Digital Commons Network^™

Tracking The Forest People: In The Rainforests Of Borneo, Erin Vogel '95 Studies A Group Of Orangutans In Hopes Of Protecting This Dwindling Species, Adriana Nordin Manan

Colby Magazine

Erin Vogel ’95 studies orangutans up close in the rainforest of Borneo. An anthropologist at UC Santa Cruz, Vogel wants to know what these orangutans eat and why, in hopes that the knowledge will help protect this dwindling species.

The Search For The Ivory-Billed Woodpecker: Sara Barker And A Team Of Researchers Find Conclusive Evidence That Brings The Ivory-Billed Woodpecker Back From 'Extinction', Gerry Boyle

Colby Magazine

An extinct ivory-billed woodpecker in an Arkansas swamp? Sara Barker '94 coordinated the team that quietly searched the swamp to see if the "grail bird" lives.

Linking Animal Behavior To Useful Natural Repellents, Sandra Avant

Agricultural Research Magazine

A little monkey business is revealing a few clues about natural remedies that animals use to protect themselves against biting insects and arthropods.

Certain species of animals, such as monkeys and birds, anoint themselves with citrus, other plants, and creatures like millipedes. To find out more about this behavior and to determine if any chemicals in the anointing substances effectively deter ticks and mosquitoes, scientists are examining responses to natural compounds.

Scientists at the Agricultural Research Service Henry A. Wallace Beltsville [Maryland] Agricultural Research Center (BARC) and the Smithsonian Conservation Biology Institute (SCBI) at the National Zoological Park in Front …

Trickery And Other Methods Explored To Vanquish Potato Cyst Nematodes, Roy Navarre, Jan Suszkiw

Agricultural Research Magazine

The pale cyst nematode, Globodera pallida, is one bad roundworm.

Unchecked, it invades the roots of potato and other host crops to feed, obstructing the free flow of nutrients and causing stunted growth, wilted leaves, and other symptoms that can eventually kill the plant. Severe infestations in potato fields can cause yield losses of up to 80 percent.

To make matters worse, female G. pallida nematodes form hard, round cysts that safeguard their eggs from predators and parasites, inhospitable conditions, or a scarcity of food. As many as 30 years may pass before the eggs hatch (cued by a …

A Desert Shrub’S Crystallized Protein Sheds Light On Photosynthesis, Michael Salvucci, Dennis O’Brien

Agricultural Research Magazine

Plants use an enzyme known as “rubisco” to capture carbon dioxide from the atmosphere and, with energy from the sun and nutrients from the soil, build up the shoots, leaves, and stems that make up the plant itself. Scientists have known that for years. They also have known that temperatures are important. When it gets too hot, a rubisco helper protein called “rubisco activase” shuts down, photosynthesis stops, and the plant stops growing. Heat literally unravels the activase protein, and when it does, the result is a less bountiful harvest. Different plants shut down photosynthesis at different temperatures, and the …

Agricultural Research Magazine, March 2013

Agricultural Research Magazine

Table of Contents

4 Weight Loss, Cortisol, and Your Brain: Scientists Explore Connections

6 How Does Mom’s Nutrition Affect Her Children’s Health? Epigenetics May Provide New Insights

8 Enhancing Yogurt With Healthful Fiber From Oats

9 An Atlas for Guatemala, a Tool for Conserving World Crops

10 Linking Animal Behavior to Useful Natural Repellents

12 Cultural Practices To Maintain Soil Quality and Address Climate Change

15 A Desert Shrub’s Crystallized Protein Sheds Light on Photosynthesis

16 Measuring and Managing Impacts of Manure Spills

18 Trickery and Other Methods Explored To Vanquish Potato Cyst Nematodes

20 Measuring the Potential of Switchgrass …

A Comparison Of Relative Ear Length Between Two Neighboring Populations Of Peromyscus Maniculatus, Joshua S. Willems

Biological Sciences

This study attempts to determine if a significant difference in relative ear length exists between two neighboring populations of Peromyscus maniculatus on the central coast of California. Data was collected from individuals trapped at two plots in the Guadalupe-Nipomo Dunes National Wildlife Refuge and two plots near Black Lake, under the supervision of Francis X. Villablanca, Ph. D. of California Polytechnic State University, San Luis Obispo. A total of 98 individuals were captured over the course of three nights of trapping. A regression analysis was performed comparing the ear lengths of each population relative to body size. The analysis of …

Gas Emissions And Olfactometry For Dairy Heifers, Rebecca Gary

Dairy Science

The objective of this study was to determine any trends in odor evaluations and gas emissions of manure samples in heifers fed high/low concentrate and high/low forage diets. Heifers (n = 8) were enrolled randomly in a split plot design with diet type (high concentrate vs. low concentrate) as the whole plot and forage quality (4 different levels of corn stover within each diet type) as sub-plots in a 4-period (21d) 4X4 Latin square design. Total collection of urine and feces was performed on days 18-21 of each period. The feces to urine ratio (F:U) was determined on days 18 …

Development Of A Training Program For The Cal Poly Creamery, Rachel Souerbry

Dairy Science

No abstract provided.

Detecting Errors In Generating A Certificate Of Analysis, Breanne Harlan

Dairy Science

Many companies rely on a Certificate of Analysis (COA) to accompany the delivery of their product or material. The COA, required by law, prevents customers from questioning whether a product is safe and ensures manufacturers confirm every product tested passes the Food and Drug Administration’s required specifications. Previous to this project, Kraft Foods Springfield copied their test results for each product from their data warehouse software, called Systems, Applications, and Products onto a Word document to create a COA. This was a systematic approach to detect the possible occurrences of error and reduce the time spent on generating a COA. …

Prevalence And Comparative Analysis Of Cutaneous Leishmaniasis In Dargai Region In Pakistan, Clarence Lee

Department of Biology Faculty Publications

In the present study, 102 samples of exudates from cutaneous leishmanial lesions were collected from local Pakistanis and Afghan refugees residing in Dargai Tehsil of Malakand Agency Pakistan, and were analyzed. The lesions were more prevalent among the locals (60.79%) compared to refugees (49.21%), and 70.58% male compared to 30.42% female were infected with Leishmania. Infection was more prevalent among youth's ages of 11-20 year old (34.32%) compared to older adults. Exposed parts of the body (face, hands, legs, neck, ears and feet) were the main affected areas. Faces experienced more bites (36.28%), followed by legs (26.48%), and hands (21.57%). …

Where Has All The Road Kill Gone?, Charles R. Brown, Mary Bomberger Brown

School of Natural Resources: Faculty Publications

An estimated 80 million birds are killed by colliding with vehicles on U.S. roads each year [1], and millions more die annually in Europe [2] and elsewhere. Losses to vehicles are a serious problem for which various changes in roadway design and maintenance have been proposed [3]. Yet, given the magnitude of the mortality reported for some species [4], we might expect natural selection to favor individuals that either learn to avoid cars or that have other traits making them less likely to collide with vehicles. If so, the frequency of road kill should decline over time. No information is …

American Burying Beetle (Nicrophorus Americanus): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the American Burying Beetle (Nicrophorus americanus) as a Tier I at-risk species of high conservation priority. Indeed, the American Burying Beetle (ABB) is a species of conservation need throughout its range. Here, I provide some general management recommendations regarding ABB; however, conservation practitioners will need to use professional judgment for specific management decisions based on objectives, location, and site-specific conditions. This resource …

A Business Model For The Small-Scale, Start-Up, Organic Jersey Dairy, Jim Moreda

Dairy Science

To determine the financial feasibility and stability of starting a small-scale organic jersey dairy in Northern California, given the changes and restrictions that must take place in all aspects of production while operating organically. Using a unique combination of ownership and borrowing, I have created a business model made to appropriately fit the organic dairy system, addressing every area of the operation whether it be business or animal related. Through experience, reviews, and research of organic techniques allowable to apply, I was able to reveal and identify specific areas of husbandry and financing in which I would need to excel …

Fisheries Research Report No. 242 - Biology, Stock Status And Management Summaries For Selected Fish Species In South-Western Australia, Claire B. Smallwood

Fisheries Research Reports

ObjectiveMany people are interested in fishes, but often it can be difficult to access reliable information on the biology, status and management of a particular fish species. Although there is a long history of world class fisheries research and management in Australia, the full details are generally only available in a fragmented manner in various scientific journals, books and reports. In some cases, these sources of information can be difficult to find and, even for fisheries researchers and managers, who usually have access to scientific journals, certain types of information such as unpublished reports or student theses, can be hard …

Loggerhead Shrike (Lanius Ludovicianus): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in the development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Loggerhead Shrike (Lanius ludovicianus) as a Tier I at-risk species. Here, I provide some general management recommendations regarding Loggerhead Shrikes. However, conservation practitioners will need to use professional judgment for specific management decisions based on objectives, location, and site-specific conditions. This resource provides available knowledge of Loggerhead Shrikes that may aid in the decision-making process or in identifying research needs …

The Status Of A Pa Endangered Bird- The Upland Sandpiper, Paul A. Di Salvo, Kalley S. Hansel, Jessica L. Zupancic, Andrew M. Wilson

Student Publications

The upland sandpiper (Bartramia Longuardia) has experienced a steep population decline in the northeastern U.S. since the mid-20^th Century. In Pennsylvania it was found in less than 0.5% of atlas blocks during the Second Atlas of Breeding Birds in Pennsylvania project (2^nd PBBA; 2004-09) and breeding was confirmed at only two locations. Due to continued declines and a small population size, the upland sandpiper was listed as PA endangered in 2012. During May 2012 the areas around 15 2^nd PBBA upland sandpiper sightings were resurveyed by Gettysburg College students and volunteer birdwatchers. The aim was …

Increasing California Dairy Exports To Japan And South Korea, Kristina Soper

Dairy Science

The opportunities for increasing exports of California dairy products to the Japanese and South Korean markets were determined by identifying current obstacles in the California dairy industry and determining the characteristics of consumers in the Japanese and South Korean markets. As the largest milk-producing state and the supplier of 7.5% of total U.S. dairy exports, California’s economic activity greatly affects the rest of the nation and the world. The trends in the California dairy industry include increasing total milk production and per-cow milk production, a diminishing number of total dairy operations, and a rising number of large dairy operations. These …

Birds Of The Central Platte River Valley And Adjacent Counties, Mary Bomberger Brown, Paul A. Johnsgard

Zea E-Books Collection

The central Platte River Valley region of Nebraska is described ecologically, and defined as encompassing 11 counties and nearly 10,000 square miles, and extending about 120 miles from the western edge of Lincoln County to the eastern edge of Merrick County. At its center is the Platte River, the historic spring staging area for Sandhill and Whooping cranes, five species of geese, and millions of waterfowl and water-dependent birds, in addition to providing the breeding habitats for more than 100 other bird species. Collectively, at least 373 bird species have been reported from the Central Platte Valley, making it the …

Effects Of Plant Phenology And Vertical Height On Accuracy Of Radio-Telemetry Locations, Troy Grovenburg, Christopher N. Jacques, Robert W. Klaver, Christopher S. Deperno, Chad P. Lehman, Todd J. Brinkman, Kevin A. Robling, Susan P. Rupp, Jonathan A. Jenks

Natural Resource Management Faculty Publications

The use of very high frequency (VHF) radio-telemetry remains wide-spread in studies of wildlife ecology andmanagement. However, few studies have evaluated the influence of vegetative obstruction on accuracy in differing habitats with varying transmitter types and heights. Using adult and fawn collars at varying heights above the ground (0, 33, 66 and 100 cm) to simulate activities (bedded, feeding and standing) and ages (neonate, juvenile and adult) of deer Odocoileus spp., we collected 5,767 bearings and estimated 1,424 locations (28-30 for each of 48 subsamples) in three habitat types (pasture, grassland and forest), during two stages of vegetative growth (spring …

The Advertisement Call Of The Poorly Known Leptodactylus Tapiti (Anura, Leptodactylidae), Reuber Albuquerque Brandão, Guilherme Fajardo Roldão Álvares, Rafael O. De Sá

Biology Faculty Publications

The genus Leptodactylus consists of approximately 80 species distributed in four nominal groups (Frost 2011). The fuscus group harbors approximately 30 small species with terrestrial nests, deposited in male built burrows on soft soils. Leptodactylus tapiti Sazima & Bokermann 1978 was described from Veadeiros, currently Alto Paraíso municipality, Goiás State, Brazil. The species is restricted to the region of Chapada dos Veadeiros (Frost 2011), where it occurs in areas of water-saturated soils associated with open fields (Sazima & Bokermann 1978). Since its original description, nothing was published about the species, and its advertisement call remains unknown. Herein, we describe its …

Mammoth Cave National Park Backcountry Trail And Stream Monitoring, 2009-2012, Larry Johnson, Student Conservation Association Conservation

Mammoth Cave Research Symposia

This project conducted an assessment of backcountry trail conditions on the north side of the Green River in Mammoth Cave National Park during summers of 2009-2012. The project included assessing physical parameters of trails, (width, depth, etc.) and conducting an assessment of water quality of streams in proximity of backcountry trails. The project was conducted by Student Conservation Association resource assistants (12 weeks each) supervised by a natural resource specialist from the Mammoth Cave Division of Science and Resources Management. Trail assessment procedures were based on techniques developed by Jeff ery L. Marion, Ph.D, USGS, Virginia Tech (et al.) and …

Use Of Sorption Isotherms To Improve The Efficacy Of The Storm-Water Filters, Hung-Wai Ho, Rick Toomey

Mammoth Cave Research Symposia

Sorption has been widely used as an inexpensive and environmental friendly water treatment technology. A large variety of adsorbents with different adsorption mechanisms have drawn interests, and combinations of adsorbents will enhance sorption of mixed solutions. However, current sorption research tends to focus on single material. The objective of this study was to develop sorption isotherms for ZPG®, (Zeolite, Perlite, Granular Activated Carbon), used in a stormwater filter cartridge. Contaminants of concern include Cu2+ and quaternary ammonia compounds (QAC). Adsorption isotherms were established for Cu2+ and QAC, and the best fit for the isotherm data was a Langmuir isotherm for …

Potential Effects Of Hydrogen Sulfide And Hydrocarbon Seeps On Mammoth Cave Ecosystems, Rick Olson

Mammoth Cave Research Symposia

Recently, Mammoth Cave Guide Bruce Hatcher reported what appeared to be contaminated water seeping into Marianne’s Pass. I visited the site and concluded that it was not likely due to pollution, and that it was a natural phenomenon. To be sure, I sampled the water for fecal coliform and E. coli analyses since sewer lines are in the area. The results were <1 mpn/100ml in both cases. A sulfur spring is mentioned at this site in Rambles in the Mammoth Cave, which was published in 1845, and this predates any well drilling that could lead to hydrocarbon and sulfide pollution. Another line of evidence that the seeps are natural is that they are all deeply weathered into the bedrock, which takes a long time. The seeps support thousands of springtails, which feed on the microbial mats, and crickets are common as well. A possible effect on biodiversity will be discussed.

Antibiotic Resistance And Substrate Utilization By Bacteria Affi Liated With Cave Streams At Diff Erent Levels Of Mammoth Cave, Petra Byl, Shannon R. Trimboli, Rick Toomey, Jacob Byl, David Solomon, Tom Byl

Mammoth Cave Research Symposia

Located in south-central Kentucky, Mammoth Cave is one of the most unique National Parks in the United States. The surface landscape includes complex relationships between the flora and fauna along with human influences. However, the primary ecological focus is concealed below ground. Over four-hundred miles of cave passages, created by fl owing groundwater over millions of years, host a variety of macro and micro organisms. The Green River has cut into the limestone formation over geologic time, creating a complex network of passages that are stacked, one below the other, with the newer levels of cave lying near the bottom. …

History Of Crawling Tours At Mammoth Cave, Janet Bass Smith

Mammoth Cave Research Symposia

Currently three crawling tours are offered at Mammoth Cave: Wild Cave (six hours) for visitors ages sixteen and older, Introduction to Caving (three hours and 15 minutes) for visitors ages 10 and older (under 18 must be with an adult), and Trog (two hours and 30 minutes) for children only, ages eight through twelve. These tours are discussed in detail below. Maps for each tour are included at the end of the paper. This history relates the beginnings of each tour.

Evaluation Of Stormwater Filters At Mammoth Cave National Park, Kentucky, 2011-12, Sean Mcmillian, Ashley West, David Solomon, Roger Diehl, Victor Roland, Irucka Embry, Rick Toomey

Mammoth Cave Research Symposia

Studies in the 1970s found potentially toxic levels of metals entering Mammoth Cave’s underground streams through storm recharge. Additional studies confirmed that stormwater from parking lots and buildings fl owed rapidly into critical cave habitats. The Park’s management responded to these findings by installing storm runoff filter systems on the most heavily used parking lots in 2001. The Park entered an agreement (2010-12) with Tennessee State University, the USGS, and WKU-Mammoth Cave International Center for Science and Learning to evaluate the filter systems to determine if they were removing hazardous compounds from stormwater runoff . The objective of this study …

Effects Of Prescribed Fire On Mammoth Cave National Park’S Oak-Hickory Vegetation, Jesse A. Burton

Mammoth Cave Research Symposia

Mammoth Cave National Park contains a spectacular suite of plant communities; many of which are dependent on wildland fire as a disturbance process for their preservation. Over a third of the park is dominated by oak-hickory forests and woodlands. Fire is a fundamental process in the development and maintenance of this important community type. Since the park’s first prescribed fire in 2002, 16,700 acres of forest, woodlands, and barrens have been treated with prescribed fire. Initial goals for the prescribed fires were to reduce the density of tree saplings in the understory and increase the cover of herbaceous herbs in …

Decadal Variation In Egg Abundance Of A Mesopelagic Fish, Maurolicus Japonicus, In The Japan Sea During 1981-2005, Tadanori Fujino, Tsuneo Goto, Tsuyoshi Shimura, Hiroki Yasuma, Yongjun Tian, Hideaki Kidokoro, Shinya Masuda, Kazushi Miyashita

Journal of Marine Science and Technology–Taiwan

Egg abundance of Maurolicus japonicus, a dominant mesopelagic fish in the Japan Sea, was analyzed during 1981-2005 as an index of the spawning-adult abundance. There was a major change in egg abundance around 1988/1989, with negative anomalies occurring during 1981-1988 and positive anomalies occurring from l989. At about the same time (1986/1987), the Tsushima Current shifted from cold to warm conditions. Environmental indices were found to be positively correlated with egg abundance two years later. Our results suggest that the abundance of M. japonicus is affected by climatic regime shifts, and that it could be used as an indicator species.

Purification And Characterization Of Acidic Protease From Aspergillus Oryzae Bcrc 30118, Li-Jung Yin, Ya-Hui Chou, Shann-Tzong Jiang

Journal of Marine Science and Technology–Taiwan

The acidic protease was purified from 4-day cultivation of Aspergillus oryzae BCRC 30118 by DEAE Sephacel and Sephacryl S-200 HR chromatographs. The specific activity, yield and purification fold were 117.62 kU/mg, 15.1% and 6.6, respectively. The molecular weight (M) was 41.0 kDa, while the optimal pH and temperature were 3.0 and 60°C, respectively. It was stable at pH 3.0-6.0 and 4-35°C. However, it was inhibited by Fe2+, Hg2+, Fe3+ and pepstatin A, and slightly by leupeptin and TPCK. According to substrate specificity and inhibitor study, it was a cysteine protease with activation energy of 37.5 kcal/mol. Its Km, Vmax, Kcat …