Digital Commons Network^™

I. Basic Principles Used In The “Sandhills Calving System” And How They Apply To Other Production Environments, David R. Smith

Range Beef Cow Symposium

Diarrhea is one of the most likely reasons young beef calves become sick or die.(45) Besides its detriment to calf health and well-being, calf scours is costly to cattle producers due to poor calf performance, death, and the expense of medications and labor to treat sick calves. (3, 41) In addition, catching and treating young calves puts herd owners and their employees at risk of injury, and many producers become disheartened after investing long hours to treat scouring calves during an already exhausting calving season.

Calf scours is a complex disease, with many interrelated causes.(1, 2, 37) Agent, host, and …

Initial Sequence And Comparative Analysis Of The Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Agencourt Bioscience Corporation, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, Nisc Comparative Sequencing Program, Stephen J. O'Brien

Biology Faculty Articles

The genome sequence (1.9-fold coverage) of an inbred Abyssinian domestic cat was assembled, mapped, and annotated with a comparative approach that involved cross-reference to annotated genome assemblies of six mammals (human, chimpanzee, mouse, rat, dog, and cow). The results resolved chromosomal positions for 663,480 contigs, 20,285 putative feline gene orthologs, and 133,499 conserved sequence blocks (CSBs). Additional annotated features include repetitive elements, endogenous retroviral sequences, nuclear mitochondrial (numt) sequences, micro-RNAs, and evolutionary breakpoints that suggest historic balancing of translocation and inversion incidences in distinct mammalian lineages. Large numbers of single nucleotide polymorphisms (SNPs), deletion insertion polymorphisms (DIPs), and …

Sheep Updates 2007 - Part 3, Andrew Ritchie, Edward Riggall, James Hall, Gus Rose, Johan Greeff, John Young, M. Alchin, M. Young, T. Johnson, John Lucy, Martin Staines, Tim Wiley, Rob Grima, Sandra Prosser, Matt Ryan, Geoff Moore, Tony Albertsen, Phil Barrett-Lennard, George Woolston, John Titerington, Sarah Knight, Brianna Peake

Sheep Updates

This session covers seven papers from different authors:

PROFITABILITY

1. Benchmarking demonstrates both the potential and realised productivity gains in the sheep and wool industry, Andrew Ritchie, Edward Riggall and James Hall, ICON Agriculture, Darkan

2. Improving sheep genetics will increase farm profitability, Gus Rose, Johan Greeff Department of Agriculture and Food Western Australia, John Young Farming Systems Analysis Service, WA

3. Meat, Merinos and making money in WA Pastoral Zone, M. Alchin, M. Young and T. Johnson, Department of Agriculture and Food Western Australia,

GRAZING

4. Nitrogen - farmers' friend or foe? John Lucy and Martin Staines, Department …

Sheep Updates 2007 - Part 4, Dean Thomas, Dominique Blache, Dean Revell, Hayley Norman, Phil Vercoe, Zoey Durmic, Serina Digby, Di Mayberry, Megan Chadwick, Martin Sillence, David Masters, R. Silberstein, F. Byrne, P. G. H. Nichols, J. Young, L. Aitkins, M. G. Wilmot, A. J. Rintoul, T. Lambert, D. R. Mcclements, P. Raper, P. Ward, C. Walton, T. York, David Pethick, David Hopkins, Malcolm Mcphee, D. B. Savage, J. V. Nolan, I. R. Godwin, A. Aoetpah, T. Nguyen, N. Baillie, C. Lawler, Ken Geenty, John Smith, Darryl Smith, Tim Dyall, Grant Uphill, John Young, Michael Paton, John Dorrian

Sheep Updates

This session covers eight papers from different authors:

GRAZING

1. The impact of high dietary salt and its implications for the management of livestock grazing saline land, Dean Thomas, Dominique Blache, Dean Revell, Hayley Norman, Phil Vercoe, Zoey Durmic, Serina Digby, Di Mayberry, Megan Chadwick, Martin Sillence and David Masters, CRC for Plant-based Management of Dryland Salinity, Faculty of Natural & Agricultural Sciences, The University of Western Australia, WA.

2. Sustainable Grazing on Saline Lands - outcomes from the WA1 research project, H.C. Norman^1,2, D.G. Masters^1,2, R. Silberstein^1,2, F. Byrne^2,3, P.G.H. Nichols …

Sheep Updates 2007 - Part 5, Bindi Murray, John Karlsson, Johan Greeff, Carolina Viñoles Gil, B. L. Paganoni, K. M. M. Glover, J. T. B. Milton, G. B. Martin, Hugh Dove, Bill Mckiernan, John Wilkins, Paul Greenwood, Linda Cafe

Sheep Updates

This session covers six papers from different authors:

GENETIC IMPROVEMENT

1. Breech Strike Resistance: Selecting for resistance traits reduces breech strike, Bindi Murray, John Karlsson, Johan Greeff, Department of Agriculture and Food, Western Australia

2. Breeding Merino Sheep for Worm Resistance increases profit in a Mediterranean Environment, John Karlsson and Johan Greeff Department of Agriculture and Food, Western Australia

FEEDING

3. Embryo lasses were not increased when Merino ewes that had lost weight were supplemented with lupins, C. Viñoles Gil, B.L. Paganoni, K.M.M. Glover, J.T.B. Milton & G.B. Martin, School of Animal Biology, Faculty of Natural and Agricultural Sciences, …

Sheep Updates 2007 - Contents, Department Of Agriculture And Food, Western Australia

Sheep Updates

No abstract provided.

Primate Tnf Promoters Reveal Markers Of Phylogeny And Evolution Of Innate Immunity, Andres Baena, Alan R. Mootnick, James V. Falvo, Alla V. Tsytsykova, Filipa Ligeiro, Ousmane M. Diop, Claudia Brieva, Pascal Gagneux, Stephen J. O'Brien, Oliver A. Ryder, Anne E. Goldfeld

Biology Faculty Articles

Background. Tumor necrosis factor (TNF) is a critical cytokine in the immune response whose transcriptional activation is controlled by a proximal promoter region that is highly conserved in mammals and, in particular, primates. Specific single nucleotide polymorphisms (SNPs) upstream of the proximal human TNF promoter have been identified, which are markers of human ancestry.

Methodology/Principal findings. Using a comparative genomics approach we show that certain fixed genetic differences in the TNF promoter serve as markers of primate speciation. We also demonstrate that distinct alleles of most human TNF promoter SNPs are identical to fixed nucleotides in primate TNF promoters. Furthermore, …

Bird Movement Predicts Buggy Creek Virus Infection In Insect Vectors, Charles R. Brown, Mary Bomberger Brown, Amy T. Moore, Nicholas Komar

School of Natural Resources: Faculty Publications

Predicting the spatial foci of zoonotic diseases is a major challenge for epidemiologists and disease ecologists. Migratory birds are often thought to be responsible for introducing some aviozoonotic pathogens such as West Nile and avian influenza viruses to a local area, but most information on how bird movement correlates with virus prevalence is anecdotal or indirect. We report that the prevalence of Buggy Creek virus (BCRV) infection in cimicid swallow bugs (Oeciacus vicarius), the principal invertebrate vector for this virus, was directly associated with the likelihood of movement by cliff swallows (Petrochelidon pyrrhonota), an amplifying host …

Ecological Correlates Of Buggy Creek Virus Infection In Oeciacus Vicarius, Southwestern Nebraska, 2004, Amy T. Moore, Eric A. Edwards, Mary Bomberger Brown, Nicholas Komar, Charles R. Brown

School of Natural Resources: Faculty Publications

Buggy Creek virus (family Togaviridae, genus Alphavirus, BCRV) is an alphavirus within the western equine encephalitis virus complex whose primary vector is the swallow bug, Oeciacus vicarius Horvath (Hemiptera: Cimicidae), an ectoparasite of the colonially nesting cliff swallow, Petrochelidon pyrrhonota, that is also a frequent host for the virus.We investigated ecological correlates of BCRV infection in 100-bug pools at 14 different swallow colony sites in southwestern Nebraska from summer 2004, by using plaque assay on Vero cells to identify cytopathic virus and reverse transcription-polymerase chain reaction to identify noncytopathic viral RNA. We found 26.7% of swallow bug pools …

Arsenic Toxicity In Plhc-1 Cell Line And The Distribution Of Arsenic In Central Appalachia, Yeong Nam Jeong

Theses, Dissertations and Capstones

Our ecosystem has geobiophysical relationships. Environmental pollution can lead to immediate consequences like organism death or lack of reproduction. It can also lead to long-range consequences through mutations and DNA damage. Fish can be affected very directly by environmental contamination in water but the study of fish is not performed well. We are developing a quantitative assay to assess DNA damage in vitro due to heavy metal contamination using a tissue culture line of Poeciliopsis lucida, the desert pupfish, which is used for other toxicology assays. To detect DNA damage, Single Cell Gel Electrophoresis (Comet Assay) is very useful. …

An Hsus Report: Human Health Implications Of U.S. Live Bird Markets In The Spread Of Avian Influenza, The Humane Society Of The United States

Impact of Animal Agriculture

After millions of years of existing as a harmless infection of aquatic birds, some strains of avian flu have developed the ability to mutate into highly pathogenic forms that may not only be deadly for birds, but potentially more dangerous for humans as well. Experts from the World Health Organization, the World Organization for Animal Health, and the Food and Agriculture Organization of the United Nations have joined leading scientists in implicating industrialized poultry production for providing fertile ground for the transformation of benign bird flu into highly pathogenic strains.

Live bird markets can be the conduit by which waterfowl …

Their Bugs Are Worse Than Their Bite: Emerging Infectious Disease And The Human-Animal Interface, Michael Greger

State of the Animals 2007

In the twenty-five years since that announcement, what we now know as AIDS has killed 20 million people (National AIDS Trust 2005). Where did the AIDS virus— and other emerging diseases, such as severe acute respiratory syndrome (SARS), Ebola, mad cow— come from?

The Human/Animal Interface: Emergence And Resurgence Of Zoonotic Infectious Diseases, Michael Greger

Transgenesis Collection

Emerging infectious diseases, most of which are considered zoonotic in origin, continue to exact a significant toll on society. The origins of major human infectious diseases are reviewed and the factors underlying disease emergence explored. Anthropogenic changes, largely in land use and agriculture, are implicated in the apparent increased frequency of emergence and reemergence of zoonoses in recent decades. Special emphasis is placed on the pathogen with likely the greatest zoonotic potential, influenzavirus A.

Self-Medication And Homeostatic Behaviour In Herbivores: Learning About The Benefits Of Nature’S Pharmacy, Juan J. Villalba, Frederick D. Provenza

Behavioral Education for Human, Animal, Vegetation, and Ecosystem Management (BEHAVE)

Traditional production systems have viewed animals as homogeneous ‘machines’ whose nutritional and medicinal needs must be provided in a prescribed manner. This view arose from the lack of belief in the wisdom of the body to meet its physiological needs. Is it possible for herbivores to select diets that meet their needs for nutrients and to write their own prescriptions? Our research suggests it is. Herbivores adapt to the variability of the external environment and to their changing internal needs not only by generating homeostatic physiological responses, but also by operating in the external environment. Under this view, food selection …

Mark-Recapture Of Chinese Paddle-Tail Salamanders (Pachytriton Brevipes) Using Spot Pattern Recognition, Michelle Lester

Undergraduate Honors Theses

An abundance and demography survey was conducted on Chinese Paddle-tail salamanders, Pachytriton brevipes, found within the Valley of the Wild Monkeys Park in Huangshan, China. Established mark-recapture sampling techniques were used to investigate population size of this species within the park's streams. Digital photographs were taken of all individuals encountered in order to identify recaptures in a non-invasive manner. There were 56 adult individuals encountered with six recaptured in Y A2 stream and 12 individuals with five recaptured in the Y Al stream. Both Jolly-Seber closed population and Lincoln-Peterson open population models were used to estimate population abundance. Estimates …

Comparative Demography And Dietary Resource Partitioning Of Two Wild Ranging Asiatic Equid Populations, Ellen Schulz, Thomas Kaiser, Annegret Stubbe, Michael Stubbe, Ravčigijn Samjaa, Nyamsuren Batsaikhan, Joachim Wussow

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Tooth wear signatures allow inference on the dietary traits of herbivorous ungulates. Comparing dietary regimes of taxonomically closely related populations further allows inference on habitat structure and food availability. The mesowear method of tooth wear evaluation has opened up a pathway to reconstruct subtle differences in dietary behavior and resource partitioning based on skeletal material as the only source of information. Eighty cheek dentitions of Asian wild asses (Equus hemionus) from the Southern Gobi (Mongolia) and 61 dentitions of African free ranging donkeys (Equus asinus) from the Emirate Sharjah (United Arab Emirates) were investigated for their …

Protostrongylid Parasites And Pneumonia In Captive And Wild Thinhorn Sheep (Ovis Dalli), Emily J. Jenkins, A. M. Veitch, Susan J. Kutz, T. K. Bollinger, J. M. Chirino-Trejo, B. T. Elkin, K. H. West, Eric P. Hoberg, L. Polley

Harold W. Manter Laboratory of Parasitology: Faculty Publications

We describe health significance of protostrongylid parasites (Parelaphostrongylus odocoilei and Protostrongylus stilesi) and other respiratory pathogens in more than 50 naturally infected Dall’s sheep (Ovis dalli dalli) from the Mackenzie Mountains, Northwest Territories (1998–2002) as well as in three Stone’s sheep (O. d. stonei) experimentally infected with P. odocoilei (2000–2002). Histological lesions in the brain and distribution of P. odocoilei in the muscles of experimentally and naturally infected sheep were consistent with a previously hypothesized ‘‘central nervous system to muscle’’ pattern of migration for P. odocoilei. Dimensions of granulomas associated with eggs of …

Chlorophacinone Baiting For Belding’S Ground Squirrels, Craig A. Ramey, George H. Matschke, Richard M. Engeman

United States Department of Agriculture Wildlife Services: Staff Publications

The efficacy of using 0.01% chlorophacinone on steam-rolled oat (SRO) groats applied in CA alfalfa by spot-baiting/hand baiting around burrow entrances (~11.5 g) to control free-ranging Belding's ground squirrels (Spermophilus beldingi) were compared in 6 randomly assigned square treatment units (TUs). Four TUs were given the rodenticide and 2 treated with placebo bait. Each TU was a 0.4 ha square surrounded by a similarly treated 5.5 ha square buffer zone. Baits were applied on May 13 and re-applied, on May 20 and May 22, after 7 days of un-forecasted cool wet weather greatly reduced their above ground activity. Pesticide (EPA …

A Review Of Shiga Toxin Escherichia Coli And Salmonella Enterica In Cattle And Free-Ranging Birds: Potential Association And Epidemiological Links, Kerri Pedersen, Larry Clark

Human–Wildlife Interactions

Cattle are the main reservoir for human infection by pathogenic Escherichia coli and Salmonella enterica. To prevent entry of these foodborne pathogens into the human food chain, management factors at the farm level must be identified and controlled. External sources of contamination, such as birds, should be considered as potential sources of transmission over long distances. In this review, we focus on the epidemiology of infection by E. coli and S. enterica and the consequences of birds acting as disseminators of these pathogens at dairy farms in terms of cattle health and the subsequent effects on human health.

Distribution And Disease Prevalence Of Feral Hogs In Missouri, R. Edwin Hartin, Mark R. Ryan, Tyler A. Campbell

Human–Wildlife Interactions

No attempts have been made to document the distribution of feral hogs (Sus scrofa) in Missouri. Also, antibody prevalence for pseudorabies virus and swine brucellosis have not been reported from Missouri. Our objectives were to characterize the current distribution of feral hogs in Missouri and to determine prevalence and distribution of feral hogs with antibodies against selected important diseases. We collected feral hog sighting data both from the public and Missouri Wildlife Services and Missouri Department of Conservation wildlife biologists. We determined prevalence of antibodies against pseudorabies virus, swine brucellosis, tularemia, and classical swine fever. From 2000 to …

Integrated Coastal Spatial Allocation And Planning Of Aquaculture In A Geographical Information System Approach, Andrew Ehiabhi Akhighu

World Maritime University Dissertations

No abstract provided.

Detection Of Panulirus Argus Virus 1 (Pav1) In The Caribbean Spiny Lobster Using Fluorescence In Situ Hybridization (Fish), Caiwen Li, Jeffrey D. Shields, Hamish J. Small, Kimberly S. Reece, Carmony L. Hartwig, Roland A. Cooper, Robert E. Ratzlaff

Collected Faculty Scholarship

Panulirus argus Virus 1 (PaV1) is the first virus known to be pathogenic to a wild lobster. It infects the Caribbean spiny lobster P. argus from the Florida Keys, and has a predilection for juveniles. The monitoring of the virus in wild populations and study of its behavior in the laboratory require the development of reliable diagnostic tools. A sensitive and specific fluorescence in situ hybridization (FISH) assay was developed for detection of PaV1. The lower detection limit using a 110 bp DNA probe in a dot-blot hybridization for PaV1 DNA was 10 pg of cloned template PaV1 DNA and …

Wild Bird Banding And Testing For Avian Influenza In The Plain Of Reeds, Vietnam, Kyle Campbell

Independent Study Project (ISP) Collection

Highly pathogenic avian influenza (HPAI) virus H5N1 presents an incredible threat to human and animal health throughout the planet. Little is known about the prevalence of this virus in wild bird populations; however it is evident that the virus has spread throughout most of Asia, Eastern Europe and North Africa through well established migratory flyways. Although H5N1 was first detected in central China, Vietnam has been hit the hardest by this virus, with nearly one hundred human cases to date (World Health Organization, 2006) and one hundred twenty million dollars lost in their poultry industry (Gov. of USA, 2005). Even …

Detection Of Panulirus Argus Virus 1 (Pav1) In The Caribbean Spiny Lobster Using Fluorescence In Situ Hybridization (Fish), Caiwen Li, Jeffrey D. Shields, Hamish J. Small, Kimberly S. Reece, Carmony L. Hartwig, Roland A. Cooper, Robert E. Ratzlaff

Biological Sciences Faculty Publications

Panulirus argus Virus 1 (PaV1) is the first virus known to be pathogenic to a wild lobster. It infects the Caribbean spiny lobster P. argus from the Florida Keys, and has a predilection for juveniles. The monitoring of the virus in wild populations and study of its behavior in the laboratory require the development of reliable diagnostic tools. A sensitive and specific fluorescence in situ hybridization (FISH) assay was developed for detection of PaV1. The lower detection limit using a 110 bp DNA probe in a dot-blot hybridization for PaV1 DNA was 10 pg of cloned template PaV1 DNA and …

Fisheries Research Contract Report No. 15 - Aquatic Animal Health Subprogram: Pilchard Herpesvirus Infection In Wild Pilchards (Frdc Project No. 2002/044) Final Report, Brian Jones, Melanie Crockford, Richard Whittington, Mark Crane, Graham Wilcox

Fisheries Research Contract Reports

In 1995 and again in 1998/9, millions of pilchards (Sardinops sagax neopilchardus) were found dead or dying off the coast of Australia. Some pilchards in New Zealand were also affected during the 1995 epizootic. The epizootics moved progressively in a "bushfire-like" manner against the prevailing currents at a rapid speed. An uncharacterised herpesvirus, pilchard herpesvirus (PHV), was associated with both mortality events and, based on its occurrence in affected fish and the disease pathogenesis, generally accepted as the causative agent, although experimental evidence of its role was not established. Until recently, rapid and sensitive methods to detect PHV were not …

Strategies For Reducing Mosquito-Borne Disease Vulnerability In Equine Populations: A Kentucky Case Study, Sara Dalton

Masters Theses & Specialist Projects

This research examined equine management practices that limit or contribute to the spread of West Nile virus and other mosquito-bome disease. I hypothesize that there is a relationship between equine management practices and outbreaks of mosquito-borne disease in horse populations. Improved and appropriate mosquito habitat management may limit the risk of mosquito-borne disease in humans and horses by helping to lower the mosquito populations. The study goals were to recognize equine management practices and mosquito prevention practices that foster outbreaks of mosquito-borne disease. This study used a questionnaire for county level analysis of equine management practices and the relationship to …

Sheep Updates 2006 - Contents, Department Of Agriculture And Food, Western Australia

Sheep Updates

No abstract provided.

Sheep Updates 2006 - Part 1, David Sackett, Kevin Foster, Ronald J. Yates, Phil Nichols, Graeme Martin, John Milton, Scott Williams, Garry Mcalister, Mark Suttie, Peter Fennessy, Jack Cocks

Sheep Updates

This session covers seven papers from different authors:

PLENARY

1. Making Dollars from Merinos, David Sackett, Holmes Sackett & Associates Pty Limited, Wagga Wagga, NSW

2. A new variety of sulla (Hedysarun coronarium)for forage production in southern Australia, Kevin Foster, Ron Yates, Phil Nichols, Department of Agriculture and Food, WA and Centre for Legumes in Mediterranean Agriculture, UWA

3. Mating - Short and fast is better, Graeme Martin, John Milton, Faculty of Natural & Agricultural Sciences, The University of Western Australia

4. Breech strike protection in sheep post 2010, Scott Williams, Program Manager Animal Health and Welfare, Australian Wool …

Sheep Updates 2006 - Part 4, K. G. Geenty, A. A. Swan, A. J. Smith, J. L. Smith, Chris Oldham, R. G. Woodgate, R. A. Love, E. Dobbe, H. M. Hoult, J. Pearson, S. Hill, A. Van Burgel, R. B. Besier, R. Warburton, L. Mathwin, D. Rogers, E. Crossley, Allan Herbert, P. Nichols, Tony Albertsen, Darryl Mcclements, Graeme Martin, Penny Hawken, Caroline Vinoles, Beth Paganoni, Dominique Blanche

Sheep Updates

This session covers seven papers from different authors:

MANAGEMENT

1. Wool and meat traits in Merino flocks in different regions, K.G. Geenty, A.A. Swan, A.J. Smith, J.L. Smith, Sheep CRC and CSIRO Livestock Industries, Armidale

2. Fat score or Condition score? - It all depends on what you want to do! Chris Oldham, Department of Agriculture and Food Western Australia

3. Sheep worm control - the latest for Western Australia, RG Woodgate, RA Love, E Dobbe, HM Hoult, J Pearson, S Hill, A van Burgel and RB Besier, Department of Agriculture and Food Western Australia

PASTURES

4. Rethinking pasture production …

Bovine Respiratory Disease In Feedlot Cattle: Environmental, Genetic, And Economic Factors, G. D. Snowder, L. Dale Van Vleck, L. V. Cundiff, G. L. Bennett

Department of Animal Science: Faculty Publications

The objective of this study was to characterize genetic, environmental, and economic factors related to the incidence of bovine respiratory disease (BRD) in feedlot calves. Records from 18,112 calves representing 9 breeds (Angus, Braunvieh, Charolais, Gelbvieh, Hereford, Limousin, Pinzgauer, Red Poll, and Simmental) and 3 composite types (MARC I, MARC II, and MARC III) over a 15-yr period (1987 to 2001) were evaluated. Disease incidence was observed and recorded by station veterinary and technical staff. The incidence of BRD varied across years, with the annual observed incidence ranging from 5 to 44%. From 1987 to 1992, the annual average incidence …