore the historical, climatological, economic, and ethical issues created by the contemporary industrial salmon farming practices off Pacific coast of the United States and Canada. Chapter 1 utilizes a variety of sources from Stephen Hume’s A Stain upon the Sea to Miller’s Living in the Environment, to examine the integral part salmon plays in both freshwater and marine ecosystems, the ecosystem services salmon contribute in wild and farmed settings, and the trends in salmon consumption around the world. Chapter 2 examines the historically relevant role salmon held among indigenous societies and how that role has changed …

Effects Of Temperature On Microbial Parameters Associated With Decaying Plant Litter In A Stream Microcosm Experiment, Hunter David Pates

Electronic Theses and Dissertations

Increases in mean surface air temperature under climate-change predictions are expected to affect microbial activity, as well as carbon dynamics in aquatic ecosystems. I explored responses of litter-associated decomposers along temperature ranges typical of temperate streams in laboratory microcosms simulating stream conditions. The objectives of this study were to determine (1) whether the effects of temperature on stream leaf-associated microorganisms can be explained by the Metabolic Theory of Ecology (MTE); (2) if the effects of temperature are the same across temperatures commonly found in temperate streams; and (3) if there are differences in the magnitude of responses to temperature among …

Associations Of Adiposity And Diet Quality With Serum Ceramides In Middle-Aged Adults With Cardiovascular Risk Factors, Margaret A. Drazba, Ida Holaskova, Nadine R. Sahyoun, Melissa Ventura Marra

Faculty & Staff Scholarship

Rates of adverse cardiovascular events have increased among middle-aged adults. Elevated ceramides have been proposed as a risk factor for cardiovascular events. Diet quality and weight status are inversely associated with several traditional risk factors; however, the relationship to ceramides is less clear. This study aimed to determine associations of adiposity and diet quality with circulating ceramides in middle-aged adults (n = 96). Diet quality was estimated using the Healthy Eating Index 2015 (HEI-2015). Serum ceramide concentrations were determined by liquid chromatography–mass spectrometry. A ceramide risk score was determined based on ceramides C16:0, C18:0, and C24:1 and their ratios to …

Assessing Populations Of Eastern Brook Trout (Salvelinus Fontinalis) Above And Below Waterfalls In Mountain Streams Of Virginia, Hannah Eisemann Macmillan

Masters Theses, 2010-2019

Anthropogenically driven factors, such as increasing temperature and sediment in valley streams, acidification of mountain streams, and the introduction of non-native trout, are restricting habitat suitable for healthy populations of eastern brook trout (Salvelinus fontinalis) throughout their native Appalachian range. Brook trout are important as predators of insects in mountain streams and as a favorite of anglers. It is crucial that remaining populations in sustainable habitats be identified and preserved. Waterfalls are geologic knickpoints preventing base-level lowering that create unique, stable landscapes above them, which may alleviate the temperature-productivity/acidity “habitat squeeze” for populations of brook trout and could …

Contagious Yawning In The Domestic Cat (Felis Catus), Ariel M. Lombardo Aghishian

Theses and Dissertations

This study investigates contagious yawning in domestic cats towards their owners, looking at potential links with empathy. Results showed no significant difference in yawning between conditions. The solitary nature of wildcats and their shared ancestor, and the unique social behavior in domesticated cats may explain these findings.

Observation Of Visitors At A Chimpanzee (Pan Troglodytes Schweinfurthii) Ecotourism Site Reveals Opportunity For Multiple Modes Of Pathogen Transmission, Darcey Glasser

Theses and Dissertations

Chimpanzee (Pan troglodytes) tracking is a popular ecotourism activity across Sub-Saharan Africa, offering visitors a personal wildlife experience. However, chimpanzee ecotourism may increase the risk of disease transmission between chimpanzees and people. This study assessed how tourist behaviors might facilitate cross-species disease transmission in Kibale National Park, Uganda.

Resource Assessment Report Western Rock Lobster Resource Of Western Australia. Addendum 1, Simon De Lestang, Jason How, Nick Caputi

WA Marine Stewardship Council report series

The West Coast Rock Lobster Fishery was certified under the Marine Stewardship Council (MSC) standard in 2000, and was the first fishery in the world to be MSC certified. Since then it has successfully been re-accredited in 2006, 2012 and 2017. This document provides an update on changes to the fishery for annual audits by the MSC certification body and the annual stock assessment update for quota setting of the western rock lobster resource.

Analysis Of Rwandan Smallholder Poultry Farmer Needs In Production Manuals, Holly Henry

Poultry Science Undergraduate Honors Theses

As global population continues to grow improving agricultural production become even more important. Smallholder farmers make up a large portion of agricultural production in developing countries (Gueye, 2000; Upton, 2000). East Africa is one sector which has seen growth in poultry production over the pas five years. (Vernooij, Masaki, & Meiher-Willems, 2018). One major constraint to smallholder production is lack of access to educational materials and production guidelines (Mack et al., 2005).

The purpose of the study was to describe methods of production utilized by smallholder farmers in Rwanda and determine what information should be included in a production guide. …

Feasibility Of Custom Aquaponics For Home Use, Jesse Blanchard

Agricultural Economics and Agribusiness Undergraduate Honors Theses

The primary goal of this research is to access the feasibility of implementing and operating small scale aquaponic systems in a home setting to serve as a means of producing high quality fresh produce and fish protein to supplement similar store-bought products. Factors such as system cost, skill level and management requirements will be addressed alongside customizable, educational and sustainable aspects of aquaponic systems to determine whether home aquaponic systems are a feasible option for the home grower. To elaborate, feasibility in this research will refer to both economic costs relative to costs of the system. Outlined in this short …

Observations And Applications Of Husbandry Methodologies On A Backyard Poultry Farm In Dangriga, Belize, Bailey Carpenter

Animal Science Undergraduate Honors Theses

This study explores the husbandry methodologies on a backyard poultry farm in Dangriga, Belize, with the purpose of producing a set of guidelines for backyard poultry growers that have limited resources in similar regions. The majority of data collection occurred through survey questions approved by the IRB, necropsies approved by IACUC, and general observations. There has been a steady increase in poultry production in developing regions due to its positive effects on income and relative nutrition. However, due to a lack of accessible communication and education regarding effective and safe poultry production, these operators typically see poor productivity and/or profitability …

American White Pelicans, Tommy King

Wildlife Damage Management Technical Series

American white pelicans (Pelecanus erythrorhynchos, Figure 1) threaten aquaculture producers by direct predation and the spread of disease. They are also considered competition and a nuisance by some sports fishermen. Pelicans can also damage pond levees and crops, such as rice, by trampling the vegetation and depositing guano. A combination of wildlife damage management techniques is often necessary to reduce pelican damage to these resources. Aquaculture Prior to the winter of 1992, American white pelican depredations at catfish facilities in the Delta regions of Arkansas and Mississippi were limited, and birds were easily dispersed from the area. Since 1992, however, …

The Effects Of Pre And Post Exercise Low-Level Laser Therapy On Biochemical Markers Of Skeletal Muscle Fatigue In Equines, Carson Freeman

Animal Science Undergraduate Honors Theses

Our objective was to determine whether administering low-level laser therapy before or after exercise had the greatest effect on biochemical markers of skeletal muscle fatigue in equines such as cortisol and blood lactate. Twelve quarter horses were divided into three groups: Group A received no laser therapy, Group B received laser therapy before exercise, and Group C received laser therapy after exercise. A Class II ERCHONIA ® PL500 handheld low-level laser was utilized for treatment with a wavelength of 635nm. Exercise was utilized using a horse walker system for 30 minutes five days a week for three weeks. Blood was …

Predicting Habitat Choice After Rapid Environmental Change, Philip H. Crowley, Pete C. Trimmer, Orr Spiegel, Sean M. Ehlman, William S. Cuello, Andrew Sih

Biology Faculty Publications

Decisions made while searching for settlement sites (e.g., nesting, oviposition) often have major fitness implications. Despite numerous case studies, we lack theory to explain why some species are thriving while others are making poor habitat choices after environmental change. We develop a model to predict (1) which kinds of environmental change have larger, negative effects on fitness, (2) how evolutionary history affects susceptibility to environmental change, and (3) how much lost fitness can be recovered via readjustment after environmental change. We model the common scenario where animals search an otherwise inhospitable matrix, encountering habitats of varying quality and settling when …

Biological, Ecological And Structural Monitoring Report: Southwest Recreational Fishing Artificial Reef Trial, Geographe Bay, Western Australia, Paul D. Lewis, Mark Pagano

Fisheries Research Reports

This report details the key findings from the Biological and Ecological monitoring of the Southwest Artificial Reef Trial over the first four years after they were deployed in autumn of 2013.

Hiding In The Lianas Of The Tree Of Life: Molecular Phylogenetics And Species Delimitation Reveal Considerable Cryptic Diversity Of New World Vine Snakes, Robert C. Jadin, Christopher Blair, Michael J. Jowers, Anthony Carmona, John C. Murphy

Publications and Research

The Brown Vine Snake, Oxybelis aeneus, is considered a single species despite the fact its distribution covers an estimated 10% of the Earth’s land surface, inhabiting a variety of ecosystems throughout North, Central, and South America and is distributed across numerous biogeographic barriers. Here we assemble a multilocus molecular dataset (i.e. cyt b, ND4, cmos, PRLR) derived from Middle American populations to examine for the first time the evolutionary history of Oxybelis and test for evidence of cryptic lineages using Bayesian and maximum likelihood criteria. Our divergence time estimates suggest that Oxybelis diverged from its sister genus, Leptophis …

Cognitive Models Of Defense Behaviors In Hosts Of Brood Parasites, Thomas J. Manna

Dissertations, Theses, and Capstone Projects

Social parasites exploit the behavioral repertoire of their hosts for their own benefit, thereby reducing host reproductive success. Whether and how hosts respond to prevent, reduce, or eliminate the costs of parasitism requires the characterization of host cognitive algorithms in response to parasites. In this dissertation, I review the suite of the defense behaviors and decision rules of hosts targeted by avian and insect brood parasites, and present new experimental data on the detection of parasitism through the visual system of focal host species. In Chapter 1, I review extensive data already accumulated to isolate the cognitive mechanisms used by …

An Analysis Of Citizen Science And Its Effect On Marine Plastic Pollution, Kathryn Munster

Renée Crown University Honors Thesis Projects - All

My Honors thesis is an analysis of pollution data to gain more insight about the growing problem of marine plastic pollution. I retrieved online datasets collected by the Clean Swell trash collection mobile application and then analyzed this data using the Python programming language. After my Python analysis, I used Tableau to create data visualizations. This paper analyzes the effect that citizen science has on plastic pollution. Syracuse University’s recycling and trash figures, provided by Syracuse Haulers, are also analyzed. The purpose of including Syracuse University’s data is to bring a local point of view to this project and possibly …

Development And Evaluation Of Selected Chemoprophylaxis Candidates And A Candidate Live-Attenuated Vaccine For Prevention Of Histomoniasis In Turkeys, Lesleigh Beer

Graduate Theses and Dissertations

Histomoniasis, commonly known as blackhead disease, has increased in prevalence due to the regulatory ban of prophylactics and therapeutics within the past 30 years. The objective of this thesis was to evaluate the efficacy of selected dietary chemoprophylaxis candidates as well as an in vitro live-attenuated vaccine candidate Histomonas meleagridis for prevention of histomoniasis. Chapter one addresses deoxycholic acid and a biliogenic diet intended to endogenously increase production of this secondary bile acid. Deoxycholic acid was effective in vitro but failed to prevent histomoniasis when evaluated during the in vivo experimental disease trial with turkeys. The biliogenic diet did not …

Hormone Signaling, Gene Expression, And Mitochondrial Hormone Receptor Expression In Avian Muscle (Cells), Kentu Rushadd Lassiter

Graduate Theses and Dissertations

Mitochondria are vital to the proper growth and function of muscle cells since they’re responsible for the majority of ATP production used for cellular energy. Previous studies have investigated how differences in mitochondrial function affects feed efficiency (FE) in broilers phenotyped for High and Low FE. Low FE broilers have been shown to have increased levels of reactive oxygen species (ROS), thus contributing to higher levels of oxidative stress and damage seen in these birds. Global gene and protein expression studies conducted on breast muscle of the High FE and Low FE phenotypes have suggested that differences in mitochondrial function …

The Effects Of Salinity On Zootechnical Performance Of Spotted Seatrout (Cynoscion Nebulosus) In Recirculating Aquaculture Systems, Eric Gigli

Master's Theses

The spotted seatrout (Cynoscion nebulosus) is a euryhaline finfish candidate for marine aquaculture in the northern Gulf of Mexico. Aquaculture of this species currently uses salinities of 25 psu or greater making production challenging in areas where high salinity water is not available. This study aimed to document the effects of salinity on zootechnical performance of spotted seatrout embryos, early larvae, and juveniles in recirculating aquaculture systems to assist with the development of protocols for low salinity culture.

Embryos obtained from a volitional spawn at 29 psu were incubated at three salinities (12.5, 18.75, or 25 psu) until …

Conservation Of Threatened Canada-Usa Trans-Border Grizzly Bears Linked To Comprehensive Conflict Reduction, Michael F. Proctor, Wayne F. Kasworm, Kimberly M. Annis, A. Grant Machutchon, Justin E. Teisberg, Thomas G. Radandt, Chris Servheen

Human–Wildlife Interactions

Erratum to "Conservation of Threatened Canada-USA Trans-border Grizzly Bears Linked to Comprehensive Conflict Reduction". https://doi.org/10.26077/yjy6-0m57

Seasonal Changes In Black-Capped Chickadee (Poecile Atricapillus) Social Structure And Gargle Vocalizations, James Vanorman

All NMU Master's Theses

Many organisms form social groups for many different reasons. Individuals within a group gain benefits from having a way of effectively communicating with their group, especially in organisms that maintain their social affiliations for long periods of time. In birds, vocalizations are the main means of communicating among individuals. When there are multiple groups of birds in an area, each group could share vocalizations. This sharing can then create local dialects. Black-capped chickadees (Poecile atricapillus) are small songbirds of temperate habitats of North America that group together in larger flocks every winter. Dialects of the gargle vocalization have …