Digital Commons Network^™

A Large-Scale Experiment Finds No Evidence That A Seismic Survey Impacts A Demersal Fish Fauna, Mark G. Meekan, Conrad W. Speed, Robert D. Mccauley, Rebecca Fisher, Matthew J. Birt, Leanne M. Currey-Randall, Jayson M. Semmens, Stephen J. Newman, Katherine Cure, Marcus Stowar, Brigit Vaughan, Miles J G Parsons

Fisheries Research Articles

Seismic surveys are used to locate oil and gas reserves below the seabed and can be a major source of noise in marine environments. Their effects on commercial fisheries are a subject of debate, with experimental studies often producing results that are difficult to interpret. We overcame these issues in a large-scale experiment that quantified the impacts of exposure to a commercial seismic source on an assemblage of tropical demersal fishes targeted by commercial fisheries on the North West Shelf of Western Australia. We show that there were no short-term (days) or long-term (months) effects of exposure on the composition, …

Alteration Of The Canine Metabolome After A 3-Week Supplementation Of Cannabidiol (Cbd) Containing Treats: An Exploratory Study Of Healthy Animals, Elizabeth M. Morris, Susanna E. Kitts-Morgan, Dawn M. Spangler, Ibukun M. Ogunade, Kyle R. Mcleod, David L. Harmon

Animal and Food Sciences Faculty Publications

Despite the increased interest and widespread use of cannabidiol (CBD) in humans and companion animals, much remains to be learned about its effects on health and physiology. Metabolomics is a useful tool to evaluate changes in the health status of animals and to analyze metabolic alterations caused by diet, disease, or other factors. Thus, the purpose of this investigation was to evaluate the impact of CBD supplementation on the canine plasma metabolome. Sixteen dogs (18.2 ± 3.4 kg BW) were utilized in a completely randomized design with treatments consisting of control and 4.5 mg CBD/kg BW/d. After 21 d of …

Self-Injurious Behavior In A Captive, Malimprinted Coragyps Atratus, Brittany Swartout

The Pegasus Review: UCF Undergraduate Research Journal

Lurch is a Coragyps atratus who was raised in captivity and imprinted on humans. He was an education animal at the Silver Springs Zoo until its closure. Lurch was moved to the Central Florida Zoo and has been feather picking and self-mutilating since then. Self-injury is not well documented in raptors and few treatments have been explored. It is often caused by stress of some sort and is not seen in the wild. These observations were conducted in order to observe the environmental factors that influenced these behaviors in Lurch. In an attempt to curb his feather picking, Lurch was …

Temporal Trends And Drivers Of Mountain Lion Depredation In California, Usa, Justin A. Dellinger, Daniel K. Macon, Jaime L. Rudd, Deana L. Clifford, Steven G. Torres

Human–Wildlife Interactions

Increasing human populations and expanding development across the globe necessitate continual progress in understanding and mitigating human–wildlife conflict. California, USA has the largest human population and at least half of the state is suitable mountain lion (Puma concolor) habitat. The juxtaposition of high human abundance within and adjacent to mountain lion habitat make California relevant for understanding human–large carnivore conflict. We compiled 7,719 confirmed incidents of mountain lions depredating domestic animals over a 48-year period (1972–2019) to examine temporal trends in mountain lion depredations as well as factors influencing annual depredation rates at the county level. Linear regressions …

The Effects Of Climate And Demographic History In Shaping Genomic Variation Across Populations Of The Desert Horned Lizard (Phrynosoma Platyrhinos), Keaka Farleigh, Sarah A. Vladimirova, Christopher Blair, Jason T. Bracken, Nazila Koochekian, Drew R. Schield, Daren C. Card, Nicholas Finger, Jonathan Henault, Adam D. Leaché, Todd A. Castoe, Tereza Jezkova

Publications and Research

Species often experience spatial environmental heterogeneity across their range, and populations may exhibit signatures of adaptation to local environmental characteristics. Other population genetic processes, such as migration and genetic drift, can impede the effects of local adaptation. Genetic drift in particular can have a pronounced effect on population genetic structure during large-scale geographic expansions, where a series of founder effects leads to decreases in genetic variation in the direction of the expansion. Here, we explore the genetic diversity of a desert lizard that occupies a wide range of environmental conditions and that has experienced post-glacial expansion northwards along two colonization …

Fisheries Food Webs: Quantifying Habitat-Use, Trophic Structure, And Energetic Pathways In Coastal Tanzania, Mario Fernando Hernandez

LSU Doctoral Dissertations

Commercial and recreational fisheries are a valuable resource to millions of people around the world. Developing countries are particularly dependent on the revenue provided by locally harvested fish with total exports from these nations valued at $80 billion USD. For Tanzania, fisheries provide not only a source of revenue but an important source of protein with an estimated 25 to 30kg of fish consumed per person every year. There is no doubt that high fisheries production is critical to the well-being of millions of livelihoods along the Tanzanian coast. An important but poorly understood driver of fisheries production is the …

Distilling Professional Opinion To Gauge Vulnerability Of Guam Avifauna To Brown Treesnake Predation, Robert M. Mcelderry, Eben H. Paxton, Andre V. Nguyen, Shane R. Siers

United States Department of Agriculture Wildlife Services: Staff Publications

The avifauna of Guam was devastated by the introduction of the Brown Treesnake, and the restoration of native birds would need to address the problem with eradication or suppression of BTS. With eradication of the snake unlikely in the near term, and suppression capabilities limited to specific finite areas, key information for reintroductions is how low BTS abundance will likely need to be for each bird species to be re-established based on their vulnerability to BTS predation. Here, we estimate vulnerability, which can no longer be measured directly, so biologists who are familiar with one or more of seven Guam …

Effects Of Salinity On Eastern Oysters: Locating Lower-Salinity Tolerant Populations And Defining Resource Zones Suitable To Restoration, Fisheries, And Aquaculture., Lauren Swam

LSU Master's Theses

Eastern oysters (Crassostrea virginica) provide valuable ecosystem services and support a productive commercial industry in the northern Gulf of Mexico. Declining abundance from water quality changes and other factors drives development of management and restoration strategies focused on a comprehensive, metapopulation approach. Identifying oyster resource zones based on water quality combined with selective breeding of oysters adapted to specific conditions provides strategies to support aquaculture development and ensure resilient oyster populations and high production. Using 2015-2019 satellite-derived continuous salinity and temperature data for coastal Louisiana, this work created maps defining oyster resource zones supportive of (1) broodstock sanctuary …

The Mayfly Newsletter, Donna Giberson

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

A Behavioral Study Of Chacoan Peccaries (Catagonis Wagneri) In A Zoo Environment, Desdemona Kurowski

The Pegasus Review: UCF Undergraduate Research Journal

Found in the highly specialized area of the Gran Chaco, the Chacoan peccary (Catagonis wagneri) is an endangered animal threatened by industrial agriculture. In an attempt to save this species, three C. wagneri were brought to Central Florida Zoo where their health is monitored with great care in an attempt to possibly breed them in the future. While taking care of the other hooved animals, zookeepers are not able to give the peccaries their uninterrupted attention and have turned to help from the University of Central Florida to closely track if their behavior is indicative of a healthy, properly enriched …

Habitat Use And Morphology Of Birds In "Intact" Amazonia Under Changing Climate, Vitek Jirinec

LSU Doctoral Dissertations

Neotropical forests contain the core of global avian diversity. Of these, the Amazon rainforest is the largest, but ~20% has already been lost to deforestation, inspiring research into the effects of clearing and fragmentation on forest birds. These studies have consistently shown that insectivorous birds that forage on or near the ground are the most sensitive species to forest disturbance. As a preamble to our study, we synthesized bird capture data collected over 40 years within continuous forest far from human disturbance. Remarkably, we found that terrestrial and near-ground insectivores have shown substantial abundance declines even within primary forest. The …

The Effect Of Freeze-Thaw Events On Dna Integrity In The Gray Treefrog (Hyla Versicolor), Georgia Ficarra

Masters Theses & Specialist Projects

Freeze-tolerant gray treefrogs survive winter by producing natural cryoprotectants and accommodating ice formation within extracellular spaces. While frozen, gray treefrogs endure hyperglycemia, dehydration, and anoxia due to the halt of all bodily functions. Upon thawing, the frogs’ anoxic cells receive a rapid influx of oxygen, which can cause oxidative damage to vital macromolecules including DNA. Previous studies have suggested freeze-tolerant frogs avoid oxidative damage after freeze-thaw events by elevating antioxidant activity, but recent work has shown upregulated DNA repair encoding genes in post-freeze frogs. The objective of this thesis is to assess the cellular costs of freezing by measuring oxidative …

The Usda-Ars Ag100pest Initiative: High-Quality Genome Assemblies For Agricultural Pest Arthropod Research, Anna K. Childers, Scott M. Geib, Sheina B. Sim, Monica F. Poelchau, Brad S. Coates, Tyler J. Simmonds, Erin D. Scully, Timothy P. L. Smith, Christopher P. Childers, Renee L. Corpuz, Kevin Hackett, Brian Scheffler

Roman L. Hruska U.S. Meat Animal Research Center: Reports

The phylum Arthropoda includes species crucial for ecosystem stability, soil health, crop production, and others that present obstacles to crop and animal agriculture. The United States Department of Agriculture’s Agricultural Research Service initiated the Ag100Pest Initiative to generate reference genome assemblies of arthropods that are (or may become) pests to agricultural production and global food security. We describe the project goals, process, status, and future. The first three years of the project were focused on species selection, specimen collection, and the construction of lab and bioinformatics pipelines for the efficient production of assemblies at scale. Contig-level assemblies of 47 species …

Wpa News 115 (2021), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Summer 2021), number 115

Published by the World Pheasant Association

Examination Of Exhaustion In Larval Pacific Lamprey (Entosphenus Tridentatus) Through Variations Of Temperature, Flow, And Cover, Jessica Falcon

University Honors Theses

Pacific lampreys (Entosphenus tridentatus) are culturally and ecologically valuable throughout the western coast of North America. The larval (ammocoete) stage of the Pacific lamprey spends three to eight years burrowed in the sediment as a filter feeder, and is an essential contributor to many of the Northwest’s freshwater ecosystems. Larval lamprey may be vulnerable to warming waters caused by climate change as well as seasonal dredging and salvaging events that dislodge lamprey from sediment, as they prefer cooler water and are relatively poor swimmers in comparison to other fish such as salmon. In this study, we observed how …

Hidden Diversity Of Madagascan Freshwater Crabs (Brachyura: Potamoidea) Revealed By Morphological And Molecular Studies, Ellen Leever

All NMU Master's Theses

This study focuses on the freshwater crab fauna of the island of Madagascar. Relatively little is known about the species diversity of the island’s freshwater crabs and their phylogenetic relationships. Chapter 1 is based on a newly published molecular phylogeny that used the highest taxonomic sampling to date, including almost all of the island’s known freshwater crab genera and species. The phylogeny revealed a significant number of unidentified specimens that belong to several new lineages that potentially represent as many as 4 new genera and 10 new species. Chapters 2 and 3 focus on the taxonomic revision of the genus …

Investigating Larval Spillover From Oyster Aquaculture Through Geospatial Habitat Suitability Index Modeling: A Damariscotta River Estuary Case Study, Daniel F. Delago

All Theses And Dissertations

The eastern oyster (Crassostrea virginica) supports the ecological function of estuarine ecosystems by creating biogenic reef habitat (Purchon, 2013), and positively influencing coastal biogeochemistry in intertidal, and subtidal environments (Humphries et al., 2016; Ray and Fulweiler, 2020). As anthropogenic impacts continue to influence the health of marine environments globally (Halpern et al., 2008), oyster reef restoration is gaining increased attention as a means of maintaining the function of estuarine systems (Beck et al, 2011). Shellfish aquaculture has gained increased attention, contributing 21% of all aquaculture production globally (FAO 2020). Shellfish aquaculture provides a suite of social-ecological benefits while …

Adding Value Through Sustainability: Incentivizing An Ecosystem Approach To Oyster Aquaculture In Maine, Samuel Feldman

All Theses And Dissertations

This study identified oyster farming practices that have the potential to increase the sustainability of Maine’s oyster industry while increasing its value. Practices aligned with the principles of the ecosystem approach to aquaculture were gleaned from semi-structured interviews and surveys of oyster farmers and their buyers. Themes from interview transcripts were developed using thematic analysis. Survey data was used to triangulate interview transcript data. As a result, sustainable oyster farming practices were identified that had direct and indirect connections to the value of Maine’s oysters. Practices with direct connections to increased oyster value included conducting and advertising actions of increased …

Range-Wide Declines Of Northern Spotted Owl Populations In The Pacific Northwest: A Meta-Analysis, Alan B. Franklin, Katie M. Dugger, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven H. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Jesse Burgher, Kenneth P. Burnham, Peter C. Carlson, Tara Chestnut, Mary M. Conner, Krista E. Dilione, Eric D. Forsman, Elizabeth M. Glenn, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Julianna M. Jenkins, William L. Kendall, David W. Lamphear, Christopher Mccafferty, Trent L. Mcdonald, Janice A. Reid, Jeremy T. Rockweit, David C. Simon, Stan G. Sovern, James K. Swingle, Heather Wise

United States Department of Agriculture Wildlife Services: Staff Publications

The northern spotted owl (Strix occidentalis caurina) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls (Strix varia), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted …

Determination Of Freedom-From-Rabies For Small Indian Mongoose Populations In The United States Virgin Islands, 2019–2020, A. Springer Browne, Hannah M. Cranford, Clint N. Morgan, James A. Ellison, Are Berentsen, Nicholas Wiese, Alexandra Medley, John Rossow, Leanne Jankelunas, Alan S. Mckinley, Claudia D. Lombard, Nicole F. Angeli, Thomas Kelley, Jennifer Valiulus, Bethany Bradford, Valicia J. Burke-France, Cosme J. Harrison, Irene Guendel, Marissa Taylor, Gerard L. Blanchard, Jeffrey B. Doty, David J. Worthington, David Horner, Keith R. Garcia, Joseph Roth, Brett R. Ellis, Kristine M. Bisgard, Ryan Wallace, Esther M. Ellis

United States Department of Agriculture Wildlife Services: Staff Publications

Mongooses, a nonnative species, are a known reservoir of rabies virus in the Caribbean region. A cross-sectional study of mongooses at 41 field sites on the US Virgin Islands of St. Croix, St. John, and St. Thomas captured 312 mongooses (32% capture rate). We determined the absence of rabies virus by antigen testing and rabies virus exposure by antibody testing in mongoose populations on all three islands. USVI is the first Caribbean state to determine freedom-from-rabies for its mongoose populations with a scientifically-led robust cross-sectional study. Ongoing surveillance activities will determine if other domestic and wildlife populations in USVI are …

Testing A Bite-Shortened Hook To Minimize Fish Handling In A Recreational Fishery, Holden E. Harris, Brian K. Whalen, Andrew G. Gude, Michael S. Allen

United States Department of Agriculture Wildlife Services: Staff Publications

Discard mortality can make fishing unsustainable, even in catch-and-release or highly regulated fisheries. However, fishing practices and gears that minimize hook injury, handling, and air exposure can considerably improve fitness and survival in released fish. This study tested whether modified hooks could allow anglers to successfully land and then release fish in the water and without handling. Standard, barbless, and bite-shortened hooks were used to catch Spotted Seatrout Cynoscion nebulosus (n > 75 per hook type), and logistic models were used to assess the differences in landing success and hook self-release success by hook type and categorical fish size. Average landing …

Landscape Of Stress: Tree Mortality Influences Physiological Stress And Survival In A Native Mesocarnivore, Jennifer R. Kordosky, Eric M. Gese, Craig M. Thompson, Patricia A. Terletzky, Lorin A. Neuman-Lee, Jon D. Schneiderman, Kathryn L. Purcell, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Climate change and anthropogenic modifications to the landscape can have both positive and negative effects on an animal. Linking landscape change to physiological stress and fitness of an animal is a fundamental tenet to be examined in applied ecology. Cortisol is a glucocorticoid hormone that can be used to indicate an animal’s physiological stress response. In the Sierra Nevada Mountains of California, fishers (Pekania pennanti) are a threatened mesocarnivore that have been subjected to rapid landscape changes due to anthropogenic modifications and tree mortality related to a 4-year drought. We measured cortisol concentrations in the hair of 64 …

Risks Of Introduction And Economic Consequences Associated With African Swine Fever, Classical Swine Fever And Foot-And-Mouth Disease: A Review Of The Literature, Vienna Brown, Ryan S. Miller, Sophie C. Mckee, Karina H. Ernst, Nicole M. Didero, Rachel M. Maison, Meredith J. Grady, Stephanie A. Shwiff

United States Department of Agriculture Wildlife Services: Staff Publications

African swine fever (ASF), classical swine fever (CSF) and foot-and-mouth disease (FMD) are considered to be three of the most detrimental animal diseases and are currently foreign to the U.S. Emerging and re-emerging pathogens can have tremendous impacts in terms of livestock morbidity and mortality events, production losses, forced trade restrictions, and costs associated with treatment and control. The United States is the world's top producer of beef for domestic and export use and the world's third-largest producer and consumer of pork and pork products; it has also recently been either the world's largest or second largest exporter of pork …

Economic Losses Of Catfish To Avian Predation: A Case Report, Ganesh Kumar, Shraddha Hegde, David Wise, Charles Mischke, Brian Dorr

United States Department of Agriculture Wildlife Services: Staff Publications

Avian predation in catfish aquaculture has been a persistent issue throughout the history of the industry, and as production has expanded predation from piscivorous birds has intensified. Catfish ponds in the Mississippi River delta (in the Mississippi migratory flyway) provide a constant and readily accessible supply of forage for birds. Intensive foraging by fish-eating birds has led to a specific regulatory policy and numerous on-farm and regional management efforts. However, in 2016, legal challenges lead to recision of some federal policies and uncertainty as to allowable management, resulting in limitations on bird depredation. Estimating the extent of fish losses to …

Enhancement Of Dry-Aged Beef Quality By Dietary Supplementation Of High Levels Of Vitamin E, David Manuel Velazco Marroquin

Department of Animal Science: Dissertations, Theses, and Student Research

Crossbred cattle (n = 150; 10/pen) were grain-finished with the dietary addition of 2,200 international units of vitamin E (α-tocopherol) per head per day for 100 days. One low-Choice carcass (n = 12) was selected, and strip loins were collected. Low Choice control carcasses (n = 12) were randomly selected from commercial, fed-cattle production to serve as controls. Strip loins were randomly assigned to wet or dry aging for 42 days. On day 42, control dry-aged and control wet-aged loins had the highest TBARS values and vitamin E wet and dry-aged loins had lower TBARS values ( …

The Effect Of Heat Stress And Beta-Adrenergic Agonists On Fatty Acid Mobilization And Their Individual And Interacting Impact On The Adipose Transcriptome Of Ruminant Livestock, Rachel R. Reith

Department of Animal Science: Dissertations, Theses, and Student Research

Heat stress reduces livestock efficiency, induces inflammation, and alters adipose tissue metabolism through stress-induced epinephrine acting on beta-adrenoreceptors (β-AR). Supplementation of beta-adrenergic agonists (β-AA) improve livestock growth and carcass traits, also by acting on β-AR located in skeletal muscle and adipose tissue. The binding of β-AR in adipose tissue results in changes in adipose tissue metabolism including increased lipolysis and decreased fatty acid synthesis. Due to their similar effects on stress response pathways, the possible interaction of heat stress and β-AA could negatively impact animal well-being. The purpose of the first study was to understand how ractopamine (RAC), a beta-one …

The Conservation Status Of The World’S Freshwater Molluscs, M. Böhm, N. I. Dewhurst-Richman, M. Seddon, C. Albrecht, D. Allen, A. E. Bogan, K. Cummings, G. Darrigran, W. Darwall, Kathryn E. Perez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

With the biodiversity crisis continuing unchecked, we need to establish levels and drivers of extinction risk, and reassessments over time, to effectively allocate conservation resources and track progress towards global conservation targets. Given that threat appears particularly high in freshwaters, we assessed the extinction risk of 1428 randomly selected freshwater molluscs using the IUCN Red List Categories and Criteria, as part of the Sampled Red List Index project. We show that close to one-third of species in our sample are estimated to be threatened with extinction, with highest levels of threat in the Nearctic, Palearctic and Australasia and among gastropods. …

Directed Genome Evolution To Identify Genes For Macrophage Survival By Staphylococcus Agnetis, Sonali Lakshika Anne Lenaduwe Lokuge

Graduate Theses and Dissertations

Bacterial Chondronecrosis with Osteomyelitis (BCO) is a debilitating infection that negatively impacts animal welfare and costs the broiler industry billions of dollars annually. We have previously isolated Staphylococcus agnetis 908 from BCO samples obtained from broilers at the University of Arkansas research farm. This isolate can induce BCO lameness at greater than 50% in broilers exposed to the pathogen in drinking water. We found that S. agnetis 908 is capable of surviving and escaping macrophages compared to a closely related cattle isolate,1379. Through Directed Genome Evolution (DGE) we identified that this difference is at least partially associated with an alanine …

Characterization Of Iron-Sulfur Cluster Biogenesis In Methanogenic Archaea, Thomas Modlin Deere

Graduate Theses and Dissertations

Iron-sulfur (Fe-S) clusters are among the oldest cofactors on the planet, used by proteins in almost all forms of life on Earth to carry out processes ranging from energy transfer to DNA replication. Among the organisms believed to use these Fe-S proteins more extensively than almost any others are the methanogens, an ancient lineage of archaeal microbes that produce methane as a required product of their metabolism. Methane, the primary component of commercial natural gas, is both a potent greenhouse gas and an important fossil fuel. It can also be renewably produced as a biofuel. Biogenic methane is almost entirely …

Nanomaterial-Based Biosensors For Detection Of Salmonella Typhimurium And Avian Influenza Virus H5n1 In Poultry, Xinge Xi

Graduate Theses and Dissertations

This research focused on developing biosensing method and biosensing device for rapid detection of pathogens in poultry: Salmonella Typhimurium and avian influenza virus H5N1. The first part of the dissertation reports an original research on the development of a portable biosensing device for Salmonella detection. The device was designed and constructed based on a previously developed optical biosensing method, using immuno-magnetic nanoparticles to specifically capture target bacteria, and immuno-quantum dot beads to label the target bacteria for fluorescence detection. All the actions of sample mixing, magnetic separation, and fluorescence detection were controlled automatically in a disposable microfluidic chip in the …