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Effect Of Depth-Dependent Target Strength On Biomass Estimation Of Japanese Anchovy, Hiroto Murase, Atsushi Kawabata, Hiroshi Kubota, Masayasu Nakagami, Kazuo Amakasu, Koki Abe, Kazushi Miyashita, Yoshioki Oozeki

Journal of Marine Science and Technology–Taiwan

Effect of the depth-dependent target strength (TS) on biomass estimation of Japanese ahcovy was examined by using following four TS models: (1) TS = 20logLt-71.9, (2) TS = 20logLt-72.5, (3) TS = 20logLt-(20/3)log(1+z/10)-67.6 and (4) TS = 20logLt-(20/3)log(1+z/10)-64.7, where Lt and z represent total length (cm) and depth (m), respectively. (1) and (2) have been used in conventional fisheries resources surveys; (3) and (4) take account of depth-dependent TS. Because (1)-(3) were based on in-situ measurement, pitch angles of individuals used in the models were not known. Pitch angle is assumed 0° (±10° std) in (4). Biomass estimated by (3) …

Fish Acoustics: Physics-Based Modeling And Measurement, Davis Benjamin Reeder

Journal of Marine Science and Technology–Taiwan

The U.S. Office of Naval Research has sponsored research in the area of marine organism acoustics for many years. The research program has included development of theoretical physics-based acoustic scattering models of single animals, high-resolution laboratory measurements of scattering by individual animals, and at-sea field experiments. The program has been focused on the backscattered signal, but has also included investigation of the forward-scattered signal. Downward-looking acoustic surveys using ship borne echosounders rely on the backscattered signal and provide non-invasive, non-destructive, rapid, high-resolution, large area survey capability compared to traditional net tows. Horizontally-oriented acoustic surveys provide the opportunity to investigate both …

Vertical Distribution Of Walleye Pollock Juveniles Before And After The Period Of Transition For Feeding In Funka Bay, Hokkaido, Japan, Yohei Kawauchi, Osamu Shida, Hiroya Okumura, Naoki Tojo, Hiroki Yasuma, Kazushi Miyashita

Journal of Marine Science and Technology–Taiwan

We examined the vertical distributions of walleye pollock Theragra chalcogramma juveniles for two size groups (smaller and larger than 30 mm) during the period of transition for feeding (PTF) and after this period in Funka Bay, Hokkaido, Japan. Samplings were conducted in May and June in 2006 and 2007, and water temperature and salinity were measured. The correlation between juvenile sizes and distributed depth was observed using net sampling. From this result, size groups were divided by depth. In addition, the distribution and abundance of juveniles were examined using acoustic data. In the PTF (May), juvenile size increased with increasing …

An Alignment Approach To Identify Fish With Encoding Hydroacoustic Signal To Acoustics Alphabet Squences, Shih-Yen Ku, Hsueh-Jung Lu, Chi-Ting Tseng, Ker-Chau Li, Long-Jin Wu

Journal of Marine Science and Technology–Taiwan

1D sequence homologous alignment tool, like FastA (FASTALL) [8] or BLAST (Basic Local Alignment Search Tool) [1], has been widely used in bioinformatics field and perform elegant and fast searching for the sequences developed from the same kinds of species. In other word, it can classify through determining the homologous similarity which is not totally similar in sequences of protein sequences, structure or nucleotide sequences. An approach is proposed in this paper called AA-FAST (abbreviation for Acoustics Alphabet-FAST) which takes advantage of alignment tool and significant sequence encoding method. In this experiment, it could not only determine 4 fish species …

Redescription And Taxonomic Position Of Tityus Atriventer Pocock, 1897 (Scorpiones: Buthidae), Rolando Teruel, František Kovařík

Euscorpius

The largely neglected Lesser Antillean scorpion Tityus atriventer Pocock, 1897 is herein redescribed, after study of the two syntypes and one additional adult male. The latter was recently collected from Union Island (about 55 km northeast of Grenada), and it implies the first published finding of this species after its original description, and the first record of the species both outside the type-locality and from the Grenadines islands. The taxonomic position of T. atriventer is clarified (including designation of a lectotype and a paralectotype), its diagnosis is updated, a fully illustrated redescription is presented according to the current taxonomy of …

Personality Traits Predict Hierarchy Rank In Male Rainbowfish Social Groups, Mathieu Colléter, Culum Brown

Sentience Collection

Personality traits are becoming increasingly important in explaining adaptive individual differences in animal behaviour and probably represent a leading edge of the evolutionary process. Despite the newfound interest in animal personality among behavioural ecologists, fewstudies have investigated the link between personality traits and fitness measures. We examined this link using male rainbowfish, Melanotaenia duboulayi, as a model species and found that a range of personality traits (aggression, activity and boldness) covaried with a male’s position in a hierarchy, which is directly related to reproductive success in this and many other species. Dominant fish were more aggressive, active, bold and also …

Rna Interference In Marine And Freshwater Sponges: Actin Knockdown In Tethya Wilhelma And Ephydatia Muelleri By Ingested Dsrna Expressing Bacteria, Ajna S. Rivera, April L. Hill, Et. Al.

Biology Faculty Publications

Background: The marine sponge Tethya wilhelma and the freshwater sponge Ephydatia muelleri are emerging model organisms to study evolution, gene regulation, development, and physiology in non-bilaterian animal systems. Thus far, functional methods (i.e., loss or gain of function) for these organisms have not been available.

Results: We show that soaking developing freshwater sponges in double-stranded RNA and/or feeding marine and freshwater sponges bacteria expressing double-stranded RNA can lead to RNA interference and reduction of targeted transcript levels. These methods, first utilized in C. elegans, have been adapted for the development and feeding style of easily cultured marine and freshwater poriferans. …

Seed Abundance For Waterfowl In Wetlands Managed By The Illinois Department Of Natural Resources, Joshua D. Stafford, Aaron P. Yetter, Christopher S. Hine, Randolph S. Smith, Michelle M. Horath

Natural Resource Management Faculty Publications

Managed wetlands on public lands in Illinois, United States, provide foraging habitats for migrating and wintering waterfowl. However, few studies have estimated abundances of waterfowl foods in mid-migration regions of North America, yet such information is needed to inform management and conservation decision-making. During 2005– 2007, we used a multistage sampling design to estimate moist-soil plant seed production (kg/ha, dry mass) and energetic carrying capacity at sites managed by the Illinois Department of Natural Resources and modeled variation in seed biomass. Average seed biomass among all sites ranged from 1,030.0 6 64.1 (SE) kg/ha in 2005 to 501.5 6 124.1 …

The Maternal Effect: Carrying The Consequences Of Nutrition Across Generations, Kevin Monteith, Joshua Delger, Lowell Schmitz, Kyle Monteith, Jonathan A. Jenks

Natural Resource Management Faculty Publications

Let’s indulge ourselves in a deer-management fantasy for a moment. I’m sure it won’t be your first time! Imagine you are blessed to own and manage your own block of deer country for several years (for many fortunate readers, this is reality, not fantasy). Although the ground you purchase holds plenty of deer, the overgrown forests and grassy meadows might not be providing the nutrition necessary for these deer to achieve their genetic potential. In addition, the 6-foot high browse line resulting from extreme overabundance of deer is a likely indication of why only scrawny looking bucks are typically harvested …

Botteri's Sparrow (Peucaea Botterii) Occurs In Northern Coahuila, Mexico, Paul Van Els, Ricardo Canales-Del-Castillo, John Klicka

Ornithology Program (HRC)

Botteri’s Sparrow (Peucaea botterii) occurs widely in the shrub-grasslands of southern North America. We report a breeding population of the species in the Sierra de la Encantada of northern Coahuila, Mexico, ~80 km from the Big Bend area of Texas and >300 km from the nearest previously known breeding range in southern Coahuila and central Chihuahua. We captured three individuals, which show a mostly gray dorsal coloration, suggestive of the texana subspecies, occurring from southern Texas to northern Veracruz. The exact affinity of the northern Coahuila population still needs to be ascertained. The presence of Botteri’s Sparrow in northern Coahuila …

Studying Milk Coagulation Kinetics With Laser Scanning Confocal Microscopy, Image Processing, And Computational Modeling, Richard Joseph Hennessy

Master's Theses

The kinetics of milk coagulation are complex and still not well understood. A deeper understanding of coagulation and the impact of the relevant factors would aid in both cheese manufacturing and also in determining the nutritional benefits of dairy products. A method using confocal microscopy was developed to follow the movement of milk fat globules and the formation of a milk protein network during the enzyme-induced coagulation of milk. Image processing methods were then used to quantify the rate of coagulation. It was found that the texture of the protein network is an indicator of the current status of the …

The Ma-10 Cell Line As A Model Of Insl3 Regulation And Leydig Cell Function, Mary E. Strong

Master's Theses

Leydig cells produce testosterone in response to luteinizing hormone (LH) via the cyclic adenosine monophosphate (cAMP)/protein kinase A pathway. Additionally, these cells are responsible for producing insulin-like peptide 3 (INSL3), a peptide hormone that is essential for testicular descent. The insl3 promoter in Leydig cells can be activated by cAMP through the transcription factor Nur77, which has also been shown to regulate the promoters of the steroidogenic enzymes, cyp17 and 3b-hsd. While the mechanism of LH action on testosterone production is well characterized, the effect of LH on insl3 abundance has yet to be shown directly. The MA-10 …

Bovine Viral Diarrhea Beef-Herd Risk Assessment, Kerry A. Rood, C Kim Chapman

All Current Publications

This publication gives insite into understanding where the greatest risk to a herd is, relative to the introduction of bovine viral diarrhea (BVD).

Genistein's Effect On Acrosome Reaction Of Ram Sperm, Samantha L. Gerecke

Student Theses and Dissertations

Capacitation and acrosome reaction are important processes that sperm cells must undergo in the female reproductive tract in order for fertilization of the ova to occur. Genistein, a phytoestrogen, has been shown to inhibit protein tyrosine kinase (PTK) receptors, an important signal transducer involved in capacitation and acrosome reaction of sperm cells, leading to decreased fertility. In this study, genistein was added to electroejaculated ram sperm in concentrations of 100 µM, 1 mM, and 2 mM, estradiol-17â (100 µM) to serve as a positive estrogenic control. Sheep serum was used to initiate sperm capacitation, and Ca2+ ionophore A23187 was used …

Effects Of Exposure To Low, Ecologically Relevant Doses Of Atrazine On Somatic And Gonadal Development In American Toad (Bufo Americanus) Tadpoles, Tyler Davis Hoskins

Undergraduate Honors Thesis Collection

Atrazine is the most commonly used herbicide in the United States, with 80 million pounds applied annually, making it the most common contaminant of ground and surface water nationwide. It has been shown to act as a potent endocrine disrupter in amphibians, causing altered somatic and gonadal development in the ecologically relevant part per billion range; as a result, it has been hypothesized that atrazine may be a major factor behind amphibian declines. However, responses of different species to the chemical vary widely, and have made predicting susceptibility difficult. Recently, it has been shown that life history can serve as …

Finding A Link Between The Hormones Of The Somatotropic Axis And Growth Rate Of Juvenile Steller Sea Lions, Katherine Denise Hebert

Honors Scholar Theses

The decline of the Western population (144 degrees west longitude) of Steller sea lions is hypothesized to be the result of impaired nutritional status and decline of growth rate, especially in juveniles and subsequent natality. Because changes in components of the somatotropic axis can be predictive of nutritional status and growth rate in this species, 2 groups of free-ranging juvenile Steller sea lions were captured in Prince William Sound, AK. Group 1 (n = 30) was initially captured at 5 mo and recaptured at 10 mo of age, whereas group 2 (n = 9) was captured at 7 and 8 …

Expression Of Porcine Reproductive And Respiratory Syndrome Virus (Prrsv) Non-Structural Protein 12 In Escherichia Coli, Ariann Boylan

Honors Scholar Theses

Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) is single-stranded, positive-sense RNA virus in the family Arteviridae, order Nidovirales. PRRSV began circulating in the U.S swine population in the 1980's and since then becoming the most economically significant disease of swine herds. PRRSV is now disseminated worldwide causing great economic losses to pork industries. PRRSV single-stranded RNA genome is15 kb in length. The genome encodes 9 open reading frames (ORF1a, ORF1b,

ORF2a, ORF2b and ORFs 3 through 7). ORFs 1a and 1b encode for 13 non-structural proteins (nsp) that are suggested to be involved in transcription and viral genome replication. The …

Characterization Of Differentiation Of Bovine Mammary Epithelial Cells, Amanda C. Lopez

Honors Scholar Theses

In American society, dairy products are vital for nutrition and the economy. Optimizing the process of producing milk can benefit the consumers, producers, and the animals involved. Understanding the mechanisms of the development of the mammary gland can increase the efficiency of milk production, as well as improve animal health.

Mammary epithelial cells (MEC) are the functional unit of the mammary gland. Although, there is a well-established MEC cell line, known as MAC-T, the use of a primary cell line is preferred because it more closely mimics an in vivo model. To better understand how mammary cell differentiation is regulated, …

Skeletal Development In Oviparous And Viviparous Populations Of Saiphos Equalis., Melia Baker

Undergraduate Honors Theses

This study examines ossification at different embryonic stages to develop a pattern of ossification and to look at differences between oviparous and viviparous populations of the same species.

A New Species Of Vaejovis From Prescott, Arizona (Scorpiones: Vaejovidae), Richard F. Ayrey, Michael E. Soleglad

Euscorpius

A new scorpion species, Vaejovis crumpi, sp. nov., is described from Prescott, Yavapai Co., Arizona. This species is related to V. paysonensis Soleglad, 1973, and the “sky island” species of southern Arizona. V. crumpi is compared to the seven Vaejovis species currently reported for Arizona, in particular to V. paysonensis.

The Effects Of Multispecies Grazing On Pasture Management And Utilization, Chelsea Williams

Masters Theses & Specialist Projects

Multispecies grazing research was conducted using meat-type goats (Capra hircus L.) and Jersey heifers (Bos taurus L.) to determine the relationships between multiple grazing treatments and pasture utilization. The study was conducted for 60 days on the Western Kentucky University Farm in Bowling Green, KY. Cattle and goats have shown to differ in grazing preferences and to be economically important to the area. Grazing treatments included goats and cattle grazing simultaneously, sequentially, and goats grazing alone. A typical established Kentucky pasture was utilized with no weed management practices employed. Predominant forage species included tall fescue (Festuca arundinacea Schreb.), orchardgrass (Dactylis …

Kentucky Warbler (Vol. 87, No. 2), Kentucky Library Research Collections

The Kentucky Warbler

No abstract provided.

Developing Mechanisms For The Transfer And/Or Adjustment Of Rock Lobster Shares Between Sectors In Western Australia And South Australia., Chris Reid

Fisheries Management Papers

The purpose of this report has been to investigate potential reallocation mechanisms for the transfer and/or adjustment of catch shares between sectors and the requirements to allow for their implementation, with particular reference to their application in the Western and South Australian rock lobster fisheries. While the report focuses on the commercial and recreational sectors of these fisheries, potentially all non-commercial fishing sectors could be included under a given mechanism in the same manner as that outlined for the recreational sector, subject to the appropriateness of allowing the sector’s allocation to be transferable

Developing Mechanisms For The Transfer And/Or Adjustment Of Rock Lobster Shares Between Sectors In Western Australia And South Australia, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Analytic And Numerical Studies Of A Simple Model Of Attractive-Repulsive Swarms, Andrew S. Ronan

HMC Senior Theses

We study the equilibrium solutions of an integrodifferential equation used to model one-dimensional biological swarms. We assume that the motion of the swarm is governed by pairwise interactions, or a convolution in the continuous setting, and derive a continuous model from conservation laws. The steady-state solution found for the model is compactly supported and is shown to be an attractive equilibrium solution via linear perturbation theory. Numerical simulations support that the steady-state solution is attractive for all initial swarm distributions. Some initial results for the model in higher dimensions are also presented.

Assessing The Stability, Biological Transfer And Developmental Impact Of Environmentally Relevant Nitrosamines Using A Chicken Egg Model, Nikita Joshi

Environmental Health, Occupational Health, and Toxicology: Dissertations and Student Research

Nitrosamines comprise a large group of potentially toxic compounds occurring in the environment as by-products of various manufacturing, agricultural and natural processes. Nitrosamines are produced from reaction of nitrite with a suitable secondary amine in an acidic matrix; these acidic conditions can occur in environmental media and in the mammalian gastrointestinal (GI) tract. This research focused on the stability, transfer, and impacts of the environmentally relevant nitrosamines, N-nitrosodimethylamine (NDMA), N-nitrosmorpholine (NMOR), and N-nitrosoatrazine (NNAT) (formed from reaction of nitrite with dimethylamine, morpholine, and atrazine), using the chicken egg and embryo model systems. Chicken eggs were used to …

An Assessment Of Stable Hydrogen-Isotope Analysis Methods To Assign Geographic Origin To Migratory Red-Tailed Hawks (Buteo Jamaicensis), Carla Marie Ahlschwede

Department of Environmental Studies: Undergraduate Student Theses

Stable-hydrogen isotopes are becoming an increasingly popular method of studying migratory birds, though sample preparation methods may affect results.  In this study I examined feathers from red-tailed hawks (Buteo jamaicensis) to determine the relationship between measure of δD due to inter-feather variation or drying methods, assessed the accuracy of results by using two birds of known-origin and estimated possible natal origins of migratory red-tailed hawks.  Two feathers per individual were taken from 81 wild hawks caught at Hitchcock Nature Center near Crescent IA and from 2 rescued red-tailed hawks, Raptor Recovery Nebraska near Eagle, NE. 119 of the …

Effects Of Regional Cold Fronts And Localized Weather Phenomena On Autumn Migration Of Raptors And Landbirds In Southwest Idaho, Robert A. Miller, Jay D. Carlisle, Gregory S. Kaltenecker

Intermountain Bird Observatory Publications and Presentations

Weather has a significant effect on avian migration, but whether the influence is similar across diverse geographic regions and across all species remains to be determined. We evaluated the effect of regional cold fronts and localized weather phenomena on the timing of autumn migration of multiple species of landbirds and raptors in southwest Idaho. The focus of the analysis was on total landbirds and the ten most common landbird species, along with total raptors and the eight most common raptor species. Using 13 years of data from the Idaho Bird Observatory in southwest Idaho (1997–2009), including standardized mist-net captures of …

Blarina Hylophaga (Sorciomorpha: Soricidae), Cody W. Thompson, Jerry R. Choate, Hugh H. Genoways, Elmer J. Finck

University of Nebraska State Museum: Mammalogy Papers

Blarina hylophaga (Elliot, 1899) is a soricid commonly called Elliot’s short-tailed shrew. A short-legged, robust shrew with a long, pointed snout and a short tail; it is 1 of 4 species in the genus Blarina. It occurs throughout most of the Great Plains of the United States, where it inhabits moist, well-drained grassland and riparian areas with deep leaf litter. It is listed as a species of greatest conservation need in Iowa and at possible risk in Texas, which might be due to the limited knowledge of the species throughout its geographic range.

Regulation Of Immediate Early And Epithelial–Mesenchymal Transition Genes Expression By Adipocytokines In The Female Reproductive Tract, Zhufeng Yang

Department of Animal Science: Dissertations, Theses, and Student Research

Individuals who are overweight or obese are at increased risk for cancer.  However, the mechanistic link between obesity and cancer is poorly defined.  Adipose tissue produces hormones and pro-inflammatory cytokines with mitogenic properties.  Many of these hormones and cytokines are altered in obese individuals and may lead to disruption of the normal balance between cell proliferation, differentiation, and apoptosis. Thus, the objective of this study was to determine how adipocyte-derived factors regulate the expression of genes that contribute to cell proliferation and migration.  To compare immediate early gene (cell proliferation) and epithelial-mesenchymal transition (cell migration) gene expression between untreated and …