Digital Commons Network^™

Verification Of Echosounder Measurements Of Thickness And Spatial Distribution Of Kelp Forests, Huamei Shao, Kenji Minami, Hokuto Shirakawa, Takashi Maeda, Toshiaki Ohmura, Yoshikazu Fujikawa, Norishige Yotsukura, Masahiro Nakaoka, Kazushi Miyashita

Journal of Marine Science and Technology–Taiwan

Acoustic methods can be used to assess seaweed meadows. The accuracy of the methods is a key factor in the estimation of seaweed distribution and conditions. We obtained and verified thickness and spatial distribution values measured using an echosounder. We determined the thickness of seaweed growing in the coastal waters off Higashidoori-mura, Aomori, Japan on June 5-6, 2013. Acoustic data were collected using an on-board quantitative echosounder at 120 kHz. The thickness was also directly measured at 14 points. The root mean square error (RMSE) of the thickness determined by the acoustic and direct methods was calculated. A survey to …

Mitigating The Conflict Between Pitfall-Trap Sampling And Conservation Of Terrestrial Subterranean Communities In Caves, Peter Kozel, Tanja Pipan, Nina Šajna, Slavko Polak, Tone Novak

International Journal of Speleology

Subterranean habitats are known for their rich endemic fauna and high vulnerability to disturbance. Many methods and techniques are used to sample the biodiversity of terrestrial invertebrate fauna in caves, among which pitfall trapping remains one of the most frequently used and effective ones. However, this method has turned out to be harmful to subterranean communities if applied inappropriately. Traditionally, pitfall traps have been placed in caves solely on the ground. Here we present an optimized technique of pitfall trapping to achieve a balance between sampling completeness and minimal disturbance of the fauna in the cave. Monthly we placed traps …

Phenology, Habitat Use, And The Impacts Of Wetland Management On Autumn Migrating Rails In Missouri, Auriel M.V. Fournier

Graduate Theses and Dissertations

Rails (Family: Rallidae) are among the least studied birds in North America, in large part due to their elusive nature. As a wetland-dependent species, understanding the timing of their migration and their habitat needs during migration is especially important since management needs to be timed to balance the needs of many species. I developed and verified a new distance sampling based nocturnal ATV spotlight survey because traditional call-broadcast surveys are not effective during autumn migration because of the drop off in call rate after the breeding season. These surveys allow us to ask point-level questions about what habitats rails select …

Heterogeneity Of Avian Breeding Habitat On Grazing Lands Of The Northern Great Plains, Maggi S. Sliwinski

School of Natural Resources: Dissertations, Theses, and Student Research

Native rangelands in the Great Plains are largely privately owned and used for beef production. Vegetation heterogeneity is important for maintaining biodiversity, but private land may be more homogenous than desired. My research had two components: 1) to examine whether a variety of grazing strategies created vegetation heterogeneity in a large, intact rangeland, and 2) to understand beef producers’ attitudes about vegetation heterogeneity.

First, I sampled vegetation structure, composition, and bird abundance at multiple plots on eleven management units in Cherry County, Nebraska. Units were managed with commonly used grazing strategies (e.g., short-duration grazing and season-long continuous grazing). I examined …

Herpetoplogical Survey Across Three Distinct Habitats In Ankarana National Park: Long-Term Effects Of Past Land Use On Species Composition In And Around The Park, Julia Park

Independent Study Project (ISP) Collection

Ankarana National Park is home to a diverse population of herpetofauna. In this study, three distinct habitats in and around Ankarana National Park were surveyed for herpetological diversity. These habitats were defined as the deciduous forest located within the “tsingy” limestone karst canyons, the dry deciduous forest outside of the canyons, within the borders of the park, and the anthropogenically affected forest outside of the park’s borders, which is subject to logging and fruit tree harvesting. A total of 27 species of herpetofauna – six amphibian and 21 reptile species were found over the course of twelve days of surveying …

Gait Changes In A Line Of Mice Artificially Selected For Longer Limbs, Leah M. Sparrow, Emily Pellattt, Sabrina S. Yu, David A. Raichlen, Herman Pontzer, Campbell Rolian

Publications and Research

In legged terrestrial locomotion, the duration of stance phase, i.e., when limbs are in contact with the substrate, is positively correlated with limb length, and negatively correlated with the metabolic cost of transport. These relationships are well documented at the interspecific level, across a broad range of body sizes and travel speeds. However, such relationships are harder to evaluate within species (i.e., where natural selection operates), largely for practical reasons, including low population variance in limb length, and the presence of confounding factors such as body mass, or training. Here, we compared spatiotemporal kinematics of gait in Longshanks, a long-legged …

Cross-Modal Recognition Of Familiar Conspecifics In Goats, Benjamin J. Pitcher, Elodie F. Briefer, Luigi Baciadonna, Alan G. Mcelligott

Recognition Collection

When identifying other individuals, animals may match current cues with stored information about that individual from the same sensory modality. Animals may also be able to combine current information with previously acquired information from other sensory modalities, indicating that they possess complex cognitive templates of individuals that are independent of modality. We investigated whether goats (Capra hircus) possess cross-modal representations (auditory–visual) of conspecifics. We presented subjects with recorded conspecific calls broadcast equidistant between two individuals, one of which was the caller. We found that, when presented with a stablemate and another herd member, goats looked towards the caller sooner and …

Pteropus Voeltzkowi And The Understory: A Study Of The Behavioral Impacts Of The Pemba Flying Fox On The Vegetation And Soil Quality Of Pemba Island, Lea Davidson

Independent Study Project (ISP) Collection

This study examines the impact of Pteropus voeltzkowi , colloquially known as the Pemba Flying Fox, on biodiversity and health of the forest ground layer. Known to serve as reforesters, high concentrations of both fruit seeds and nutrient dense guano are introduced into specific environmental locations due to the bat's behavioral patterns. Working around two roost locations, one in Ngezi Forest and the other at the Kidike conservation site near Mjini Ole, diversity of juvenile vegetation was measured and quantified. In a laboratory setting, soil samples from both sites were analyzed for impacts of guano concentration on soil chemical properties. …

The Feasibility Of Counting Songbirds Using Unmanned Aerial Vehicles, Andrew M. Wilson, Janine M. Barr, Megan E. Zagorski

Environmental Studies Faculty Publications

Obtaining unbiased survey data for vocal bird species is inherently challenging due to observer biases, habitat coverage biases, and logistical constraints. We propose that combining bioacoustic monitoring with unmanned aerial vehicle (UAV) technology could reduce some of these biases and allow bird surveys to be conducted in less accessible areas. We tested the feasibility of the UAV approach to songbird surveys using a low-cost quadcopter with a simple, lightweight recorder suspended 8 m below the vehicle. In a field experiment using playback of bird recordings, we found that small variations in UAV altitude (it hovered at 28, 48, and 68 …

Identification Of Candidate Cellulose Utilizing Bacteria From The Rumen Of Beef Cattle, Using Bacterial Community Profiling And Metagenomics, Lee Opdahl

Electronic Theses and Dissertations

The ruminal microbiome allows ruminant animals to convert cellulosic biomass into food products. A majority of ruminal microorganisms remain uncharacterized due, in part, to the complexity of ruminal microbial communities. In order to gain further insight, selection-based batch culturing from bovine rumen fluid, in combination with metagenomics, was used to identify and characterize previously uncharacterized rumen bacteria capable of metabolizing cellulose, which was supplemented as a purified substrate. 16S rRNA-based population analysis was used to identify rumen bacteria enriched within 14 days of culturing. As a result of 4 independent experiments, seven different candidate cellulose-utilizing species-level operational taxonomic units (OTUs) …

Measuring Aquatic Organism Responses To Grassland Restoration: Does The Field Of Dreams Really Exist?, David A. Schumann

Electronic Theses and Dissertations

Landscape homogenization and the degradation of riparian areas has greatly impaired stream ecosystems throughout North America. Conservation programs may repair riparian ecosystems to indirectly improve water quality and instream habitat heterogeneity in hopes to elicit biological responses. However, focused manipulations on isolated stream fragments have rarely achieved biological goals. Prairie streams with restored riparian areas were appraised (chemical, physical, and biological variables) to quantify the indirect effects of prevalent grassland conservation practices on aquatic resources. Riparian rehabilitation, via passive methods, promoted bank-stabilizing vegetation along all conservation stream reaches. Riparian vegetation and function quickly recovered from previous agricultural disturbances at conservation …

Species Diversity And Community Structure Of Zooplankton In Threedifferent Types Of Water Body Within The Sakarya River Basin, Turkey, Pinar Gürbüzer, Özge Buyurgan, Çağri Tekatli, Ahmet Altindağ

Turkish Journal of Zoology

The aim of this study was to identify differences between different types of water body within the same river basin by comparing the composition of the zooplankton community. The study was conducted in three types of water body in the Sakarya Basin in northwestern Turkey: an alluvial barrier lake (Lake Poyrazlar), a pond (Sorgun Pond), and a reservoir (Çubuk II Reservoir). The spatiotemporal changes of these three types of aquatic habitats were investigated in terms of the zooplankton organisms by examining their diversity, evenness, and differences in the abundance of species. A total of 81 species were identified. Thirty-eight species …

Food Patch Particularity And Forging Strategy Of Reintroduced Przewalski's Horse In North Xinjiang, China, Zang Sen, Cao Qing, Alimujiang Keremu, Liu Shanhui, Zhang Yongjun, Hu Defu

Turkish Journal of Zoology

In 2001, Przewalski's horse (Equus przewalskii) was reintroduced into a Eurasian desert-steppe transitional area in China. Recent studies of Przewalski's horse have not examined the relationship between food patches and the horse's feeding choice behavior. This study aimed to study the vegetation communities of the reintroduction area and combine this information with feeding time data to explore the foraging strategy of Przewalski's horse. A total of 588 vegetation patches were surveyed, which were divided into 27 vegetation clusters. All vegetation clusters could be divided into feeding clusters, which constituted 59.23% of the study area, and nonforaging clusters, which constituted 11.14%. …

Balancing Stability And Flexibility In Adaptive Governance: An Analysis Of Tools Available In U.S. Environmental Law, Robin Kundis Craig, Ahjond S. Garmestani, Craig R. Allen, Craig Anthony (Tony) Arnold, Hannah E. Birge, Daniel A. Decaro, Alexander K. Fremier, Hannah Gosnell, Edella Schlager

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Adaptive governance must work “on the ground,” that is, it must operate through structures and procedures that the people it governs perceive to be legitimate and fair, as well as incorporating processes and substantive goals that are effective in allowing social-ecological systems (SESs) to adapt to climate change and other impacts. To address the continuing and accelerating alterations that climate change is bringing to SESs, adaptive governance generally will require more flexibility than prior governance institutions have often allowed. However, to function as good governance, adaptive governance must pay real attention to the problem of how to balance this increased …

A Bayesian Method For Assessing Multi-Scale Species-Habitat Relationships, Erica F. Stuber, Lutz F. Gruber, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Context Scientists face several theoretical and methodological challenges in appropriately describing fundamental wildlife-habitat relationships in models. The spatial scales of habitat relationships are often unknown, and are expected to follow a multi-scale hierarchy. Typical frequentist or information theoretic approaches often suffer under collinearity in multiscale studies, fail to converge when models are complex or represent an intractable computational burden when candidate model sets are large.

Objectives Our objective was to implement an automated, Bayesian method for inference on the spatial scales of habitat variables that best predict animal abundance.

Methods We introduce Bayesian latent indicator scale selection (BLISS), a Bayesian …

Are Weevils Picky Eaters? Community Structure And Host Specificity Of Neotropical Saproxylic Beetles (Coleoptera: Curculionidae), Jhunior A. Morillo

Dissertations and Theses

Abstract Primary saproxylic beetles play a major role in forest nutrient cycling and making deadwood accessible to other decomposers. Understanding beetle host preferences and patterns of community assembly is critical for their conservation, and for predicting which species might become invasive. This project aims to investigate the ecological and host specificity, as well as the community composition of curculionids in a mosaic of old-growth (OG) and secondary forest on the Osa Peninsula, Costa Rica. The subfamily Scolytinae was expected to be the most species-rich and abundant. Ambrosia beetles were expected to have more generalist species than other curculionids. Old growth …

The Bee Fauna Of The Horse Mountain And Grouse Mountain Region, Humboldt County, California, Carrie Lopez

Cal Poly Humboldt theses and projects

Recent concerns about the ecological well-being of bee communities in California and elsewhere have increased the need for monitoring programs and studies that evaluate the impact of habitat loss and alteration on bee diversity and abundance. Such studies depend critically on the expertise of people trained in taxonomy, but their numbers have declined in recent years. My primary goal was to gain a comprehensive first-hand experience with bee identification by documenting the fauna of a previously unstudied area in the mountains of northwestern California and by writing an identification key, intended for dedicated non-specialists, to the area’s 35 species of …

Spatial And Temporal Variations Of Soft Bottom Polychaetes Of Sinop Peninsula(Southern Black Sea) With New Records, Güley Kurt Şahi̇n, Ertan Dağli, Murat Sezgi̇n

Turkish Journal of Zoology

The soft bottom polychaete community was examined seasonally at eight stations between August 2009 and July 2010. A total of 76 species belonging to 27 families were identified in the Sinop Peninsula (southern Black Sea), of which 23 species are new records for the Black Sea fauna and 7 species for the Black Sea coast of Turkey. Syllidae was the best represented family in the research area and contributed 15.78% of the total fauna. The most dominant and frequent species were Micronephthys stammeri and Protodorvillea kefersteini in the study area. Community parameters varied significantly among stations and seasons; number of …

A Catalogue Of The Eudrilidae And Megascolecidae (Clitellata: Lumbricina)From South America, With Two New Records Of Exotic Species From Brazil, José Eriberto De Assis, José Roberto Botelho Souza, Maria Laís Martins Vieira, João Vitor Nunes De Souza, Gilberto Golçalves Rodrigues, Martin Lindsey Christoffersen

Turkish Journal of Zoology

A catalogue of the terrestrial Eudrilidae and Megascolecidae is provided, with 10 genera and 18 species reported to date from South America. In addition, we provide the valid names, their synonyms, and the original citation. Eudrilidae and Megascolecidae contain members that have a global distribution, probably as a result of human dispersion. The species of eudrilid Eudrilus eugeniae is very common in other regions with a tropical climate, while the megascolecid species Amynthas gracilis is by far the most common earthworm in large cities such as São Paulo and Rio de Janeiro in Brazil. Two samples taken in Brazil revealed …

Beyond Zar: The Use And Abuse Of Classification Statistics For Otolith Chemistry, C. M. Jones, M. Palmers, J. J. Schaffler

OES Faculty Publications

Classification method performance was evaluated using otolith chemistry of juvenile Atlantic menhaden Brevoortia tyrannus when assumptions of data normality were met and were violated. Four methods were tested [linear discriminant function analysis (LDFA), quadratic discriminant function analysis (QDFA), random forest (RF) and artificial neural networks (ANN)] using computer simulation to determine their performance when variable-group means ranged from small to large and their performance under conditions of typical skewness to double the amount of skewness typically observed. Using the kappa index, the parametric methods performed best after applying appropriate data transformation, gaining 2% better performance with LDFA performing slightly better …

Integrating Habitat Suitability Modeling And Radio Telemetry To Describe Habitat Use Of The Western Massasaugas, Sistrurus T. Tergeminus, In Texas, Mitchell R. Barazowski

Biology Theses

Habitat suitability modeling using the software package MaxEnt (Phillips, Anderson, & Schapire, 2006) is a popular method for describing the habitat of rare species. MaxEnt uses “presence only” data to develop models; however presence data are highly skewed towards areas of high detection probability and these areas may not represent the full range of habitat use. Thusly, predictions from models developed using only data from areas with high detection probability may not represent all suitable habitat. This study tested the ability of MaxEnt models developed using three different data sets to accurately describe Western Massasauga (Sistrurus t. tergeminus) habitat at …

Wolf Predation: Where And How Wolves Kill Beavers, And Confronting The Biases In Scat-Based Diet Studies, Thomas Gable

All NMU Master's Theses

Beavers can be a significant prey item for wolves in boreal systems but how wolves hunt beavers is largely unknown. I inferred how wolves hunt beavers by identifying 22 kill sites using clusters of locations from GPS-collared wolves in Voyageurs National Park, Minnesota. Where wolves killed beavers varied seasonally with the majority (58%) of kills in the spring occurring below dams and on shorelines while the majority (80%) of kills in the fall were near feeding trails and canals. I deduced that the typical hunting strategy has 3 components: 1) waiting near areas of high beaver use until a beaver …

Sandhill Crane Roost Selection, Human Disturbance, And Forage Resources, Aaron T. Pearse, Gary L. Krapu, David A. Brandt

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Sites used for roosting represent a key habitat requirement for many species of birds because availability and quality of roost sites can influence individual fitness. Birds select roost sites based on numerous factors, requirements, and motivations, and selection of roosts can be dynamic in time and space because of various ecological and environmental influences. For sandhill cranes (Antigone canadensis) at their main spring staging area along the Platte River in south-central Nebraska, USA, past investigations of roosting cranes focuse donphysical channel characteristics related to perceived security as motivating roost distribution.We used 6,310 roost sites selected by 313 sandhill cranes over …

Intensive, Regular Sampling And Removal Of Modest Numbers Of Fishes Shows No Measurable Impact On Fish Populations In Three Streams Of North Georgia, Steven L. Powers

Southeastern Fishes Council Proceedings

Recent publications and restrictions on collecting by state fish and game managers indicate a growing concern regarding the impact of field sampling on native fish populations. To evaluate the validity of these concerns, data from five life-history studies conducted in Cherokee County, Georgia were examined to test the hypothesis that regular sampling has a negative impact on fish populations. Number of individuals collected was divided by time collecting to calculate catch per unit effort (CPUE) as an indicator of relative abundance for each species. The collecting sequence (i.e. the number of times a species had previously been sampled) was regressed …

Viral Zoonoses That Fly With Bats: A Review, Alfonso Calderon, Camilo Guzman, Jorge Salazar-Bravo, Luiz Tadeu Figueiredo, Salim Mattar, German Arrieta

MANTER: Journal of Parasite Biodiversity

Emerging infectious diseases are a growing threat to human health and a great challenge for global medical attention systems. Governmental agencies in tropical regions with abundant zoonotic pathogens should implement an active vigilance/monitoring model in bat reservoir populations because of their species richness, abundance and dispersal capabilities. Chiropterans represent approximately 20% of all mammal species, the second largest order in terms of number of species after rodents. Importantly, bats constitute natural reservoirs for potential infection of humans of several infectious disease agents such as Coronavirus, Filovirus, Lyssavirus, Paramyxovirus, and Flavivirus. Local disease outbreaks caused by new pathogens can …

Population Characteristics Of Human-Commensal Rodents Present In Households From Mérida, Yucatán, México, Jesús Alonso Panti-May, Silvia F. Hernández-Betancourt, Marco A. Torres-Castro, Carlos Machaín-Williams, Nohemi Cigarroa-Toledo, Lorenzo Sodá, Gabriela López-Manzanero, Josué R. Meza-Sulú, Victor M. Vidal-Martínez

MANTER: Journal of Parasite Biodiversity

Anthropocommensal rodents live in close proximity to humans in many habitats around the world. They are a threat to public health because of the pathogens they carry. Recent studies in Mérida, Yucatán, México, have shown that commensal rodents harbor potential zoonotic pathogens such as bacteria, helminths, and viruses. In this study, we describe reproductive and demographic parameters of house mice and black rats present in households from Mérida, Yucatán, México, a municipality located in a tropical region in southern México. Rodents were trapped in 142 households within the municipality of Mérida from 2011 to 2014. A total of 832 rodents …

Current Knowledge Of Studies Of Pathogens In Colombian Mammals, Viviana Gonzalez-Astudillo, Héctor E. Ramírez-Chaves, Joerg Henning, Thomas R. Gillespie

MANTER: Journal of Parasite Biodiversity

Mammals provide an important ecological habitat or niche space to microbial diversity, protistans (or protozoans) and metazoan parasites that can have profound effects on both human and animal health. Thus, understanding the status of mammalian species as hosts for pathogens holds relevance, especially during this time of anthropogenic environmental change. Despite the great diversity in the mammal fauna of Colombia, data in the literature on the occurrence of parasites and pathogens in these mammals are scarce and widely scattered. In order to understand the state of the knowledge of pathogens carried by wild mammals in Colombia, a systematic review of …

Assessment Of American White Pelican Predation And Reproductive Success Of Walleye In The Tamarac River, Mn, Jake Graham

Biology Graduate Theses

The Tamarac River is a major tributary of the Red Lakes MN, which provides an economically important multispecies fishery. The river experiences spring spawning migrations of northern pike, walleye, and white suckers. However, limited data exists related to reproductive success of fishes in the river. Furthermore, in the previous decade large congregations of American white pelicans (AWPE) have been observed using the Tamarac River as a foraging ground each spring. Assessing reproductive success of fishes in the Tamarac River provides a more holistic understanding of fish ecology in the river and the importance of the Tamarac River to the Red …

Translating Ecology, Physiology, Biochemistry And Population Genetics Research To Meet The Challenge Of Tick And Tick-Borne Diseases In North America, Maria Dolores Esteve-Gassent, Ivan Castro-Arellano, Teresa Patricia Feria-Arroyo, Ramiro Patino, Andrew Y. Li, Raul F. Medina, Adalberto A. Pérez De León, Roger Iván Rodríguez-Vivas

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Emerging and re-emerging tick-borne diseases threaten public health and the wellbeing of domestic animals and wildlife globally. The adoption of an evolutionary ecology framework aimed to diminish the impact of tick-borne diseases needs to be part of strategies to protect human and animal populations. We present a review of current knowledge on the adaptation of ticks to their environment, and the impact that global change could have on their geographic distribution in North America. Environmental pressures will affect tick population genetics by selecting genotypes able to withstand new and changing environments and by altering the connectivity and isolation of several …

Ecological Studies Of Wolves On Isle Royale, 2015-2016, Rolf O. Peterson, John A. Vucetich

Ecological Studies of Wolves on Isle Royale

Annual Report 2015-2016