Digital Commons Network^™

Effects Of Forest Reclamation And Landscape Features On Avian Occupancy, Species Richness, And Abundance In Appalachia, Rebecca N. Davenport

Theses and Dissertations--Forestry and Natural Resources

The Forestry Reclamation Approach (FRA) is a recently developed coal mining reclamation method that emphasizes best management practices in forestry, such as the planting of native trees and shrubs. Although the FRA is expected to benefit wildlife, no studies have empirically examined the effects of the FRA on avian species. My study aimed to identify which reclamation approaches and/or landscape features promote breeding songbirds, particularly mature forest avian guilds and species of conservation need. I conducted point count surveys in the Appalachian Mountains of eastern West Virginia and assessed differences in avian occupancy, species richness, and species abundance between four …

Chemical Immobilization Of Helicopter-Captured Elk (Cervus Canadensis) And Survival Of Elk Calves In Southeastern Kentucky, Kathleen E. Williams

Theses and Dissertations--Forestry and Natural Resources

Safe and effective chemical immobilization is critical to minimize stress and risk of injury when capturing free-ranging, wild ungulates. Many traditionally favored high potency opioids have been phased out or become unavailable because of increased regulations, leading to the development of two pre-mixed combination drugs, butorphanol-azaperone-medetomidine (BAM) and nalbuphine-medetomidine-azaperone (NalMed-A). Both drugs have been used to chemically immobilize ungulates, but their efficacy has not been documented in elk captured and transported via helicopter. During 2020 – 2022, we chemically immobilized helicopter-captured female elk (Cervus canadensis) with a single IM-injection of BAM (n = 41) or NalMed-A (n = …

Evaluation Of Autonomous Recording Unit Performance In Detecting Black-Billed Cuckoos, Jenna L. Asnault

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Black-billed Cuckoos (Coccyzus erythropthalmus) are classified as a species of concern in Montana and have declined due to habitat loss and fragmentation. Cuckoos are challenging to study, as they do not move or call frequently in the presence of people. This makes researching and managing these birds difficult. Autonomous acoustic survey methods offer the potential to be more effective than traditional avian survey methods. Autonomous recording units (ARUs) are small, programmable, relatively inexpensive acoustic detectors, and have been used in several other studies. Cuckoos, however, nest and perch in dense riparian vegetation, potentially limiting the detection capabilities of …

[Snakehead (Channa Marulius)]Neurocranium, Sam Gorman, Jessica Rutenis, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Snakehead Neurocranium

Nutritive Comparison Of Ruminant Feed, Integrating Crab And Lobster Meal, Kelsi L. Devolve

Honors Theses and Capstones

In attempts to increase livestock production and decrease waste products from the seafood industry, crab meal and lobster meal were tested as a potential cattle feed ingredient. Jonah crab waste, Atlantic Red crab waste, soybean meal, and blood meal were collected from various vendors and utilized in an in vitro study, an in situ study, and a nitrogen analyzer to determine crude protein in each feed. After allowing the samples to sit in a DAISY incubator for 48 h, mimicking a rumen environment, degradability for the soybean meal, blood meal, lobster meal, and crab meal were 100.13%, 76.36%, 43.77%, and …

The Anatomy And Phylogeny Of A New Large Plioplatecarpine Mosasaur From The Campanian Bearpaw Shale Of Montana (Usa), Richard A. Carr

Master's Theses or Doctor of Nursing Practice

In 2018, a large and associated plioplatecarpine mosasaur skull, pectoral girdle, and rib cage, whose total body length may have exceeded five meters, was uncovered in the Late Campanian Bearpaw Shale of Northeast Montana (USA). Phylogenetic analysis of this specimen, MOR 10855, recovers this individual as a basal member of the genus Plioplatecarpus. This specimen, is unique in that it is estimated to be nearly twice the size of any of the other species of Plioplatecarpus found in the Western Interior Seaway during this part of the Cretaceous. While the included phylogenetic study suggests MOR 10855 represents a new …

Evaluation Of Precision Ingredient Inclusion On Production Efficiency Responses In Finishing Beef Cattle, Santana R. Hanson

Electronic Theses and Dissertations

Two randomized complete block design feedlot experiments were conducted over the course of two years. These experiments were conducted to investigate the effects of 1) evaluate the observed-to-expected ratio for ingredient inclusion using no commodity inclusion assistance technology or using commodity inclusion assistance technology; and 2) evaluate the influence that varying degrees (highly variable at random or 0.454 kg asfed tolerance for each ingredient) of accuracy on ingredient inclusion have on growth performance, carcass traits, efficiency of dietary NE utilization, and ingredient inventory management in finishing beef cattle. Experiment 1 used single source Black Angus heifers (n = 60; initial …

Potential Repercussions Of Offshore Wind Energy Development In The Northeast United States For The Atlantic Surfclam Survey And Population Assessment, Sarah Borsetti, Daphne M. Munroe, Andrew M. Scheld, Eric N. Powell, John M. Klinck, Eileen E. Hofmann

CCPO Publications

The Atlantic surfclam Spisula solidissima fishery, which spans the U.S. Northeast continental shelf, is among the most exposed to offshore wind energy development impacts because of the overlap of fishing grounds with wind energy lease areas, the hydraulic dredges used by the fishing vessels, and the location of vessel home ports relative to the fishing grounds. The Atlantic surfclam federal assessment survey is conducted using a commercial fishing vessel in locations that overlap with the offshore wind energy development. Once wind energy turbines, cables, and scour protection are installed, survey operations within wind energy lease areas may be curtailed or …

Integrating Human Dimensions In Decadal-Scale Prediction For Marine Social Ecological Systems: Lighting The Grey Zone, Jess Melbourne-Thomas, Desiree Tommasi, Marion Gehlen, Eugene J. Murphy, Jennifer Beckensteiner, Francisco Bravo, Tyler D. Eddy, Mibu Fischer, Elizabeth Fulton, Mayya Gogina, Eileen Hofmann, Maya Ito, Sara Mynott, Kelly Ortega-Cisneros, Anna N. Osiecka, Mark R. Payne, Romeo Saldívar-Lucio, Kim J.N. Scherrer

CCPO Publications

The dynamics of marine systems at decadal scales are notoriously hard to predict-hence references to this timescale as the "grey zone" for ocean prediction. Nevertheless, decadal-scale prediction is a rapidly developing field with an increasing number of applications to help guide ocean stewardship and sustainable use of marine environments. Such predictions can provide industry and managers with information more suited to support planning and management over strategic timeframes, as compared to seasonal forecasts or long-term (century-scale) predictions. The most significant advances in capability for decadal-scale prediction over recent years have been for ocean physics and biogeochemistry, with some notable advances …

Seasonal Habitat Preference And Foraging Behaviour Of Post-Moult Weddell Seals In The Western Ross Sea, Kimberly T. Goetz, Michael S. Dinniman, Luis A. Hückstädt, Patrick W. Robinson, Michelle R. Shero, Jennifer M. Burns, Eileen E. Hofmann, Sharon E. Stammerjohn, Elliott L. Hazen, David G. Ainley, Daniel P. Costa

CCPO Publications

Weddell seals (Leptonychotes weddellii) are important predators in the Southern Ocean and are among the best-studied pinnipeds on Earth, yet much still needs to be learned about their year-round movements and foraging behaviour. Using biologgers, we tagged 62 post-moult Weddell seals in McMurdo Sound and vicinity between 2010 and 2012. Generalized additive mixed models were used to (i) explain and predict the probability of seal presence and foraging behaviour from eight environmental variables, and (ii) examine foraging behaviour in relation to dive metrics. Foraging probability was highest in winter and lowest in summer, and foraging occurred mostly in …

A Growth Model For Arctica Islandica: The Performance Of Tanaka And The Temptation Of Von Bertalanffy—Can The Two Coexist?, John M. Klinck, Eric N. Powell, Kathleen M. Hemeon, Jillian R. Sower, Daniel R. Hennen

CCPO Publications

Organisms increase in size over time (age) due to excess assimilation over metabolic (respiration) energy demands. Most organisms reach a maximum size with increasing age as gain and loss balance. The von Bertalanffy length-at-age relationship, which is commonly used in fishery assessment calculations, imposes such a maximum size. However, some fished species, such as ocean quahogs, Arctica islandica, are long lived and continue to grow at old age. The Tanaka age-at-length relationship has continued growth at old age, but is rarely used in stock assessment models. A modified form of the von Bertalanffy model is presented, which mimics the …

The Southern Ocean Ecosystem Affects The Entire World, Eugene J. Murphy, Nadine M. Johnston, Eileen E. Hofmann, Richard A. Phillips, Jennifer E. Jackson, Andrew J. Constable

CCPO Publications

The Southern Ocean, which flows around the Antarctic continent, is home to vast numbers of unique and remarkable animals, including penguins, albatrosses, petrels, seals, and whales. The ocean bursts into life every spring, fueling a summer feeding and breeding frenzy. During the dark winter months, there is little food and life is very harsh. Human activities such as fishing and pollution are affecting this ecosystem, as is climate change. These ecosystem changes matter beyond the Southern Ocean! Ocean currents carry nutrients and organisms into and out of the Southern Ocean. Many marine mammals and seabirds swim or fly in and …

Hide And Seek: An Exploration Of Antipredator And Predator Avoidance Mechanisms In Orthopodomyia Signifera In Response To Predation From Toxorhynchites Rutilus, Nathaniel Dahlberg

Master's Theses

There have been many observations of larval Orthopodomyia signifera coexisting with the predator Toxorhynchites rutilus. There are three hypotheses that could explain how Or. signifera resists predation from Tx. rutilus. The first hypothesis states that larvae adapt behavioral changes that limit predation. The second hypothesis states thoracic setae serve as a physical defense that prevents Tx. rutilus from grasping Or. signifera. The third hypothesis states Or. signifera possess a chemical defense indicated by aposematic coloration. To test the first hypothesis larval Or. signifera were exposed to conspecific and heterospecific predation cues and their behavior was observed. Both cues …

First Record Of The Occurrence Of The Chinese Pond Mussel Sinanodonta Woodiana (Lea, 1834) (Bivalvia: Unionidae) In African Freshwaters: Oubeira Lake, Algeria, Lamia Bensaad-Bendjedid, Salah Telailia, Faiza Alliouche, Hassen Touati, Imen Ladjama

Turkish Journal of Zoology

The Chinese pond mussel Sinanodonta woodiana (Lea, 1834) (Bivalvia: Unionidae) is among the most invasive freshwater species worldwide. The last decades have seen its rapid geographical spread beyond the species' natural range, particularly in anthropogenically modified water bodies across Asia, America, and Europe where it is now very common. In this paper, we also confirm the presence of S. woodiana in Africa (Algeria) by establishing the UNESCO Biosphere Reserve and Ramsar site Oubeira Lake as a new locality for its occurrence. In all likelihood, S. woodiana was accidentally introduced in the 1980s with Asian fish species imported from Hungary for …

Biodiversity Of Mosquitoes (Diptera: Culicidae), Vectors Of Important Arboviral Diseases At Different Altitudes In The Central Part Of Iran, Azim Paksa, Mozaffar Vahedi, Saideh Yousefi, Nasrollah Saberi, Sara Rahimi, Masoumeh Amin

Turkish Journal of Zoology

Risk assessment and vector control programs rely on a comprehensive knowledge of mosquito diversity in different areas. The present study aims to evaluate mosquito biodiversity in different areas of Sirjan County, Kerman Province, as one of the most important economic zones of Iran. Totally 4538 mosquitoes representing 19 species and four genera were collected and identified. Results showed that Culiseta longiareolata and Culex quinquefacsiatus were constant, Culex destricola, Culex pusillus, Culex pipiens and Culex laticinctus were common and the other captured species were accidental species in Sirjan County. In this study, Aedes vittatus was recorded for the first time in …

Condition Factor And Length-Weight Relationships Evaluation Of 15 Oxynoemacheilus Species (Cypriniformes: Nemacheilidae) From Iran, Atta Mouludi-Saleh, Soheil Eagderi, Erdoğan Çi̇çek, Edris Ghaderi

Turkish Journal of Zoology

This study was conducted to determine the relationship between the length and weight (LWR) of 15 Oxynoemacheilus species i.e. Oxynoemacheilus bergianus, O. brandtii, O. chomanicus, O. euphraticus, O. elsae, O. frenatus, O. karunensis, O. kiabii, O. kurdistanicus, O. longipinnis, O. parvinae, O. persa, O. marunensis, O. zagrosensis, and O. zarzianus from Iranian inland waters. LWRs with high coefficients of determination were calculated for all species. The values of the slope parameter (b) ranged from 2.225 in O. brandtii to 3.575 in O. euphraticus. Fulton's condition factor (K$_{F}$) ranged from 0.673 in O. persa to 1.407 in O. kiabili …

New Records Of Gastropods (Caenogastropoda And Heterobranchia) From The Turkish Coasts With Observations On Some Poorly Known Species, Bi̇lal Öztürk, Nesli̇han Türkçü, Banu Bi̇tli̇s

Turkish Journal of Zoology

This work presents information about 19 taxa recorded from different habitats at depths between 0.2 and 508 m in the last two decades, which are new records or poorly known species along the Turkish coasts. Among the identified species, Epitonium vaillanti, Melanella cf. lubrica, Melanella monterosatoi, Pelseneeria minor, Setia amabilis, Kurtziella serga, Rissoella diaphana, Rissoella inflata, and Spirolaxis clenchi are new records for the Turkish mollusc fauna, Eatonina pumila is new report for the Turkish coast of the Aegean Sea, and Eatonina ochroleuca, Acirsa subdecussata, Lamellaria latens, Setia pulcherrima, Setia valvatoides, and Turbonilla cangeyrani are species with rare distribution …

Quantifying Residual Feed In A Fence-Line Feedlot Bunk Using Depth Camera Imaging Techniques, Jean Niwenshuti, Galen E. Erickson, Tami M. Brown-Bandl, Eric T. Psota, Yijie Xiong

Nebraska Beef Cattle Reports

Feed bunk management requires intensive labor and relies on manual observation to estimate the amount of residual feed in the bunk. Alternative and innovative technologies were used to estimate the weight of residual feed in a concrete fence-line bunk using a depth camera. Depth cameras capture the distance between the camera and the object in their field of view. This study used a time-of-flight depth camera (Azure Kinect, Microsoft) to estimate the weight of residual feed in a partial fence-line concrete bunk using 11 common feed ingredients. The camera was fastened approximately 3.3 ft above the center of the bunk …

Unraveling A Paradox Of Habitat Relationships: Scale-Dependent Drivers Of Temporal Occupancy-Abundance Relationships In A Cooperatively Breeding Bird, Natasha D.G. Hagemeyer, Mario B. Pesendorfer, Walter D. Koenig, Eric L. Walters

Biological Sciences Faculty Publications

Context Spatial occupancy and local abundance of species often positively covary, but the mechanisms driving this widespread relationship are poorly understood. Resource dynamics and habitat changes have been suggested as potential drivers, but long-term studies relating them to abundance and occupancy are rare. In this 34-year study of acorn woodpeckers (Melanerpes formicivorus), a cooperatively breeding species, we observed a paradoxical response to changes in habitat composition: despite a reduction in the availability of high-quality breeding habitat, the population increased considerably.

Objectives We investigated the role of annual variation in food availability and long-term changes in habitat composition as predictors …

Inferring Exposure To Harmful Pseudo-Nitzschia Blooms From Ocean-To-Estuary Gradients In Domoic Acid Concentrations In Humboldt Bay Bivalves, Natasha Hope Ficzycz Winnacott

Cal Poly Humboldt theses and projects

Harmful algal blooms (HABs) result from outbreaks of any of several different species of toxin-producing phytoplankton and that can have major detrimental effects on marine ecosystems and pose severe health and economic threats to human communities. Of particular concern along the United States West Coast are HABs of pennate diatom genus Pseudo-nitzschia that produce the potent neurotoxin domoic acid (DA). The coastal ocean between Cape Mendocino, CA, and Cape Blanco, OR is a hotspot for Pseudo-nitzschia spp. HABs. Such blooms impact coastal fisheries and pose a potential threat to aquaculture operations in Humboldt Bay, California’s second largest estuary and largest …

Effects Of Landscape Configuration Metrics On American Barn Owl Nest Box Occupancy And Hunting, Samantha D. Chavez

Cal Poly Humboldt theses and projects

Harnessing ecosystem services, broadly defined as the benefits nature gives to people, is one approach to minimize the widespread negative impacts of agriculture on wildlife and biodiversity conservation. Conservation biological control is one such service that aims to use natural enemies to reduce crops losses from pests without the use of harmful pesticides, including rodenticides. In Napa Valley, California, human-made nest boxes are deployed on wine grape vineyards to attract barn owls (Tyto furcata) that depredate and remove thousands of rodent pests throughout the nesting season. However, the provisioning of this ecosystem service depends on whether a box …

Host-Microbe Interactions In Non-Native Estuarine Anemones: Biogeography And Temperature, Parker K. Lund

Cal Poly Humboldt theses and projects

Non-native species are increasing in prevalence around the world, resulting in negative economic and ecological impacts. However, the broad distributions of non-native species also offer a system for investigating the response of host-associated microbial communities to environmental factors across a range of ecological scales. At the broadest scale, I investigated the geography of microbial communities in the non-native estuarine anemone Diadumene lineata on the west coast of the United States of America. Across latitudes, microbial community composition was very similar and displayed a high percentage of Klebsiella spp. at all sites. However, the communities in California tended to exhibit higher …

Carnivore And Ungulate Occurrence In A Fire-Prone Region, Sara J. Moriarty-Graves

Cal Poly Humboldt theses and projects

Increasing fire size and severity in the western United States causes changes to ecosystems, species’ habitat use, and interspecific interactions. Wide-ranging carnivore and ungulate mammalian species and their interactions may be influenced by an increase in fire activity in northern California. Depending on the fire characteristics, ungulates may benefit from burned habitat due to an increase in forage availability, while carnivore species may be differentially impacted, but ultimately driven by bottom-up processes from a shift in prey availability. I used a three-step approach to estimate the single-species occupancy of four large mammal species: mountain lion (Puma concolor), coyote …

Genetic Evaluation Of The Current Distribution And Possible Diffrentations Between Lasiurus Borealis And Lasiurus Frantzii In Southwestern North America, Zeinab M. Haidar

Cal Poly Humboldt theses and projects

Several recent accounts of overlap and historic misidentifications regarding two species of the genus Lasiurus, Western red bat (Lasiurus frantzii) and Eastern red bat (Lasiurus borealis), have cast doubt on our understanding of their distribution, assumed spatial allopatry, and interactions in the United States Southwest. With the use of morphometrics and genetic sequencing, utilizing tissue collected from specimens throughout California and adjoining states, we have reassessed the current distribution, best practices for field identification, and genetic differentiation between both species. Appropriate species classification by region was achieved utilizing mitochondrial DNA, targeting the cytochrome c oxidase …

A Theoretical And Computational Model For Aquaponics Systems, Isabella M. Digiulio

Honors Theses

Aquaponics, a sustainable farming technique combining the principles of aquaculture and hydroponics, suffers from uncertainty in its optimal operating conditions, preventing large-scale adoption of this technology. Relying on experimentation or full-scale testing to address these uncertainties is an approach that is material, labor, time, and cost intensive. As a result, aquaponics would benefit from a complete computational model of the system. This would allow for information to be gained without long and expensive experiments, but rather with knowledge of system operations and a modeling software package. In this study, the Activated Sludge Model 1 (ASM1) matrix framework, traditionally used in …

Analysis For Prioritizing Risk Status And Sustainable Utilization Of Cattle, Sheep, And Goat Breeds In Türkiye, Mesut Yildirir, Seyrani̇ Koncagül, Yasemi̇n Öner, Ayşe Oya Akin

Turkish Journal of Veterinary & Animal Sciences

Animal Genetic Resources (AnGR) are a warranty for future unknown conditions and needs. Due to this fact, sustainable use and conservation of AnGR have special importance, and to achieve reliable programs for these goals, the risk status of AnGR should be estimated accurately. The aim of this study was to estimate the risk status for three widely used domesticated livestock species of cattle, sheep, and goat in animal production: 6 cattle, 33 sheep, and 15 goat breeds were included in the analysis. Extinction probability (z) was taken as a criterion for the risk status of each breed. Data collection based …

Genotyping Of The Κ - Casein Gene By Pcr - Rflp (Acui Digestion) And Its Relationship To Milk Yield Traits In Anatolian Buffaloes, Murrah Buffaloes, And Their Crosses, Orhan Karadağ, Vasfi̇ye Kader Esen, Mehmet Aki̇f Yüksel, Mustafa Küçükkebabçi, Semi̇h Sevi̇m, İlkay Çeti̇n, Bi̇nnur Kaptan, Mehmet İhsan Soysal

Turkish Journal of Veterinary & Animal Sciences

The aim of this study was to investigate the polymorphism of the κ - casein gene (kappa casein, CSN3) in buffaloes and determine its effects on milk yield traits. Data were obtained from 2016 to 2019 from all animals in the ongoing Anatolian Buffalo Breeding Project. Genomic DNA was collected from a total of 209 buffaloes of different ages and sexes, namely 31 Murrah, 46 Anatolian buffaloes, and 132 of their crosses (Murrah × Anatolian). Genotyping of CSN3 gene by polymerase chain reaction-restriction fragment length polymorphism (PCR - RFLP) technique with restriction enzyme (AcuI) revealed three …

Are The Mandible Shapes Of Common (Paradoxurus Hermaphroditus) And Golden (Paradoxurus Zeylonensis) Palm Civets Different? A Pilot Study, İftar Gürbüz, Yasi̇n Demi̇raslan, Channa Rajapaksha, Devaka K. Weerakoon, Saminda Fernando

Turkish Journal of Veterinary & Animal Sciences

In this study adult common and golden palm civet mandibles were analysed by geometric morphometric method. For this purpose, the materials were photographed in accordance with the procedure and analysed using computer programs. No allometric component was detected in the comparison of the mandibles. The first principal component defined 28.657% of the total shape variation in the mandibles of the two groups that were analysed with a total of 19 landmarks. The samples were largely separated from each other in the principal component analysis. The shape differences were mostly in the caudal of the mandible. Also, in the common palm …

Efficacy Of Acacia Nilotica Bark Extract As An Alternative To Antibiotics In Broilers Challenged With Escherishia Coli From 15 To 28 Days, Muhammad Umer Zahid, Anjum Khalique, Shafqat Nawaz Qaisrani, Muhammad Ashraf, Ali Ahmad Sheikh, Muhammad Umar Yaqoob

Turkish Journal of Veterinary & Animal Sciences

The present experiment was conducted to compare the effect of Acacia nilotica bark extract and antibiotic on different biological parameters in broilers challenged with E. coli. Five hundred 2-week-old broiler chicks were divided into five treatments (Cont, NC, PC, AN-BE3, and AN-BE5) with ten replicates per treatment (10 chicks per replicate), and the experiment was extended over 2 weeks. All chicks, except that of Cont were challenged with E. coli (10$^{7}$ CFU/bird). Cont: basal diet only; NC: challenged with E. coli; PC: NC + Zinc Bacitracin 50 mg/kg diet; AN-BE3: NC + A. nilotica bark extract supplementation 0.3%; …

The Efficiency Of Toltrazuril, Thymol, And Toltrazuril + Thymol Combination On Eimeriosis In Lamb, Mehmet Özüi̇çli̇, Ahmet Onur Gi̇ri̇şgi̇n, İhsan Kisadere, Ali̇ İhsan Di̇ker, Ali̇ Erdi̇ Candar, Levent Aydin

Turkish Journal of Veterinary & Animal Sciences

This study aimed to evaluate and compare the efficacy of the treatment with a single dose of toltrazuril 5% (Baycox), thymol (Versatile, Nine Life, United Arab Emirates), and toltrazuril + thymol combination to control Eimeria spp. infection in lambs in intensive feeding. The study was designed with five groups and these groups aligned as; group 1 (negative control group; NEG), group 2 (positive control group; POZ), group 3 (thymol; THY), group 4 (toltrazuril; TOL) and group 5 [(thymol + toltrazuril; (THY + TOL)]. Each group consisted of 26 Merino lambs which are 60-75 days old each. Treatment groups were administered …