Digital Commons Network^™

Individual Beef Cattle Identification Using Muzzle Images And Deep Learning Techniques, Guoming Li, Galen E. Erickson, Yijie Xiong

Department of Animal Science: Faculty Publications

The ability to identify individual animals has gained great interest in beef feedlots to allow for animal tracking and all applications for precision management of individuals. This study assessed the feasibility and performance of a total of 59 deep learning models in identifying individual cattle with muzzle images. The best identification accuracy was 98.7%, and the fastest processing speed was 28.3 ms/image. A dataset containing 268 US feedlot cattle and 4923 muzzle images was published along with this article. This study demonstrates the great potential of using deep learning techniques to identify individual cattle using muzzle images and to support …

Impacts Of Added Roughage On Growth Performance, Digestibility, Ruminal Fermentation, And Ruminal Ph Of Feedlot Steers Fed Wheat-Based Feedlot Diets Containing 30% Modified Distillers Grains With Solubles, Wayde J. Pickinpaugh, Bryan W. Neville, Rebecca L. Moore, Joel S. Caton

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Two experiments were conducted to evaluate the inclusion rate roughage in wheat-based diets containing modified distillers grains with solubles (MDGS) on feedlot performance (Feedlot Experiment), as well as digestibility, ruminal pH, and ruminal fermentation characteristics (Digestibility Experiment). The feedlot experiment utilized 72 Angus steers (392 ± 46.3 kg initial body weight) which were randomly assigned to 1 of 12 pens, 3 pens per treatment, to evaluate feedlot performance and carcass characteristics. Dietary treatments were 1) control; 10% roughage, 2) 12% roughage, 3) 14% roughage, and 4) 16% roughage. The digestibility experiment used four ruminally and duodenally cannulated steers (393 ± …

A Comprehensive Bison Management And Research Plan For The Crane Trust, Joshua D. Wiese

Other Publications in Wildlife Management

The Great Plains were once a vast grassland ecosystem, but, due to agricultural and human development, are one of the most endangered ecosystems in North America. What remains is generally fragmented, threatened by invasive species, and lacks the natural ecosystem processes that shaped these grasslands such as periodic wildfire and bison grazing. Since 1978, the Platte River Whooping Crane Maintenance Trust, Inc. (dba “Crane Trust”) has worked to maintain the function of grassland and riparian habitats to benefit endangered Whooping Cranes, Sandhill Cranes, and other migratory bird species. They protect ~8,100 acres, including the largest contiguous portion of lowland tallgrass …

Effects Of Sunrise/Sunset Lighting On Corticosterone Levels In Coturnix Quail (Coturnix Coturnix), Hannah Feuerborn

Poultry Science Undergraduate Honors Theses

Both genetics and environment play an important role in the growth, performance and overall welfare of poultry species. Current commercial production practices typically do not mimic the natural environmental conditions of ancestral poultry species, specifically lighting requirements. In nature, poultry species are subjected to natural day length and the slow rising and setting of the sun. This is compared to commercial conditions in which lights are sudden on/off, not mimicking the natural trajectory of the sun in terms of light intensity and exposure. The current study aimed to evaluate the impact of genetics and the effect of sunrise/sunset lighting on …

The Relationship Between People And The Tegu: A Review Of The Literature, Jordan Haley

Honors College Theses

This thesis will explore the relationship humans have had with tegu lizards and how it has evolved over time, from their historical use as a source of leather and bushmeat in South America to their more recent rise in the pet trade and consequential establishment as an invasive species in the United States.

Broiler Efficiency As Affected By Dietary Protein Supply And Grain Source, Victoria Reid

Animal Science Undergraduate Honors Theses

This experiment was conducted to compare the effects of different diet compositions on performance and carcass yield of male broilers from 15 to 36 days of age. In total, 593 male birds were divided across a randomized design that consisted of 6 dietary treatments, each with 8 replications. The treatments included pelleted diets that varied in grain type and crude protein (CP) value: 3 sorghum-based diets at 20%, 18.75%, and 17.5% CP and 3 corn-sorghum blended diets at the same CP levels. CP amounts impacted only body weight gain and feed conversion rate while feed intake only differed with grain …

Effects Of Retail Case Environment And Led Lighting Temperature On Color And Oxidation Of Previously Frozen Ground Beef Patties, Devin Elaine Whiteside

Animal Science Undergraduate Honors Theses

The purpose of this study was to investigate different environments of retail cases and LED lighting temperatures to observe how these conditions affect oxidation of previously frozen ground beef patties. Coarse ground beef (85% lean) was purchased from a commercial beef processor, fine ground through a 10 mm grinder plate, and then formed into 1/3-pound patties with an automatic patty forming machine. Patties were then randomly assigned to four different treatments: open-front display cases with 3000 K lighting (OPEN3000), open-front cases 3500 K lighting (OPEN3500), reach-in door display with 3000 K lighting (CLOSED3000), and reach-in door display at 3500 K …

Effect Of Larval Rearing Environment On Female Bicyclus Anynana Mate Choice, Adriana Beruvides

Biological Sciences Undergraduate Honors Theses

Around eighty percent of animals go through metamorphosis or drastic phase changes at some point in their life. We know that juvenile interactions can influence adult behavior and mate choice in species that don’t go through metamorphosis, but we know very little about how social interactions during early life stages of animals who go through metamorphosis affect mate choice. To fill this knowledge gap, I used the butterfly Bicyclus anynana to assess whether female butterflies raised in complete isolation from the beginning of their lives exhibit the same mate preference as butterflies raised in normal social conditions. To test this, …

Effects Of Cottonseed Meal Containing Gossypol On Testis Physiology In Boars, Kristin Ryan

Animal Science Undergraduate Honors Theses

Feral hogs are an invasive species found in 35 U.S. states without an effective control method to limit their population growth. According to a 2019 survey of 467 landowners in Arkansas, feral hogs caused an estimated $12 million in damages (Cook, 2019). While there are current control methods such as hunting and trapping, 65% of the feral hog population must be eliminated in a specific area to prohibit population growth (Cook, 2019). It is theorized that gossypol, a phenolic compound known to negatively impact reproductive function in other species, could cause sterility in boars. In this preliminary research study, 21 …

Behavior And Immune Response Of Conventional And Slow-Growing Broilers To Salmonella Typhimurium, Ashlyn M. Snyder, Sean P. Riley, Cara I. Robison, Darrin M. Karcher, Carmen L. Wickware, Timothy A. Johnson, Shawna L. Weimer

Poultry Science Faculty Publications and Presentations

Fast growth rate in broiler chickens comes with welfare concerns and the contribution of growth rate to pathogen resistance and sickness behavior is relatively unknown. The objective of this study was to evaluate physiological and behavioral responses of conventional (CONV) and slow-growing (SG) male broilers challenged with Salmonella Typhimurium. CONV (n = 156) and SG (n = 156) chicks were raised in a pen with wood litter shavings until day 7 of age, when birds were transferred to 24 isolators (n = 11 chicks/isolator). On day 14 of age, half of the birds (n = 12 …

Experimental Cyclic Heat Stress On Intestinal Permeability, Bone Mineralization, Leukocyte Proportions And Meat Quality In Broiler Chickens, Alessandro Rocchi, Jared Ruff, Clay J. Maynard, Aaron J. Forga, Roberto Señas-Cuesta, Elizabeth S. Greene, Juan D. Latorre, Christine N. Vuong, Brittany D. Graham, Xochitl Hernandez-Velasco, Guillermo Tellez Jr., Victor Petrone-Garcia, Lauren Laverty, Billy Hargis, Gisela Erf, Casey M. Owens, Guillermo Tellez-Isaias

Poultry Science Faculty Publications and Presentations

The goal of this research was to assess cyclic heat stress on gut permeability, bone mineralization, and meat quality in chickens. Two separate trials were directed. 320 day-of-hatch Cobb 500 male chicks were randomly assigned to four thermoneutral (TN) and four cyclic heat stress (HS) chambers with two pens each, providing eight replicates per treatment in each trial (n = 20 chicks/replicate). Environmental conditions in the TN group were established to simulate commercial production settings. Heat stress chickens were exposed to cyclic HS at 35 °C for 12 h/day from days 7–42. Performance parameters, intestinal permeability, bone parameters, meat quality, …

Effects Of Tannin-Free Grain Sorghum Varieties On The Metabolizable Energy, Performance, And Intestinal Health Of Poultry, Alissa Moritz

All Dissertations

The single largest cost of poultry production is the cost of feed, and it is favorable to seek more sustainable, alternative feed ingredients to reduce the competition between human, animal, and industrial users. Grain sorghum is a potential alternative feedstuff to minimize the dependence of corn by the poultry industry. Not only is it nutritionally similar to corn, but it is tolerant to dry, sandy soils, which allows it to grow successfully in arid climates. This is highly desirable because of its potential to alleviate the production pressure of growing other cereal grains like corn that are less tolerant to …

Investigating Molecular Mechanisms Behind Bacterial Chondronecrosis With Osteomyelitis (Bco) Pathogenesis In Modern Broilers, Alison Ramser

Graduate Theses and Dissertations

Bacterial chondronecrosis with osteomyelitis (BCO), a leading cause of lameness in broiler chickens, is characterized by infection, inflammation, and bone attrition. There are currently no effective treatments and positive diagnosis is only possible through necropsy evaluations. Lameness is also a rising animal welfare and economic concern, making prevention and detection of BCO all the more critical. These challenges are exacerbated by a lack of mechanistic understanding of BCO’s etiology. The question I asked during my dissertation was how bacteria induce bone attrition in BCO pathology. My research has shown that mitochondrial dysfunction is characteristic of BCO conditions along with autophagy …

Editorial: Fat Metabolism And Deposition In Poultry: Physiology, Genetics, Nutrition And Interdisciplinary Research, Volume I, Sami Dridi, Craig W. Maynard, Jie Wen, Elizabeth Gilbert

Poultry Science Faculty Publications and Presentations

Editorial on the Research Topic: Fat metabolism and deposition in Poultry: Physiology, Genetics, Nutrition and Interdisciplinary Research, Volume I

Effect Of Cyclic Heat Stress On Hypothalamic Oxygen Homeostasis And Inflammatory State In The Jungle Fowl And Three Broiler-Based Research Lines, Giorgio Brugaletta, Elizabeth Greene, Alison Ramser, Craig W. Maynard, Travis Tabler, Federico Sirri, Nicholas B. Anthony, Sara K. Orlowski, Sami Dridi

Poultry Science Faculty Publications and Presentations

Heat stress (HS) is devastating to poultry production sustainability due its detrimental effects on performance, welfare, meat quality, and profitability. One of the most known negative effects of HS is feed intake depression, which is more pronounced in modern high-performing broilers compared to their ancestor unselected birds, yet the underlying molecular mechanisms are not fully defined. The present study aimed, therefore, to determine the hypothalamic expression of a newly involved pathway, hypoxia/oxygen homeostasis, in heat-stressed broiler-based research lines and jungle fowl. Three populations of broilers (slow growing ACRB developed in 1956, moderate growing 95RB from broilers available in 1995, and …

Oestrogenic Subterranean Clover Guide. Identification And Remediation, Kevin J. Foster, Megan H. Ryan, Daniel R. Kidd

Bulletins 4000 -

Subterranean clover (subclover, Trifolium subterraneum L.) is an annual pasture legume that provides high quality feed for livestock. It is estimated to be sown over 30 million hectares across southern Australia, with cultivars developed for the low, medium and high rainfall zones. Unfortunately, some older cultivars contain high levels of phytoestrogen which can affect the reproductive system of sheep and cause other health issues. This became a significant issue for sheep producers from the 1940s as new land was cleared and sheep grazed subclover-dominant pastures. There was a collection of livestock issues observed and these were grouped together under the …

The Effects Of Poor Maternal Nutrition During Gestation In Sheep On The Reproductive Efficiency Of The Offspring, Morgan Dougherty

Honors Scholar Theses

Poor maternal nutrition during gestation negatively impacts fetal programming and the development of the hypothalamic-pituitary-ovarian axis in the offspring. Reproductive health of ewes can be characterized by concentrations of reproductive hormones including follicle stimulating hormone (FSH), luteinizing hormone (LH), and progesterone, particularly during the estrous cycle. We hypothesized that ewes born to dams that experienced poor maternal nutrition during gestation would have reduced reproductive capability and efficiency. This means that they would take longer to become pregnant and have reduced concentrations of reproductive hormones compared with those born to mothers fed the control diet. Pregnant dams (F0) were fed one …

Harvester Ant (Pogonomyrmex Sp.) Seed Preferences And Distribution In A Suburban Setting, Lilly V. Elliott

Theses and Dissertations

Harvester ants (Pogonomyrmex sp.) are omnivorous ants native to Texas and are the main food source for the threatened Texas Horned Lizard (Phrynosoma cornutum). Little research has been conducted on harvester ants in the Lower Rio Grande Valley (LRGV) and their interactions with their environment. For this purpose, a variety of experiments were conducted to better understand these interactions and preferences. In CHAPTER I, suburban harvester ants were exposed commonly used cover crop seeds in the LRGV and inoculated seeds via seed depots over the course of 24 hours. We found that harvester ants do …

Possible Surf And Turf Mutualism: The Potential Of Yeast Grown From Maine Wood As Feed For Atlantic Salmon, Gina Scott

All Theses And Dissertations

With fed aquaculture expanding, challenges are being faced with increasing demands for protein for feed. Fishmeal as a protein is at high cost and low supply, and meals from terrestrial agriculture can impact fish health; both also generate environmental challenges. One potential alternative protein is yeast, which can be grown using waste softwood. Simultaneously, Maine forestry has lost buyers of waste wood with several paper mill closures. If yeast is produced as an alternative protein for fish feed using this wood, both Maine Atlantic salmon farming, Maine’s most valuable form of aquaculture, and Maine forestry could benefit. Environmental impact and …

Targeting Inflammation In Heat-Stressed Wethers Improves Growth And Efficiency And Alters Body Composition: A Brief Exploration And Application Of Extension Principles, Micah Samuel Most

Department of Animal Science: Dissertations, Theses, and Student Research

The objective of our first study was to determine how administering anti-inflammatory dexamethasone and ω-3 polyunsaturated fatty acid (PUFA)-rich fish oil affects growth efficiency and body composition in heat-stressed finishing lambs. Commercial wethers were randomly assigned to be fed under heat stress (35-40 ℃) or thermoneutral (19 ℃, n = 10) conditions for 30 d, and controls were pair-fed to eliminate differential feed intake. Heat-stressed wethers were randomly assigned to receive clinical-dose dexamethasone IM injections every 72 h, twice daily fish oil capsule oral boluses, or placebos. Heat stress decreased (P < 0.05) growth and efficiency, but dexamethasone and fish oil supplementation recovered these performance measures. Heat stress also decreased (P < 0.05) predictive body composition metrics that were at least partially improved by administration of dexamethasone and fish oil. Proximate analyses of muscles showed that heat stress decreased (P < 0.05) percentage of protein and increased (P < 0.05) percentage of intramuscular fat, neither of which was improved by dexamethasone or fish oil. Immunohistochemistry revealed that heat stress decreased (P < 0.05) myoblast differentiation and muscle fiber size, but anti-inflammatory supplementation recovered differentiation only. Plasma IGF-1 concentrations were not different among groups throughout the study. These findings demonstrate how heat stress-induced inflammation contributes to impaired growth, efficiency, and body composition observed in heat-stressed feeder lambs. However, targeting inflammation with dexamethasone or fish oil recovers many of these deficits.

The Cooperative …

Evaluation Of Corn Processing Method And Sweet Bran Inclusion On Beef Cattle Performance And Nutrient Digestion And Individual Sweet Bran Components On Nutrient Digestion, Rebecca L. Sjostrand

Department of Animal Science: Dissertations, Theses, and Student Research

One feedlot trial (Exp. 1) and one digestion trial (Exp. 2) were conducted to evaluate the interaction of corn processing method and Sweet Bran inclusion on nutrient digestion, ruminal fermentation parameters, and feedlot performance. In Exp. 1 when no Sweet Bran was fed, cattle fed steam-flaked corn (SFC) had greater ADG, HCW and a 12.4% improvement in feed efficiency compared to cattle fed a high-moisture corn/ dry-rolled corn (HMC/DRC) blend. However, as Sweet Bran increased in the diet to 40%, cattle fed HMC/DRC had greater improvements in ADG and HCW than cattle fed SFC resulting in similar performance at 40% …

Evaluation Of Grazing Techniques As A Nutrition Source For Horses In A Pasture Environment, Brittany Perron

All Dissertations

Horses require daily access to forage in order to support their gastrointestinal tract function as well as natural grazing behaviors. Well-managed pasture provides horses with a consistent forage source and diminishes health risks such as colic, ulcers and stereotypies. However, equine grazing behaviors are more intense than other livestock and may be detrimental to plant and soil health. A grazing management technique specifically for horses is necessary to prevent both health and environmental issues. The following dissertation explores both the movement of required maintenance elements, such as feed, shelter, and water, as well as the manipulation of feeding frequency and …

Effects Of Providing Novel Feedstuffs To Livestock On Production And Skeletal Muscle Growth, Laura A. Motsinger

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As the population increases and available land for food production decreases, it is necessary for livestock producers to continually work towards increasing livestock production efficiency. In livestock operations, feed accounts for the majority of input costs associated with raising livestock. As such, it is necessary to improve growth and production of livestock animals, while also optimizing feed utilization. Different feedstuffs can be included in the diet of livestock animals to maximize growth and production. However, the effects of some of these novel feedstuffs on growth and production of livestock animals has not been elucidated. As such, we investigated the effects …

Greater Sage-Grouse Brood Responses To Livestock Grazing In Sagebrush Rangelands, Hailey Peatross Wayment

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The distribution and abundance of the greater sage-grouse (Centrocercus urophasianus; sage-grouse) have declined in the last 60 years. Range contractions and population declines have been attributed to loss and fragmentation of their sagebrush (Artemisia spp.) habitats. Grazing by livestock remains the predominant anthropogenic land-use across sagebrush ecosystems in North America, occurring on 87% of remaining sage-grouse habitat. Most of the peer-reviewed literature reports the potential for negative impacts of sagebrush reduction treatments, to increase livestock forage, on sage-grouse habitat. However, few studies have linked livestock grazing at the landscape level to vital rates (e.g., nest initiation rates, …

Impact Of Ph And Palmitic Acid On Ruminal Fermentation And Microbial Community Composition, Lexie Padilla

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The objective of this study was to evaluate the effects of dietary palmitic acid and pH on rumen fermentation, fiber digestibility, and bacterial community composition. The two factors in the experiment were palmitic acid treatment and pH treatment. Palmitic acid treatments included a control diet compared to a diet containing 1.5% palmitic acid. pH treatments included normal pH (6.6 to 7.0) compared to low pH (6.0 to 6.4). Rumen fluid from a cow was added to artificial rumens to study the effects of the two treatments relative to fermentation and changes within the microbial community. Results of the study showed …

A Most Unusual Tail: Scoliosis In A Wild Australian Skink, And Reported Incidences And Suggested Causes Of Similar Malformations Amongst Squamates, Philip W. Bateman, Robyn Benken, Ryan Glowacki, Robert A. Davis

Research outputs 2022 to 2026

Malformations of vertebrae potentially occur across many taxa, particularly in Testudines, which are susceptible to kyphosis (dorsoventral curvature of the spine). Such malformations may stem from either genetic or environmental origins, and their prevalence and associated impacts on survival remain poorly understood. However, scoliosis (sideways curvature of the spine) is rarely reported and especially so in wild lizards. We report here on the first known case of scoliosis in a wild Australian lizard, the skink Ctenotus fallens, from Perth, Western Australia. This occurrence is the first of 805 individuals captured in a natural population monitored annually for the past 11 …

Temporal Dynamics And Seed Dispersal In Plant-Frugivore Communities Of The Dominican Republic, Spencer Christian Schubert

Biological Sciences Theses & Dissertations

Plant-animal mutualisms are a foundational component of biodiversity in terrestrial ecosystems. Most tropical forest plants have adapted to produce fleshy fruits to attract frugivorous animals to disperse seeds. Interaction patterns among plant taxa and their seed dispersers are driven by a complex suite of factors involving their evolutionary history and environmental context, and the structure of these mutualistic networks are theoretically tied to their ecological function. I carried out a series of field studies to investigate the temporal dynamics of mutualistic interactions of plant and avian frugivore communities in the central Dominican Republic and how their characteristics affect seed dispersal …

Evaluating The Microbial Quality And Use Of Antimicrobials In Raw Pet Foods, Leslie Pearl Cancio

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Raw meat-based diets (RMBDs) are emerging pet foods that pose food safety risks because of the potential presence of pathogens that could cause illness to humans. In this research, the microbial quality of select RMBD products sold by pet food companies online and the use of chemical antimicrobials to reduce the microbial load in chicken liver, a common RMBD ingredient, were evaluated.

Ground meat blends and livers from four animal species (beef, pork, chicken, turkey) were purchased from four online companies that delivers directly to consumers through parcel businesses. Products were procured at three different times during one year and …

Effects Of Feeding Probiotics To Pre-Weaned Dairy Calves, Sara Tomis

Honors Scholar Theses

Pre-ruminant calves are particularly susceptible to pathological and environmental stressors that may have negative effects on their health and growth. Supplementing probiotics to this vulnerable population may have positive implications for the dairy industry, as probiotics may encourage improved growth rates and enhanced health in dairy neonates. However, there is variation in existing literature with regard to effectiveness. This study seeks to explore the impact of dietary probiotic supplement on health and growth parameters in pre-weaned dairy calves. Holstein and Jersey calves (n=30) were assigned to 1 of 2 treatment groups, receiving either 0 or 5 grams of probiotic containing …

Accumulation Of Persistent Organic Pollutants In Marine Mammals: A Case Study On Cetaceans, Pinnipeds, And Sirenians, Alydia Moorhead

All HCAS Student Capstones, Theses, and Dissertations

Persistent organic pollutants (POPs) are lipophilic semi-volatile organic chemicals that present a range of challenges to marine biota, specifically marine mammals that often occupy a high trophic position in the food web. POPs have become a global problem since they have been shown to cause immunologic, teratogenic, carcinogenic, neurological, and reproductive complications in living organisms due to their resistance to biodegradation and their lipophilic nature. Marine mammals can accumulate these toxic substances through direct ingestion, trophic transfer, adsorption, and maternal offloading. They are susceptible to both bioaccumulation and biomagnification of POPs. Accumulation of POPs is affected by many variables, including …