Digital Commons Network^™

Testing The Feasibility Of Bioacoustic Localization In Urban Environments, Blaire O'Neal

USF Tampa Graduate Theses and Dissertations

Bioacoustics is a relatively new field of research focused on studying the acoustic signals of vocal animal species. The field has been a topic of interest for many years due its passive approach and avoidance of species-level limitations, such as tracking rare or nocturnal species. It has been used to locate birds in terrestrial environments; however, localization in urban environments remains unstudied. This research aims to fill the gap by attempting to estimate the location of 30 discrete calls in eight unique, urban environments. Sites represented two distinct traffic scenarios: moderate traffic and high traffic. Three system arrays of three …

Evolutionary Relationships Of The Critically Endangered Frog Ericabatrachus Baleensis Largen, 1991 With Notes On Incorporating Previously Unsampled Taxa Into Large-Scale Phylogenetic Analyses, Karen Siu-Ting, David J. Gower, Davide Pisani, Roman Kassahun, Fikirte Gebresenbet, Michele Menegon, Abebe A. Mengistu, Samy A. Saber, Rafael O. De Sá, Mark Wilkinson, Simon P. Loader

Biology Faculty Publications

Background: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious.

Results: We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and …

P-26 Hawksbill Turtle (Eretmochelys Imbricata) Density And The Effect Of Pollution Debris On The Crawling Rates Of Hawksbill Hatchlings In Utila, Honduras, Kyungje Sung, Stephen Dunbar, H. Thomas Goodwin

Honors Scholars & Undergraduate Research Poster Symposium Programs

The hawksbill turtle (Eretmochelys imbricata) is a critically endangered species. Hence, various conservation efforts by groups such as ProTECTOR are taking place to stabilize its population. To support such efforts, my study focused on the turtle population in and around the island of Utila, Honduras. Specifically, I examined the critical migration period of hawksbill turtle hatchlings from nest to water to determine if various densities of plastic pollution had an effect on crawling times. A reduction in crawling time is critical for it could increase predation time. Furthermore, the pollution debris may deter movement, causing the hatchling to …

P-28 The Prevalence Of Encysted Toxoplasma & Sarcocystis In Consumer-Grade Pork, Beef, And Mutton In Michiana, Ross Trecartin

Honors Scholars & Undergraduate Research Poster Symposium Programs

Commonly present in the muscle of animals are the tissue cysts of Toxoplasma and Sarcocystis. The aim of this study was to determine the presence and levels of Toxoplasma/Sarcocystis tissue cysts in retail pork, beef, and mutton throughout the Michiana area. A total of 36 samples, 12 from each species, were exposed to a digestive solution mimicking stomach conditions. The solution consisted of Pepsin 0.75% , NaCl 0.86%, and HCl adjusted to a pH of 1-2. The digested samples were then strained through several layers of cheesecloth, centrifuged, and examined for the presence of parasites.

Soy Products With Reduced Levels Of Sulfite, Free Radicals And Methanethiol, William L. Boatright

Animal and Food Sciences Faculty Patents

Soy products or compositions are treated with a food grade iodate compound or a cystine compound to reduce levels of methanethiol, sulfites and sulfite free-radicals, sulfate free radicals and other free radicals generated from sulfite free radicals in the soy products or compositions by 1% to 95%.

Effects Of Covering System, Sealing Time, And Packing On Fermentation, Nutritional Quality, And Organic Matter Loss Of Corn Silage In A Drive-Over Pile, Katie Rose Nutcher

Dairy Science

This project involved an experiment conducted using a 550-ton capacity drive-over pile of whole-plant corn silage. The main effects compared were: packing the final forage surface with a loader or crawler, delay or immediate sealing, and covering with standard plastic or an oxygen barrier film.

Numerous studies have shown that the absence of oxygen in silage stored in a bunker silo or pile is crucial for proper fermentation and to ensure the highest quality silage at feed out. When oxygen is allowed to permeate through the covering material, it leads to visible spoilage. This trial showed that the oxygen barrier …

Best Management Practices For Raising Dairy Calves From Birth To Weaning, Alexa Cabral

Dairy Science

There are many different ways to raise calves on dairy farms in the United States. The way calves are raised can depend on the resources, natural environment and operation of the farm. There is no right or wrong way to raise calves. However, the aim of raising calves is to find the best way to raise a healthy calf so that she will become a productive cow. The objective of this literature review was to determine the ideal management practices for raising a healthy calf from birth to weaning. This literature analyzed numerous articles that covered all aspects of calf …

Preparing Samples Of Rancid Milk For Milk Judging Contests, Danielle Li

Dairy Science

Due to the growing concern of raw milk, there is a growing need for other methods of preparing rancid milk for milk judging. The origin of rancidity in milk is due to lipolysis caused the lipase enzyme. However, with pasteurization, the lipase enzyme is inactivated. The purpose of this experiment was to compare the effect of using lipase powder to other current methods of preparing rancid milk, such as utilizing raw milk. Result showed that all treatments caused desired rancidity. The second purpose was to compare the rancidity between Method A, two to three hour incubation at room temperature, and …

Development Of Applied Standard Operating Procedures And Monitoring Practices, Nick Southfield

Dairy Science

Development of a standard operating procedure program for Southfield Dairy was chosen in order to improve the work environment and animal health with an underlying goal to improve profitability. Critical control points for the milk barns, maternity barn and calf barn on the dairy, were identified as being critical to the production of quality milk, both for sale and calf feed. Data recording implementation through identification of recordable data, equipment purchases, and log sheet production, was done so to increase relevant information available for veterinary services and specialty consultants. Implementation of procedural documents and training programs are discussed to see …

Updated Ethography For European Starlings (Sturnus Vulgaris) In Central Coast Vineyards, Vic A. Guerrero

Wine and Viticulture

No abstract provided.

Using Progesterone As An Indicator Of Ovarian Response To Stimulation In Cattle, Kayla Mariah Kauffman

Animal Science

No abstract provided.

The Implications Of Global Warming Upon United States Dairy Herds: Effects On The Economics Of Dairying And Stability Of Herds With Low Genetic Diversity, Lauren Lusby

Dairy Science

Global warming (GW) is of real concern for the current U.S. agricultural industry. The agricultural industry has had a hand in emitting into the atmosphere. Severe heat spells seen nationwide and volatile climate shifts have pushed states such as California to implement governmental support to high impact areas due to dwindling water sources. Motivated dairy industry members have created plans to reduce dairy GHE contribution. Some research has suggested a benefit in GHG emissions from fewer cow-higher production approaches to dairy farmers. Most U.S. dairy cattle are specialized due to high inbreeding values created by selecting for few production traits …

Fallow Bucks Attend To Vocal Cues Of Motivation And Fatigue, Benjamin J. Pitcher, Elodie F. Briefer, Elisabetta Vannoni, Alan G. Mcelligott

Sentience Collection

Vocalizations encode a range of information about the caller, and variation in calling behavior and vocal structure may provide listeners with information about the motivation and condition of the caller. Fallow bucks only vocalize during the breeding season and can produce more than 3000 groans per hour. Males modulate their calling rates, calling faster when other calling males and/or females are nearby. Groans also reveal caller fatigue, becoming shorter and higher pitched toward the end of the rut. Thus, fallow deer groans vary both over very short (minute to minute) and longer timescales (the rut). However, no studies have investigated …

Learning And Memory In The Port Jackson Shark, Heterodontus Portusjacksoni, Tristan L. Guttridge, Culum Brown

Sentience Collection

Basic understanding of the fundamental principles and mechanisms involved in learning is lacking for elasmobranch fishes. Our aim in this study was to experimentally investigate the learning and memory capacity of juvenile Port Jackson sharks, Heterodontus portusjacksoni. Sharks (N = 30) were conditioned over a 19-day period to associate an underwater LED light or stream of air-bubbles [conditioned stimulus (CS)] with a food reward [unconditioned stimulus (US)], using three procedures (delay, trace and control). During experiments, the CS signalled at a random time between 180 and 300 s for 30 s (six times per day). For the delay the US …

Identifying Factors Affecting The Low Western Rock Lobster Puerulus Settlement In Recent Years Final Frdc Report – Project 2009/18, Nick Caputi, Ming Feng, Simon De Lestang, Ainslie M. Denham, James D. Penn, Dirk Slawinski, Alan Pearce, Evan Weller, Jason R. How

Fisheries Research Reports

Objectives 1. To use a larval advection model and the rock lobster population dynamics model to assess the effect of the spatial distribution of the breeding stock on the puerulus settlement 2. To assess environmental factors (water temperature, current, wind, productivity, eddies) and breeding stock affecting puerulus settlement 3. To examine climate change trends of key environmental parameters and their effect on the western rock lobster fishery

Potential Eradication And Control Methods For The Management Of The Ascidian Didemnum Perlucidum In Western Australia, Julieta Muñoz, Justin I. Mcdonald

Fisheries Research Reports

In Western Australia, the invasive colonial ascidian Didemnum perlucidum was first detected in the Swan River Estuary in 2010 and subsequently recorded at multiple locations across the State. Ongoing research by the Department of Fisheries (the Department) indicates that this species exhibits strong seasonal changes in abundance. Although, D. perlucidum is able to reproduce sexually (larvae) and asexually (budding) year round, larvae density and settlement, and overall colony size significantly decreases during the colder months (winter). From a management point of view this period would present the best opportunity for an attempt at eradication or control of this species.

Fire Severity And Size Alter Quaking Aspen (Populus Tremuloides) Regeneration And Defense Against Ungulate Herbivory, Ho Yi Wan

Theses and Dissertations

Human activities and rapid global climate change are altering fire regimes with potential threat to the stability of aspen ecosystems in North America. Aspen is an early successional species that plays an important role in post-fire forest reestablishment, but chronic browsing on juvenile aspen by large ungulate herbivores after fire can be detrimental and lead to regeneration failure. Although larger and more severe fires are expected to become more prominent, whether and how this may influence aspen and ungulate communities remains unclear. The objective of this research was to examine how the relationship between aspen and ungulate communities might be …

Parturition Of Mule Deer In Southern Utah: Management Implications And Habitat Selection, Eric D. Freeman

Theses and Dissertations

Mule deer (Odocoileus hemionus) are an ecologically, economically, and socially important species across much of the western United States. As such, populations and habitat are intensely managed by state game agencies. However, populations have been declining in recent decades and several factors have been implicated (e.g., climate, predation, competition, and habitat availability). Population dynamics of mule deer are driven by a combination of survival of adults and juveniles and reproductive rates. While adult female mule deer typically have consistently high annual survival rates (85% annually), juveniles are more easily affected by stressors (biotic and abiotic conditions) and therefore …

Soil Fertility Status And Degradation Of 2, 4, 6-Trinitrotoluene Contaminated Soils, Chelsea Kae Katseanes

Theses and Dissertations

Current models for predicting the environmental fate of munitions constituents (MC) in soils are based mostly on chemical distribution parameters and neglect the larger considerations of other soil parameters. We are working towards a new approach based on the whole soil activity for predicting the long-term residence time and fate of MC in soils with connection to agronomic soil fertility concepts. These relationships are demonstrated by correlating experiments involving full physical and chemical characterization of eight taxonomically distinct soils, with batch reactor studies determining MC degradation potential. Soils were incubated in a slurry for 10 days in a closed reactor …

Effects Of Prey Abundance On Breeding Season Diet Of Northern Goshawks (Accipiter Gentilis) Within An Unusual Prey Landscape, Robert A. Miller, Jay D. Carlisle, Marc J. Bechard

Intermountain Bird Observatory Publications and Presentations

A critical element of diet analysis is species adaptability to alternative prey sources. The breeding-season diet of Northern Goshawks (Accipiter gentilis) includes both mammalian and avian species, varies geographically, and is often dependent upon tree squirrels of the genera Sciurus andTamiasciurus. We studied alternative prey sources of Northern Goshawks in the South Hills of south-central Idaho, an area where tree squirrels are naturally absent and other prey frequently important in the diet of goshawks, such as smaller corvids, are uncommon. We quantified the diet of goshawks using nest cameras and surveyed abundance of prey using line …

Post-Den Emergence Behavior And Den Detection Of Polar Bears (Ursus Maritimus) In Northern Alaska And The Southern Beaufort Sea, Rusty Wade Robinson

Theses and Dissertations

Pregnant polar bears (Ursus maritimus) construct maternal dens out of snow in the autumn where they give birth to and raise altricial young. In recent years, there has been a decrease in polar sea ice extent and thickness, which has led to changes in denning behavior. One such change in the southern Beaufort Sea (SBS) is that polar bears are selecting maternal den sites on land, rather than on unstable sea ice. This change, coupled with expanding petroleum exploration along Alaska's North Slope, heightens the likelihood of bear-human interactions at maternal den sites. The purpose of this research …

The Effects Of Substituting True Protein With Non-Protein Nitrogen In Holstein Dairy Heifers Precision-Fed Different Forage To Concentrate Ratios, Noe Alberto Gomez

Animal Science

Understanding the efficiency and digestibility of dietary nutrients in dairy heifers is essential for minimizing costs and environmental impacts of the dairy industry. The objective of this study was to interpret the effects of manipulating rumen-degradable protein (RDP) in a precision feeding system. Eight Holstein ruminally cannulated heifers (14.6 ± 0.1 mo of age, and 386 ± 9.1 kg of weight) were randomly assigned to 2 forage levels: HC (25% forage) and LC (75% forage) and to a degradable protein sequence [0% degradable protein from urea U, 100% casein C (no urea treatment U0); 33% U, 67% C …

From The Inside Out, And Through., Dominique Ovalle

The Transdisciplinary STEAM+ Journal

These photographs describe “Science” born of consumerism, hijacked by me, economically disenfranchised, or rather—temporarily embarrassed, artist. I was putzing around Malibu—my old college stomping ground, looking for free food; maybe a sample of some gourmet $5 chocolate, and all I got were these photographs.

Stem Art Learning Outcomes, Emily Gottlieb

The Transdisciplinary STEAM+ Journal

No abstract provided.

Averting Lemur Extinctions Amid Madagascar's Political Crisis, Christoph Schwitzer, Russell Mittermeier, Steig Johnson, Giuseppe Donati, Mitchell Irwin, Heather Peacock, Jonah Ratsimbazafy, Josia Razafindramanana, Edward E. Louis, Lounes Chikhi, Ian C. Colquhoun, Jennifer Tinsman, Ranier Dolch, Marni Lafleur, Stephen Nash, Erik Patel, Blanchard Randrianambinina, Tove Rasolofoharivelo, Patricia C. Wright

Anthropology Publications

The most threatened mammal group on Earth, Madagascar’s five endemic lemur families (lemurs are found nowhere else), represent more than 20% of the world’s primate species and 30% of family-level diversity. This combination of diversity and uniqueness is unmatched by any other country—remarkable considering that Madagascar is only 1.3 to 2.9% the size of the Neotropics, Africa, or Asia, the other three landmasses where nonhuman primates occur. But lemurs face extinction risks driven by human disturbance of forest habitats. We discuss these challenges and reasons for hope in light of site-specific, local actions proposed in an emergency conservation action plan.

The Flea Family Tree: Phylogeny Of The Order Siphonaptera Based On 18s Rdna, 28s Rdna, Elongation Factor-1alpha, And Cytochrome Oxidase Ii Gene Regions, Alison Swindle, Dr. Michael F. Whiting

Journal of Undergraduate Research

Fleas are laterally compressed, wingless insects with small helmet shaped heads, and mouthparts specialized for feeding on the blood of their hosts. These morphological specializations make it possible for fleas to be entirely ectoparasitic, but they also make it difficult to find distinguishing characters on which to base taxonomy above the generic level (Holland, 1964). The highly derived state of flea morphology has resulted in questionable classification within the order, and lack of solid support for any group as the sister taxon to fleas. To this point there has been no molecular study that has considered fleas below the ordinal …

The Effects Of Interleukin-1a, Interleukin-6 And Tumor Necrosis Factor- A On The Growth Of Human H295r Cells, Tara Leigh Nelson, Dr. Allan M. Judd

Journal of Undergraduate Research

Cytokines are extracellular signaling proteins or peptides that act as local mediators in cell-cell communication. They regulate several endocrine systems and function in the immune process. These agents mediate cellular proliferation within endocrine tissues, regulate hormone secretion, and control aspects of inflammation (1). Interleukin-1a (IL- 1a), IL-6 and tumor necrosis factor-a (TNF-a) are present in normal adrenal glands of rats, bovine and humans. They stimulate and inhibit adrenal hormones. Growth and differentiation of the adrenal gland may also be affected by cytokines. The study of the effects of these cytokines is important because adrenal tumors may cause hypersecretion of the …

Phylogenetic Analysis Of Crayfish Using Astacin, Crystal Komm, Dr. Keith A. Crandall

Journal of Undergraduate Research

Astacin is a zinc-endopeptidase, originally described as a unique enzyme and first sequenced from the crayfish Astacus astacus (Geier 97). This project aimed to gather several Astacin gene sequences from multiple taxa of crayfish and to submit them to phylogenetic analysis using PAUP (Swofford 98). PAUP would then generate trees displaying the most probable evolutionary relationships among taxa based on variation in the Astacin gene sequences.

Independent Murine Biosynthesis Of Threonine: Expression Of A Complete Bacterial Biosynthetic Pathway In Mice, Ryan D. Mcallister, Dr. David Kooyman

Journal of Undergraduate Research

Threonine is one of the 20 common amino acids found in nature. It is a limiting factor for the growth of many non-ruminant animals such as swine and mice and must be obtained from their diet. When threonine is absent from the diet of these animals, the other amino acids present cannot be fully utilized. The result is poor conversion of plant to animal protein (1). We proposed producing transgenic mice using the genes from the known five-step bacterial pathway for threonine synthesis (2). The introduction of these bacterial pathways to mice would eliminate the need for dietary supplementation of …

Archaeological Data Provide Alternative Hypotheses On Pacific Herring (Clupea Pallasii) Distribution, Abundance, And Variability, Iain Mckechnie, Dana Lepofsky, Madonna L. Moss, Virginia L. Butler, Trevor J. Orchard, Gary Coupland, Frederick Foster, Megan Caldwell, Ken Lertzman

Anthropology Faculty Publications and Presentations

Over the last century, Pacific herring, a forage fish of tremendous cultural, economic, and ecological importance, has declined in abundance over much of its range. We synthesize archaeological fisheries data spanning the past 10,000 y from Puget Sound in Washington to southeast Alaska to extend the ecological baseline for herring and contextualize the dynamics of modern industrial fisheries. While modern herring populations can be erratic and exhibit catastrophic declines, the archaeological record indicates a pattern of consistent abundance, providing an example of long-term sustainability and resilience in a fishery known for its modern variability. The most parsimonious explanation for the …