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Resolving Variability In Size Structure In An Individual-Based Model For The North Pacific Krill, Euphausia Pacifica, Roxanne Robertson

Cal Poly Humboldt theses and projects

Individual-based models (IBMs) have emerged as a powerful tool for ecological research and are particularly well suited to studies of plankton ecology. In this thesis, I develop an IBM for the North Pacific krill, Euphausia pacifica, with the goal of replicating observed variability in size-structure in the northern California Current Ecosystem. Krill, and E. pacifica in particular, are central to the structure and function of the California Current Ecosystem. Their response to environmental forcing translates climate variability to higher trophic levels and underpins broader ecosystem responses. Recent observations indicate environmental and climate-related shifts in E. pacifica size distributions, which …

Evaluation Of Population Structure, Age, Growth, And Mortality Of Blue Catfish And Flathead Catfish Within The Robert C. Byrd Pool Of The Ohio And Kanawha Rivers, Joseph Vincent Siegel

Graduate Theses, Dissertations, and Problem Reports (ETD)

The Ohio River is continuing to recover from a long history of anthropogenic impacts. Blue Catfish were considered locally extirpated from the West Virginia sections and have been reintroduced through fingerling stockings beginning in 2002. Flathead Catfish are naturally sustaining in the pool and combined with Blue Catfish provide two popular recreational fisheries. The Blue Catfish and Flathead Catfish studies shared similar objectives: (1) evaluating size structure, (2) estimating growth rates, and (3) estimating annual mortality. From 2017 to 2020, we collected catfish annually through low frequency electrofishing and trotline surveys at 10 fixed locations. Electrofishing catch rates for Blue …

Effect Of Fecal Egg Count Estimated Breeding Value On Antibody Production In Katahdin Lambs, Kelsey L. Bentley

Graduate Theses, Dissertations, and Problem Reports (ETD)

With current pressures to seek out genetic solutions to combat antimicrobial resistance, genetic resistance to the gastrointestinal nematode Haemonchus contortus may reduce need for prophylactic antibiotic use. The Katahdin breed has effectively utilized post-weaning fecal egg count estimated breeding value (PFEC EBV) to reduce parasitism within their flocks, but there still remains significant opportunity for selection within breed. In a previous study, Katahdin sheep sired by low PFEC sires had greater survivability to weaning than lambs sired by high PFEC rams and preweaning was caused by other diseases than parasitism. Those data lead to the hypothesis that selection for PFEC …

The Effects Of Genetic Differences In An Innate Immune Receptor On Immune Responses To Haemonchus Contortus In Sheep, Denzel Deshawn Middleton

Graduate Theses, Dissertations, and Problem Reports (ETD)

Little is known about differences observed in early immunological signaling events that result in cellular infiltration and Th2 cytokine production that mediate parasite expulsion. Parasite resistant St. Croix (STC) sheep have been used as model for full host protective immunity as they present the ability to respond to larval stages of H. contortus. RNA sequencing analysis of peripheral blood mononuclear cells (PBMC) stimulated with H. contortus larval antigen (HcLA) revealed significant upregulation in NLRP3 and its pathway component TLR4. Predicted protein structural software identified distinct differences in NLRP3 protein structure in STC and parasite susceptible Suffolk (SUF) sheep. NLRP3 …

Wildlife Forage Recovery Following Boreal Wildfire, Alexis Jorgensen, Jennifer Baltzer

Theses and Dissertations (Comprehensive)

Climate change is altering the boreal wildfire regime through increases in the extent and severity of burning and reductions in fire return intervals. These changes can alter the regeneration trajectory of canopy species and ground vegetation, with implications for wildlife habitat. There is some uncertainty about the timelines of when different animal species will use burned areas as their preferred forage taxa recover following fire, and how such recovery is mediated by environmental factors. Here, we aim to address these knowledge gaps through the following questions: 1) What are the main forage types consumed by boreal wildlife and how much …

Tsetse Blood-Meal Sources, Endosymbionts And Trypanosome-Associations In The Maasai Mara National Reserve, A Wildlife-Human-Livestock Interface, Edward Edmond Makhulu, Jandouwe Villinger, Vincent Owino Adunga, Maamun M. Jeneby, Edwin Murungi Kimathi, Enock Mararo, Joseph Wang’Ang’A Oundo, Ali Abdulahi Musa, Lillian Wambua

All Peer-Reviewed Publications

African trypanosomiasis (AT) is a neglected disease of both humans and animals caused by Trypanosoma parasites, which are transmitted by obligate hematophagous tsetse flies (Glossina spp.). Knowledge on tsetse fly vertebrate hosts and the influence of tsetse endo-symbionts on trypanosome presence, especially in wildlife-human-livestock interfaces, is limited. We identified tsetse species, their blood-meal sources, and correlations between endosymbionts and trypanosome presence in tsetse flies from the trypanosome-endemic Maasai Mara National Reserve (MMNR) in Kenya. Among 1167 tsetse flies (1136 Glossina pallidipes, 31 Glossina swynnertoni) collected from 10 sampling sites, 28 (2.4%) were positive by PCR for trypanosome DNA, most (17/28) …

Environmental Controls On The Spatial Distribution Of Greenfin Darters And Biodiversity In The Blue Ridge Mountains, Dri Tattersfield

CMC Senior Theses

Disproportionate concentrations of biodiversity in mountains worldwide suggest linkages between geologic processes and biodiversity that are not yet well understood. The Tennessee River Basin in the Blue Ridge Mountains of the southeastern U.S. is a global hotspot for freshwater fish biodiversity. To investigate drivers of biodiversity in the Tennessee River Basin, and explore links to geologic processes, I study the Greenfin Darter (Nothonotus chlorobranchius), a small fish endemic to the upper Tennessee River Basin. I use generalized linear models (GLMs) to evaluate the influence of topography, lithology, climate and land use on the distribution of the Greenfin Darter, …

Will There Be Changes In Sexually Differentiated Behaviors In Mice Manipulated For The Sry Gene As They Mature Into Adultood?, Subin Joo

CMC Senior Theses

Sexually differentiated behavior has been shown to be affected by both genes and hormones. The discovery of the SRY gene, which codes for the development of testes, lead to the development of the Four Core Genotypes model of mice, and the separation of sex chromosomes and its resulting gonadal hormones. Using the FCG model, this study aims to look at the development of sexually differentiated behavior in mice, and track how it changes throughout their life. FCG mice will be divided into individual and social housing, and repeated experiments carried out to test their reaction to both intact female and …

A Preliminary Study On The Small Population Paradigm And Nesting Biology Of Rose-Ringed Parakeets (Psittacula Krameri) In Gujar Khan, Pakistan, Muhammad Bilal, Muhammad Huzaifa Zahid, Khalid Mahmood, Abdullah Ibrahim, Ali Hasnain Mosvi, Amir Naseer, Sadia Munir

Journal of Bioresource Management

Rose-ringed parakeet (P. krameri) is commonly found native psittacid in Pakistan. It is most popular companion bird in Pakistan. It is an unprotected species as per The Punjab Wildlife Act, 1974. The objectives of the present study were to study its population paradigm and basic nesting biology in the Gujar Khan, Punjab, Pakistan. Previously, no studies were carried out to assess its live and vacant nest cavities, nesting site, nest height, cavity position on substrate, and potential roosts in the area. Moreover, this study also assesses the potential threats and factors in this area and conservation of the …

Fish Don't Litter In Your House: Is International Law The Solution To The Plastic Pollution Problem?, Taylor G. Keselica

Pace International Law Review

This article addresses the complex issue of plastic pollution—focusing on ocean plastics. Specifically, this article examines the ocean plastics problem, critiques current binding and non-binding international environmental law surrounding ocean plastics, hazardous wastes, and pollution, and proposes a more effective solution to the ocean plastics problem. Section I provides a basic history of the creation of plastics and discusses plastics as they are used today. Section II considers the concerns surrounding ocean plastics, focusing on impacts of plastic on marine ecosystems as well as human health effects. Section III, IV, and V discuss the ongoing attempts to address the ocean …

Variation In Personality Among Semi-Wild Myanmar Timber Elephants, Sateesh Venkatesh

Theses and Dissertations

This study examines two personality traits: exploration and neophobia, which could influence human-elephant conflicts. Thirty-one semi-wild elephants were tested over two trials using a custom novel puzzle tube containing three tasks and three rewards. Our studies show that elephants do vary significantly between individuals in both exploration and neophobia.

Ogre-Faced, Net-Casting Spiders Use Auditory Cues To Detect Airborne Prey, Jay A. Stafstrom, Gil Menda, Eya I. Nitzany, Eileen A. Hebets, Ronald R. Hoy

Eileen Hebets Publications

Prey-capture behavior among spiders varies greatly from passive entrapment in webs to running down prey items on foot. Somewhere in the middle are the ogre-faced, net-casting spiders (Deinopidae: Deinopis) that actively capture prey while being suspended within a frame web. Using a net held between their front four legs, these spiders lunge downward to ensnare prey from off the ground beneath them. This “forward strike” is sensorially mediated by a massive pair of hypersensitive, night-vision eyes. Deinopids can also intercept flying insects with a “backward strike,” a ballistically rapid, overhead back-twist, that seems not to rely on visual cues. Past …

Modeling Migratory Nongame Birds: A Plea For Data, George M. Linz

Human–Wildlife Interactions

The Bird Damage Management Conference held February 10–13, 2020 in Salt Lake City, Utah, USA provided a forum for professionals from across the United States to discuss and share management approaches, research strategies, policy, and messaging regarding the management of blackbirds (Icteridae), starlings (Sturnus vulgaris), corvids (Corvidae), and vultures (Cathartidae). Mathematical models were presented at the conference and subsequently discussed in a special issue of Human–Wildlife Interactions. Rapidly changing landscape variables point to the need for detailed systematic population monitoring programs with specific objectives. Nationwide periodic monitoring would provide data about changes not only in bird populations …

A New Cryptic Species Of Scorpiops Peters, 1861 (Scorpiones: Scorpiopidae) From The Northern Western Ghats, India, Shauri Sulakhe, Shubhankar Deshpande, Nikhil Dandekar, Makarand Ketkar, Anand Padhye, Deshabhushan Bastawade

Euscorpius

A new cryptic species of Scorpiops (Scorpiopidae) is described from northern Western Ghats of India with integrated taxonomic approach. Scorpiops telbaila sp. n. is closely related to S. tenuicauda and differs from all species of Scorpiops in morphological features and raw genetic divergence of 5.4-14.1 %.

Core Commitments For Field Trials Of Gene Drive Organisms, Kanya C. Long, Luke Alphey, George J. Annas, Cinnamon S. Bloss, Karl J. Campbell, Jackson Champer, Chun-Hong Chen, Amit Choudhary, George M. Church, James P. Collins, Kimberly L. Cooper, Jason A. Delborne, Owain R. Edwards, Claudia I. Emerson, Kevin Esvelt, Sam Weiss Evans, Robert M. Friedman, Valentino M. Gantz, Fred Gould, Sarah Hartley, Elizabeth Heitman, Janet Hemingway, Hirotaka Kanuka, Jennifer Kuzma, James V. Lavery, Yoosook Lee, Marce Lorenzen, Jeantine E. Lunshof, John M. Marshall, Philipp W. Messer, Craig Montell, Kenneth A. Oye, Megan J. Palmer, Philippos Aris Papathanos, Prasad N. Paradkar, Antoinette J. Piaggio, Jason L. Rasgon, Gordana Rašić, Larisa Rudenko, J. Royden Saah, Maxwell J. Scott, Jolene T. Sutton, Adam E, Vorsino, Omar S. Akbari

United States Department of Agriculture Wildlife Services: Staff Publications

We must ensure that trials are scientifically, politically, and socially robust, publicly accountable, and widely transparent.

Gene drive organisms (GDOs), whose genomes have been genetically engineered to spread a desired allele through a population, have the potential to transform the way societies address a wide range of daunting public health and environmental challenges. The development, testing, and release of GDOs, however, are complex and often controversial. A key challenge is to clarify the appropriate roles of developers and others actively engaged in work with GDOs in decision-making processes, and, in particular, how to establish partnerships with relevant authorities and other …

Line Of Sight: Simulated Aerial Avian Predators Can Reduce Problematic Bird Flyovers Of Airfields, William O'Shea, Neil E. Coughlan, Thomas C. Kelly, Neil Mitham, Jeremy Nicholson

Human–Wildlife Interactions

Collisions between birds and aircraft (bird strikes) are a serious threat to air safety and represent a substantial economic cost to the global aviation industry. In recent years, the frequency of wood pigeons (Columba palumbus) flying over active runways has increased at airports in Ireland. Here, we examine the effectiveness of imitation hawk-kites as a means of excluding wood pigeons from sensitive airfield locations. Over 2 years, during August and September, we conducted control (no kites deployed) and treatment trials (kites deployed) at Casement Aerodrome, an active airfield of approximately 320 ha in County Dublin, Ireland and on …

The Mayfly Newsletter, Donna Giberson

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

The Effect Of Holding Time Of Whole Mare Blood On Concentration Of Progesterone, Clarissa Menefee

Electronic Theses and Dissertations

The objective of this study was to evaluate if holding time had an effect on mare whole blood progesterone levels. This research was completed using 12 mares, with blood being collected on multiple cycles to get a total of 28 separate blood collections. At each collection 5 vials of blood were taken for different time treatments of 0, 12, 24, and 48 hours. The 0 hour was centrifuged within 30 mins of collection and the other 4 were refrigerated at 4℃ until the specific time treatment was finished. After they were centrifuged all the samples were stored in the freezer …

Understanding Free-Roaming Horse Conflicts With Wildlife In The Great Basin, S. Nicole Frey, Eric Thacker, Katlyn Uhart

All Current Publications

Horses and burros were introduced to North America in the 1600s with European missionaries and explorers. Over time, abandoned and released horses and burros formed herds and by the time European-American settlers began to explore North America in the 1700s, these free-roaming horses and burros had adapted to their habitat and been incorporated into Native American culture. By the mid-1900s, most Americans considered these horses as wild and symbols of freedom and beauty.

In 1971, Congress passed the Wild and Free-Roaming Horses and Burros Act (Public Law 73-482) to provide federal protection for free-roaming horses and burros (also known as …

Prevalence Of Snake Fungal Disease Caused By Ophidiomyces Ophiodiicola In East Texas, Alan Lizarraga

Biology Theses

Fungal pathogens and resultant disease are credited with the decline of many species across all branches of the tree of life. Fungal diseases such as Snake Fungal Disease (SFD), primarily caused by the fungus Ophidiomyces ophiodiicola (Oo), have been strongly associated with the cause of the decrease/disappearance of many snake populations in North America. To date SFD in the wild has been described as far southwest as central Louisiana. Due to similar conditions and the proximity of East Texas to central Louisiana, a survey of local snake populations provided crucial information about the spread and presence of this emerging pathogen. …

Classification Of Small Ruminant Lentivirus Subtype A2, Subgroups 1 And 2 Based On Whole Genome Comparisons And Complex Recombination Patterns, Aaron M. Dickey, Timothy P.L. Smith, Michael L. Clawson, Michael P. Heaton, Aspen M. Workman

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Background: Small ruminant lentiviruses (SRLVs) cause a multisystemic chronic wasting disease in sheep across much of the world. SRLV subtype A2 is prevalent in North America and further classified into multiple subgroups based on variation in the group antigens gene (gag) and envelope (env) genes. In sheep, the ovine transmembrane protein 154 (TMEM154) gene is associated with SRLV susceptibility. Ewes with at least one copy of TMEM154 encoding a fulllength protein with glutamate at position 35 (E35; haplotypes 2 and 3), are highly susceptible to SRLV infection while ewes with any combination of TMEM154 …

The Effect Of Concentrate Supplementation On Milk Production And Cow Traffic In Early And Late Lactation In A Pasture-Based Automatic Milking System, John Shortall, Cathriona Foley, Roy D. Sleator, Bernadette O'Brien

Department of Biological Sciences Publications

The objective of this experiment was to establish the effect of low-concentrate (LC) and high-concentrate (HC) supplementation in the early and late periods of lactation on milk production and cow traffic in a pasture-based automatic milking (AM) system. In total, 40 cows (10 primiparous and 30 multiparous) were randomly assigned to one of the two treatments. The experimental periods for the early and late lactation trials extended from 23 February to 12 April 2015 and 31 August to 18 October 2015, respectively (49 days in each trial period). The early lactation supplement levels were 2.3 and 4.4 kg/cow per day …

Blenny Territoriality At Oyster Landing, North Inlet Estuary, South Carolina: Seasonal Patterns And Ecological Factors, Sydney Davis, Juliana Harding

Honors Theses

Temperate oyster reef blennies use oyster shells that are still articulated as habitat year round. During the breeding season when water temperatures are > 18-20°C, many species of blenny males use the oyster valves as nesting sites. Male blennies exhibit territorial behavior when guarding their nesting sites and can interact differently with conspecific and transient species. Striped blenny (Chasmodes bosquianus) and freckled blenny (Hypsoblennius ionthas) behavior was described from April 2020 to August 2020 at Oyster Landing, North Inlet estuary, South Carolina to quantify typical blenny behavior, general presence or absence of residents, and potential environmental parameters …

Infaunal Bivalve Density And Richness In North Inlet Estuary, South Carolina: Seasonal Patterns And Ecological Factors, Valerie M. Knowles, Juliana Harding

Honors Theses

Estuarine bivalves recruit to benthic habitats after the larvae are in the planktonic stage. The observed infaunal bivalve density relates to larval supply from adult reproduction during warmer months as well as larval and juvenile mortality post-recruitment. The purpose of this research was to examine annual and seasonal patterns of infaunal bivalve density and richness in the context of habitat water temperature and salinity. Cores were collected biweekly from Bly Creek in North Inlet estuary between January 2019 and February 2020. Temperatures ranged from 9-30 ºC and salinity ranged from ~17-36 psu. Bivalves were sieved out of the cores, counted, …

Ocean Acidification And Fish Respiration: A Study On The Anatomical, Physiological, And Behavioral Adaptations Of Fishes And Their Ability To Cope With Decreasing Seawater Ph, Mark P. Rogers

All HCAS Student Capstones, Theses, and Dissertations

Abstract

Fish stocks across the globe are increasingly being relied upon to supply the ever-growing human population with high quality protein and other nutrients. In addition to fishing pressure, stressors brought on by climate changes, including ocean acidification and hypoxic conditions, have the potential for providing substantial negative impacts on the efficiency of fish respiration, internal acid-base balance, and energy budgets. To meaningfully integrate the potential impacts of ocean acidification on fishes into management practices it is important to study the anatomical, physiological, and behavioral adaptations that enable fish to cope with decreasing seawater pH and how those mechanisms might …

The Fear Of Reptiles And How To Change It, Maxwell Lyman

Honors Projects

Reptile fear is prominent across many cultures. Anti-reptilian attitudes can lead to anti-conservation attitudes towards reptiles. Person-animal interaction has been shown to decrease fear desensitization and increase positive attitudes towards "unpopular" animals. My project demonstrates the effectiveness of live animal presentation in dispelling negative attitudes of reptiles. However, due to the sample size of the project, further research is highly suggested.

Residency, Diel Movement, And Tidal Patterns Of Large Juvenile Bull Sharks (Carcharhinus Leucas) In Winyah Bay, Sc, Jeremy Lee Arnt

Electronic Theses and Dissertations

No abstract provided.

Supersize It! Developing A "Supercytoplast" Through Platelet Fusion, Taulbee B. Gunter

Animal Science Undergraduate Honors Theses

Stem cell research opens a wide range of possibilities from lab-grown tissues for medical purposes to cloned animals for livestock production. The issue with one of the most popular forms of cell recombination into a stem cell, known as somatic cell nuclear transfer (SCNT), is that it requires an oocyte. The requirement of an oocyte is often the host of public scrutiny for its economic and ethical issues. Platelets may offer a less expensive and more accessible alternative to oocytes as sources of naturally enucleated cells. Thus, the objective of this explorative research project is to isolate and fuse platelets …

The Nebraska Bird Review, Volume 88 December 2020 Number 4

Nebraska Bird Review

Fall Field Report, August - November 2020, by W. Ross Silcock …13.8

History of the Seward - Branched Oak Christmas Bird Count, 1993-2020, by Joseph Gubanyi …162

Index to Volume 88 … 173

Subscription and Organization Information …187

Fall Field Report, August-November 2020, W. Ross Silcock

Nebraska Bird Review

Two issues were of concern this fall, and both appeared to have consequences or at least similarities in Nebraska. A major die-off in New Mexico made national news: https://www.aba.org/the-data-behind-mysterious-bird-deaths-in-new-mexico/. On Sep 9, 2020, the temperature dropped from 96°F to 40°F in the Albuquerque area, a record low, winds reached 70 mph, and several inches of snow fell, killing large numbers of birds directly. Over the next few days, hundreds more dead birds were picked up. Some have linked this high mortality to birds displaced from the mountains due to fire and unfortunately being caught in the severe weather. While fire …