Digital Commons Network^™

Impact Of Diet And Quality Grade On Meat Quality Characteristics And Their Relationship To Oxidative Stress, Nicolas A. Bland

Department of Animal Science: Dissertations, Theses, and Student Research

Marbling and tenderness in meat are some of the most impactful factors for the consumer eating experience. The cause of the relationship between marbling and tenderness is still unresolved. This study was conducted to evaluate the effects of feeding different types of processed corn, with or without distiller grains on oxidative stress, and how that relates to tenderness and shelf life of beef steaks of differing quality grades. Steers (n = 240) were finished on dry rolled corn (DRC), DRC + 30% dried distillers grains (DDGS), steam flaked corn (SFC), or SFC + 30% DDGS. Cattle were fed 10 …

Evaluation Of Maternal Diet And Its Effect On Milk Composition And Piglet Health And Growth Performance, Shana Marie Barnett

Department of Animal Science: Dissertations, Theses, and Student Research

Both graduate research and graduate teaching duties work together to help to develop a graduate student’s skills both in the classroom and on their research experiments. Being both a GTA and GRA allows a student to form more sound hypotheses, connect better with students, and better understand their own research.

During the time as a GTA and GRA four surveys were developed to analyze different groups of students and their learning environment and two animal experiments were conducted to evaluate maternal diet and its effect on milk composition and piglet health and growth performance.

The surveys given to students consisted …

How Water Level And Irrigation Practices Affect Waterbird Community, Nesting, And Foraging Habitat Use On The Duck Valley Indian Reservation, Jamie L. Burke

Boise State University Theses and Dissertations

Loss of habitat continues to threaten all bird populations. Despite efforts for conservation of wetlands, waterbirds continue to face habitat threats especially in western North America where water resources are limited across the landscape. The White-faced Ibis (Plegadis chihi) is a colonial nesting waterbird of conservation concern that builds nests in emergent vegetation of freshwater wetlands throughout the western United States. An ibis breeding colony site located at the Blue Creek Wetland complex on Duck Valley Indian Reservation may face habitat threats in the future due to plans intended to increase irrigation water use efficiency. Plans include manipulation …

The Effects Of Electrical Biostimulation And Silver Ions On Porcine Fibroblast Cells, Yuanfeng Zhao

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Electrical biostimulation is surrounding us in the environment, and some forms have been applied to medical therapy and clinical treatment. How electrical biostimulation affects cell function and behavior is for the most part largely unknown. There is some evidence that somatic cells might have the ability to transform to stem cells after exposure to electrical biostimulation in the presence of silver ions, which may have applications to wound healing and tissue regeneration. The use of silver has a long history in jewelry and silverware making, food storage, industrial and household production, and photographic industries. The medical application of silver has …

Forest Grouse Ecology And Management In The Bear River Range Northern Utah, Skyler Y. Farnsworth

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

To better manage dusky grouse (Dendragapus obscurus) and ruffed grouse (Bonasa umbellus), hereafter forest grouse, managers require better information on forest grouse population status and habitat selection. To address this need, from 2015-2017, I conducted research on a sympatric populations inhabiting the Bear River Range of northern Utah to develop a breeding survey protocol, assess habitat selection, evaluate dusky grouse response to livestock grazing, and determine hunter harvest rates.

The breeding census protocol that I developed compared listening intervals with and without electronic playback calls at designated survey stop locations. Using digital mapping software, I plotted …

Differences In Learning And Gene Expression In Brains Of Male And Female Bicyclus Anynana, Gabrielle Agcaoili

Biological Sciences Undergraduate Honors Theses

One way to understand the variation in the behavior of animals is by looking at the genes involved. We were particularly interested in behavioral differences between the sexes. How might these differences be manifested in the brain? This study worked to answer this question by using male and female butterflies of the species Bicyclus anynana, examining what is going on in the brains of males and females as they learned from a social exposure. We focused in on how sex plays a role in behavior and learning; it has been seen that males and females respond to the same social …

Detection Of Woody Breast Condition In Broiler Carcasses And Product Utilization In Further Processing, Juan Pablo Caldas Cueva

Graduate Theses and Dissertations

Woody Breast (WB) myopathy causes significant economic losses to the global poultry industry and the lack of objective, non-invasive and rapid methods for its detection as well as profitable alternatives for its utilization are contributing factors. This dissertation is divided into two main areas. The first area aimed to determine if there are carcass conformation changes that can be used to identify WB characteristics in commercial broilers using image analysis. In the first experiment, images of broiler carcasses were captured before evisceration to obtain and evaluate carcass measurements from the breast region. Eight image measurements and four ratios were used …

Lesioning Of The Nucleus Of The Hippocampal Commissure Followed By Food Deprivation Stress In Birds Demonstrates Simultaneous Involvement In Both The Hypothalamo-Pituitary-Adrenal Axis And The Hypothalamo-Pituitary-Thyroid Axis, Michael Thomas Kidd Jr.

Graduate Theses and Dissertations

The hypothalamo-pituitary-adrenal (HPA) axis is the regulatory system for the neuroendocrine stress response within vertebrates. Within the HPA axis corticotropin releasing hormone (CRH) is a major regulator and driving hormone. A structure named the nucleus of the hippocampal commissure (NHpC) has been found to contain CRH neurons and also these neurons respond to early food deprivation stress significantly prior to the paraventricular nucleus (PVN), the major driving nucleus of the classic neuroendocrine HPA axis. The objective of this study was to perform a knock down of the NHpC via electrolytic lesioning, thus eliminating a significant portion of its population of …

Development Of Arkansas Net Energy Equation, Katie Hilton

Graduate Theses and Dissertations

The modern broiler is growing at a rapid rate generating tremendous amounts of heat. A sensitive Net Energy (NE) system is needed to measure body heat production (HP) generated primarily by daily maintenance and synthesis and degradation of myofibrillar and sarcoplasmic protein. The first two chapters present evaluation of the classic way to calculate NE versus a new methodology; the Arkansas NE (Ark NE) system, with birds from two genetic lines fed diets with different AA content or different ME content in two different environmental temperatures.

Utilizing together the Net Energy maintenance (NEm), determined from indirect calorimetry, and Net Energy …

Evaluation Of Microbiome On Chicken Necrotic Enteritis And Growth Performance, Mussie Abraha

Graduate Theses and Dissertations

Necrotic enteritis (NE) has re-emerged following restriction of antimicrobial usage and costs $6 billion every year worldwide. The primary objective of the studies was to evaluate prevention and treatment of NE using a microbiota metabolic product, secondary bile acid deoxycholic acid (DCA), in drinking water. Day-old birds were tagged and placed in floor pens. In experiments 1 and 2, the birds were infected with Eimeria maxima (Em) at d 18 and C. perfringens at d 23 and 24 and the birds were euthanized at d 26. In experiment 3, birds were infected with Eimeria at d 20 and C. perfringens …

Quantifying Greenhouse Gas Emissions And Ammonia Volatilization From Soil Amended With Excreta From Ruminants Fed Alternative Forage-Based Diets, Samuel Park

Graduate Theses and Dissertations

Forage-based ruminant diets supplemented with condensed tannins or polyphenolic-containing legumes may alter nitrogen (N) metabolism in the animal and reduce gas emissions from soil receiving excreta. The objective of the study was to determine if soil receiving urine or manure from sheep fed forage diets supplemented with condensed tannin or polyphenolic-containing legumes would decrease N gas emissions. Two field trials were conducted: in the first trial, sheep were fed alfalfa (Medicago sativa L.) silage diets supplemented with 0, 9, 18, or 27% sericea lespedeza (Lespedeza cuneate [Dumont de Courset] G. Don) (n = 4). In the second trial sheep were …

Associations Among Beef Cattle Genotypes, Neospora Caninum Infection, And Reproductive Performance, Ryan James Page

Graduate Theses and Dissertations

Reproductive performance is crucial for sustained financial success in the beef cattle industry. This dissertation includes a population study that quantified the incidence of Neospora caninum infections in the central region of the United States and tested its relationship with reproductive performance in beef cattle. Trial one of that study concluded that 6.9% of open, replacement heifers (n = 1306) tested seropositive. The second trial in that project found that 9.6% of the breeding age females (n = 500) tested were seropositive for Neospora caninum; and that state in which the cattle lived and age impacted (P < 0.05) infection rate. Breed composition, number of farm dogs on the ranch, and use of total mixed rations were not associated (P > 0.1) with seropositive …

Microbiota Characterization Of Poultry Processing Systems And Associated Microbiological Sampling Materials Collected At Commercial Processing Facilities, Jennifer A. Wages

Graduate Theses and Dissertations

The poultry industry and associated regulatory bodies use whole bird carcass (WBC) rinsates to evaluate different stages of broiler processing systems for the prevalence of food-borne pathogens, including Salmonella spp. and Campylobacter spp. Within industry and research groups, the same sample collections are enumerated to determine E. coli, Enterobacteriaceae (EB), and Aerobic Plate Count (APC) microorganisms. Analysis of these indicator microorganisms provides numerical data that can be used to demonstrate the effects of specific process control steps where low occurrences of target pathogens hinder the exclusive use of prevalence data. With the utilization of next generation sequencing (NGS), including analysis …

The Effects Of Phosphate On Larval Western Barred Tiger Salamanders (Ambystoma Mavortium), Lexy Polivanov, Dennis Ferraro

UCARE: Research Products

This study seeks examine the effects of elevated phosphate levels on the larval stage of the Western Barred Tiger Salamander (Ambystoma mavortium). Hypothesis: Additional phosphate in the water will cause the larval salamanders to have a slower metamorphosis rate than the control group with no additional phosphates. This hypothesis is based off of research that showed that additional nitrogen in the water caused a slower growth rate in the Western Barred Tiger Salamander (Ambystoma mavortium) (Griffis-Kyle, 2007).

The hypothesis was rejected. The dates the larvae morphed alternated between treatment and control. The treatment metamorphosis was not …

Bleaching Susceptibility Of Aquarium Corals Collected Across Northern Australia, Morgan S. Pratchett, Ciemon F. Caballes, Stephen J. Newman, Shaun Wilson, Vanessa Messmer, Deborah J. Pratchett

Fisheries Research Articles

There are a wide range of Scleractinian corals that are collected for the global reef aquarium market, often from non-reefal environments. The sustainability of coral harvesting is potentially threatened by increasing anthropogenic disturbances and climate change, though it is unknown to what extent many commonly harvested corals are susceptible to environmental change, or actually bleach during marine heatwaves. In this study, we experimentally tested the temperature sensitivity and bleaching susceptibility of six coral species (Homophyllia australis, Micromussa lordhowensis, Catalaphyllia jardinei, Trachyphyllia geoffroyi, Duncanopsammia axifuga, and Euphyllia glabrescens), which are important components of the …

Predation Efficiency And Prey Choice Of Estuarine Organisms Under Varying Anthropogenic Light Types And Intensities, Carmen Montalvo

HCNSO Student Theses and Dissertations

The coastlines of Florida are becoming highly urbanized, and the growing human population is affecting many mangrove and estuarine habitats. Exploring the predation efficiency and prey choice of estuarine organisms under varying anthropogenic light types and intensities could help determine anthropogenic effects. Mangrove habitats support both relatively large predators such as Blue Striped Grunt (Haemulon sciurus) and Gray Snapper (Lutjanus griseus), and a diversity of smaller taxa that occupy lower trophic levels, including Grass Shrimp (Palaemonetes paludosus) and Mosquitofish (Gambusia holbrooki). Understanding how predation (or predation evasion) efficiencies are affected by different …

What Roadkills Did We Miss In A Driving Survey? A Comparison Of Driving And Walking Surveys In Baldwin County, Georgia, Kori A. Ogletree, Alfred J. Mead

Georgia Journal of Science

Accurate estimates of vertebrate road mortalities are necessary prior to the consideration of mitigation measures by resource managers. Due to ease of implementation, driving surveys are more common than walking surveys. From February 2018 to February 2019, two survey methods, driving and walking, were used to monitor a 1.16 km section of Highway 212 in Baldwin County, Georgia. Roadkills were identified and monitored for persistence from sunrise to noon two days a week. Twenty-nine roadkills were recorded over the survey period: 48.3% mammals (14/29), 27.6% herpetofauna (8/29), and 24.1% birds (7/29). Forty-eight percent (14/29) of roadkills were missed by the …

Poor Maternal Nutrition During Gestation Alters Placental Igf-I, Igf-Ii, And Igfbp-3 Mrna Expression In Sheep, Caitlyn Splaine

Honors Scholar Theses

Insulin-like growth factors (IGF) modulate placental and fetal growth and development through nutrient sensing and endocrine signaling. We hypothesized that poor maternal nutrition during gestation would alter IGF-I, IGF binding protein (IGFBP)-2, and IGFBP-3 mRNA expression in the ovine placenta, but would not affect IGF-II mRNA expression. Pregnant ewes (n=57) were individually fed: 60% (restricted fed; RES), 100% (control fed; CON), or 140% (over fed; OVER) of National Research Council requirements for TDN starting at day 30±0.2 of gestation. Ewes were euthanized and cotyledon and caruncle samples were collected at days 45, 90, and 135 of gestation. Relative mRNA expression …

Evolutionary Selection Against Short Nucleotide Sequences In Viruses And Their Related Hosts, Yoram Zarai, Zohar Zafrir, Bunpote Siridechadilok, Amporn Suphatrakul, Modi Roopin, Justin G. Julander, Tamir Tuller

Animal, Dairy, and Veterinary Science Faculty Publications

Viruses are under constant evolutionary pressure to effectively interact with the host intracellular factors, while evading its immune system. Understanding how viruses co-evolve with their hosts is a fundamental topic in molecular evolution and may also aid in developing novel viral based applications such as vaccines, oncologic therapies, and anti-bacterial treatments. Here, based on a novel statistical framework and a large-scale genomic analysis of 2,625 viruses from all classes infecting 439 host organisms from all kingdoms of life, we identify short nucleotide sequences that are under-represented in the coding regions of viruses and their hosts. These sequences cannot be explained …

Impact Of Animal Programming On Human Attitudes Of Local Wildlife, Ashton Jerger

Undergraduate Honors Thesis Projects

Attitudes towards wildlife can have direct implications on peoples’ interest in conserving local habitats and their overall ecological choices. Attitudes are formed by multiple components of an individual’s life history. However, through interactive, educational experiences, there is a potential to change current attitudes. Animal programs are an example of interactive, educational experiences that provide individuals the opportunity to get up-close to animal ambassadors and participate in engaging conversations about them. An animal program assessment was conducted with the 2019 summer camps at the Ohio Wildlife Center to quantify the changes in peoples’ affiliation for local wildlife and their willingness to …

Environmental Factors' Effects On Eastern Gray Squirrel (Sciurus Carolinensis) Infant Populations And Health, Jenny Mcfarland

Undergraduate Honors Thesis Projects

Ecosystem factors, both biotic and abiotic, impact all animal species. Temperature, rainfall, daylight, windspeed, mast production, competition and predation are integral to the ecosystem and thus affect the survival and overall wellbeing of the population. Eastern gray squirrel (Sciurus carolinensis) infant intakes at Ohio Wildlife Center followed a pattern of more infants in the fall than in the spring, differing from the usual observation that more infants are born in the spring. Ecosystem factors were compared to monthly and annual intakes to see what influenced intake date, admittance condition and survivability rate of the Eastern gray squirrel infants. The results …

Inspecting Species And Freshness Of Fish Fillets Using Multimode Hyperspectral Imaging Techniques, Jianwei Qin, Fartash Vasefi, Rosalee S. Hellberg, Alireza Akhbardeh, Rachel B. Isaacs, Ayse Gamze Yilmaz, Chansong Hwang, Insuck Baek, Walter F. Schmidt, Moon S. Kim

Food Science Faculty Articles and Research

This study developed multimode hyperspectral imaging techniques to detect substitution and mislabeling of fish fillets. Line-scan hyperspectral images were collected from fish fillets in four modes, including reflectance in visible and nearinfrared (VNIR) region, fluorescence by 365 nm UV excitation, reflectance in short-wave infrared (SWIR) region, and Raman by 785 nm laser excitation. Fish fillets of six species (i.e., red snapper, vermilion snapper, Malabar snapper, summer flounder, white bass, and tilapia) were used for species differentiation and frozen-thawed red snapper fillets were used for freshness evaluation. A total of 24 machine learning classifiers were used for fish species and freshness …

Hers And His: Silk Glands Used In Egg Sac Construction By Female Spiders Potentially Repurposed By A 'Modern' Male Spider, Mark A. Townley, Danilo Harms

Biological Sciences

Cylindrical silk gland (CY) spigots distinguish a large clade of modern spiders, the CY spigot clade, which includes all entelegyne spiders and their closest relatives. Following a widespread paradigm, CYs and their spigots are only known to occur in female spiders and they produce silk used in the construction of egg sacs. Here we report the occurrence of a CY spigot or CY nubbin on each posterior median spinneret (PMS) in males (5th stadium and later) of the spider Australomimetus maculosus. Late juvenile males had a CY spigot on each PMS, whereas adult males either had a CY spigot or, …

The Effects Of Leaf Litter On Predation Cue Response In Gray Tree Frog Tadpoles, Hyla Versicolor, Dani Mccauley

Undergraduate Distinction Papers

Plant litter is an important resource for consumers, particularly in freshwater environments where it influences the development processes of larval amphibians. Leaf litter alters the physiochemical environment by lowering dissolved oxygen while increasing nitrogen, tannin, and phenolic acid levels. Many anuran species show plastic responses to the threat of predation. This is communicated through a kairomone when a tadpole is consumed, allowing surviving tadpoles to alter their behavior and morphology to evade predators. The purpose of this study was to analyze the interactive effects of leaf litter and predation on gray treefrog tadpoles (Hyla versicolor). The chemical output of the …

Outperformed: Exploration And Comparison Of The Tongue-And-Cheek Tragedies Of Women-Animal Relationships In Selected Short Stories By Samanta Schweblin And In Apichatpong Weerasethakul’S Film, Uncle Boonmee Who Can Recall His Past Lives, Sawnie Smith

Vernacular: New Connections in Language, Literature, & Culture

The unsettling short stories that comprise Samanta Schweblin’s 2008 collection Pájaros en la boca are textured and populated by the flesh of not only humans, but also the skins of species that belong to a wider zoological and mythical scope. Those creatures in Schweblin’s literary output who possess scales, feathers, and wings find themselves variously rubbing up against, crushed under, and orally engulfed by human dermis. This essay seeks to explore the charge of gender politics that courses through interactions between human women and (demi-) animals in two short stories from this collection: “El hombre sirena” and “Olingiris”—animal contact with …

The Potential Of Nanosilver As An Antibacterial Agent For Grouper Aquaculture, Zhen-Hao Liao, Chie-Fan Wu, Fan-Hua Nan

Journal of Marine Science and Technology–Taiwan

This study evaluated the efficacy of nanosilver in grouper aquaculture. The commercial nanosilver solution was trailed for antibacterial activity against Vibrio alginolyticus, one of the most serious threats for grouper survival. The in vitro studies showed that nanosilver possessed Minimum Inhibitory Concentration (MIC) value of 8 ppm, Minimum Bactericidal Concentration (MBC) value of 16 ppm and Zone of Inhibition (ZOI) of 14 mm (20 g silver loading). In addition to assessment of antibacterial activity in culture medium, it was also found that the dosage of nanosilver above 8 ppb were effective for growth inhibition of V. alginolyticus in seawater (103 …

Utah's Own Habitat Guidelines For Sage-Grouse, David K. Dahlgren, Michel Kohl, Eric Thacker, S. Nicole Frey, Terry Messmer

All Current Publications

Those living and working within western North America’s sagebrush landscapes have most likely been exposed to sage-grouse issues for many years now and may have felt anxiety concerning the potential impacts that could result from implementing conservation measures designed to help this iconic species persist. Society’s challenge to seek the delicate balance between the conservation of nature and the growth related to human endeavors exemplifies the need to use the best available science as we move forward. Representative information, especially at the landscape level related to sage-grouse, has been hard to come by. However, due to the vast amount of …

Identification And Characterization Of The Lactating Mouse Mammary Gland Citrullinome, Guangyuan Li, Coleman H. Young, Bryce Snow, Amanda C. Christensen, M. Kristen Demoruelle, Venkatesh V. Nemmara, Paul R. Thompson, Heather M. Rothfuss, Brian D. Cherrington

College of Science & Mathematics Departmental Research

Citrullination is a post-translational modification (PTM) in which positively charged peptidyl-arginine is converted into neutral peptidyl-citrulline by peptidylarginine deiminase (PAD or PADI) enzymes. The full protein citrullinome in many tissues is unknown. Herein, we used mass spectrometry and identified 107 citrullinated proteins in the lactation day 9 (L9) mouse mammary gland including histone H2A, α-tubulin, and β-casein. Given the importance of prolactin to lactation, we next tested if it stimulates PAD-catalyzed citrullination using mouse mammary epithelial CID-9 cells. Stimulation of CID-9 cells with 5 µg/mL prolactin for 10 min induced a 2-fold increase in histone H2A citrullination and a 4.5-fold …

Several Vegetation Characteristics Affect Reproductive Success Of Grassland Birds At A Restored, Warm-Season Grassland In Central Georgia, Kayla B. Allen

Biology Theses

Grassland birds are experiencing major population declines due to habitat loss and fire suppression throughout North America. Large-scale grassland restoration efforts are ongoing, but there is little data on breeding bird productivity on restored habitats, nor on the impact of specific vegetation characteristics on reproductive output. Since 2005, agriculture fields at Panola Mountain State Park, GA have been undergoing restoration to warm-season grasslands; however, up until now there has been no monitoring of nest success or productivity. The goals of this project are to 1) quantify reproductive success and 2) determine which vegetation characteristics are associated with reproductive success. From …

Genome-Wide Changes In Genetic Diversity In A Population Of Myotis Lucifugus Affected By White-Nose Syndrome, Thomas M. Lilley, Ian W. Wilson, Kenneth A. Field, Deeann Reeder, Megan E. Vodzak, Gregory G. Turner, Allen Kurta, Anna S. Blomberg, Samantha Hoff, Carl J. Herzog, Brent J. Sewall, Steve Paterson

Faculty Journal Articles

Novel pathogens can cause massive declines in populations, and even extirpation of hosts. But disease can also act as a selective pressure on survivors, driving the evolution of resistance or tolerance. Bat white-nose syndrome (WNS) is a rapidly spreading wildlife disease in North America. The fungus causing the disease invades skin tissues of hibernating bats, resulting in disruption of hibernation behavior, premature energy depletion, and subsequent death. We used whole-genome sequencing to investigate changes in allele frequencies within a population of Myotis lucifugus in eastern North America to search for genetic resistance to WNS. Our results show low FST values …