Digital Commons Network^™

Examining Factors Of Variance In Energy Metabolism Of Dairy Cattle, Addison Lee Carroll

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Variation is thought to occur in the use of dietary energy for production in dairy cattle. First, variance can be observed when new methane mitigation strategies are fed resulting in increased H₂ output potentially resulting in downstream effects on estimates heat production via the Brouwer (1965) equation. Therefore, in chapter 3 a review was created to systematically describe the mathematics and theory behind the Brouwer equation, and rederive a heat production equation to integrate H₂ production. Results indicate heat production using the classical Brouwer equation (1965) relative to the rederived equation resulted in an overestimation of heat production …

Microbiome Variation In Production Phenotypes And The Role Of Colonization History In Microbiome Establishment, Seidu Adams

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Ruminant-based agriculture is expected to continue to be a major contributor to food security to feed the growing population. At the heart of nutrient degradation of complex organic matter within the rumen are its microbes. These microbes can convert otherwise unusable organic matter into usable protein and energy and can provide up to 50% of the animal’s protein needs and up to 70% of the energy needs. The microbial functional capacity within the rumen determines the nutrients utilized and the end products of fermentation. However, our understanding of microbial functional capacity within the rumen and factors that influence the rumen …

Understanding The Influence Of Traffic And Noise On The Wildlife Community Surrounding Fm106 And Sh100 In South Texas, Anna Rose Mehner

Theses and Dissertations

In South Texas, highways create landscape fragmentation, habitat degradation, and result in wildlife vehicle collisions. Vehicle collisions are the highest known cause of mortality of the endangered ocelot (Leopardus pardalis), which led Texas Department of Transportation to install nine wildlife crossing structures (WCS) on Farm-to-Market 106 and five on State Highway 100. These highways are along Laguna Atascosa National Wildlife Refuge, which is the location of the southernmost breeding population of ocelots in the United States. Many other wildlife species including bobcat (Lynx rufus) and coyote (Canis latrans), are present along these highways and …

Structure Modifications And Alternative Monitoring Designs Of Wildlife Road Mitigation Structures, Madison T. Nadler

Theses and Dissertations

Wildlife mitigation structures are designed to keep animals off roadways while providing them safe passage to the other side and not impeding traffic flow. Camera traps are commonly used to assess the success of these mitigation structures, but there are downfalls to both the methods and structures. Alternative mitigation structure designs are needed to better prevent wildlife from accessing roadways in areas where they should be deterred. Additionally, traditional camera trapping methods do not accurately capture the full wildlife communities that may be utilizing these structures and other survey methods are needed, specifically aimed at small mammals, amphibians, and reptiles. …

Guiding Wildlife: Evaluating Wildlife Exit Designs And Sensor Lights For Safer Highways In South Texas, Rupesh Maharjan

Theses and Dissertations

Roadside exclusionary fencing is more prevalent on highways to prevent wildlife-vehicle collisions. Although it can mitigate wildlife road mortality by limiting their access to the road, it can also create a barrier for wildlife stranded within the right-of-way. In State Highway 100 of Texas, the Texas Department of Transportation installed ten wildlife exits to allow wildlife to escape the fenced roadway, and a pair of sensor lights on 13 wildlife guards (WGs) to scare off target species (bobcats and coyotes) from crossing the guards and accessing the roadway. In this study, the effectiveness of three wildlife exit (WE) designs were …

The Impact Of In Ovo Administration Of Probiotic Lactobacilli On The Gut Health And Immune Competence Of Broiler Chickens, Shreeya Sharma

All Theses

Due to the incomplete development of their immune system, newly hatched chicks are vulnerable to a wide range of pathogenic microorganisms, including enteric bacterial pathogens during the early stage of life. To boost their immune system during this critical period, numerous studies suggest early feeding, either in ovo or immediately post-hatch, of nutrients and immunomodulators such as prebiotics, probiotics, phytobiotics, Toll-like receptors (TLRs) ligands, vitamins and minerals. Probiotics, defined as live, non-pathogenic microorganisms that confer beneficial effects on the host, have been extensively studied for their effects on poultry health. Supplementation of probiotics to chickens has demonstrated a broad spectrum …

Investigating Nekton Response To Changing Salinities In The Mississippi Sound: An Experimental And Statistical Approach, Adam Murray

Master's Theses

The Mississippi Sound provides nursery habitats for many coastal species and is recognized for its commercial fisheries. Previous freshening events linked to the Bonnet Carré Spillway, a Mississippi River flood diversion structure, proved catastrophic for oyster populations in the Mississippi Sound, but effects on mobile fish and shellfish species are not well-defined. The planned Mid-Breton Sediment Diversion (MBSD), an initiative to combat wetland loss, is also forecasted to lower salinities in the region, increasing the need to better understand responses of commercially and ecologically important species to freshening events. The objective of this study was to characterize effects of salinity …

The Relationship Between Chute Behavior And Morbidity In Cattle, Andrea Rankin

Animal Science Undergraduate Honors Theses

Most cattle see a handling chute at least once in their lives. Handling plays a huge role in cattle management, whether it’s for transportation, auction sales, deworming, medical treatments, or AI purposes. Morbidity related to Bovine Respiratory Disease (BRD) is one of the biggest causes of economic loss for ranchers and can be related to handling stress. Auction-derived calves (ADC; n=92) were brought to the University of Arkansas Savoy Research Facility for processing and monitoring for behavioral cues and disease. The objective of this study was to find a relationship between the calves’ behavior in the chute and morbidity. The …

Using High-Pressure Processing To Improve The Quality Of Dark-Cutting Beef, Ashley A. Hahn

Department of Animal Science: Dissertations, Theses, and Student Research

Previous studies have shown high-pressure processing (HPP) can be utilized to improve lean color of dark-cutting beef color by increasing the lightness and redness of steaks. However, the optimal parameters of length of time product is held under pressure and at which pressure must be applied have yet to be fully defined. Furthermore, the impact of HPP on color labile muscles in dark-cutting beef are currently unknown. Therefore, two studies were designed and specific efforts were focused on first defining optimal parameters for color stable muscles, followed by determining the effect of HPP on dark-cutting color labile muscles.

In the …

Relationship Between Host Genomics And Microbiomics In Beef Cattle, Andrew D. Lakamp

Department of Animal Science: Dissertations, Theses, and Student Research

As sequencing technology becomes more affordable and throughput increases, microbiome information is becoming more readily available. For beef cattle selection, microbial information has a variety of uses including being a target for genetic prediction or used as a means to explicitly describe additional phenotypic variability in other traits.

Infectious bovine keratoconjunctivitis (IBK), commonly known as pinkeye, is a disease that infects the ocular surface and surrounding tissue which is an animal health and producer economic concern. Vaccinations have shown to have variable effectiveness, while limited genetics studies have suggested that direct genetic selection for resistance would be slow. Therefore, an …

Examining Factors Of Variance In Energy Metabolism Of Dairy Cattle, Addison L. Carroll

Department of Animal Science: Dissertations, Theses, and Student Research

Variation is thought to occur in the use of dietary energy for production in dairy cattle. First, variance can be observed when new methane mitigation strategies are fed resulting in increased H₂ output potentially resulting in downstream effects on estimates of heat production via the Brouwer (1965) equation. Therefore, in chapter 3 a review was created to systematically describe the mathematics and theory behind the Brouwer equation, and rederive a heat production equation to integrate H₂ production. Results indicate heat production using the classical Brouwer equation (1965) relative to the rederived equation resulted in an overestimation of heat …

Impacts Of Annual Forage Management On Grazing Cattle Performance And Carrying Capacity, Shelby Davies Jenkins

Department of Animal Science: Dissertations, Theses, and Student Research

Rapid conversion of historical grasslands to cropland in recent history has led to limited perennial pasture availability and an increase in cost of pasture rent. Annual forages are an alternative grazing source. Many annual forages can grow and accumulate stockpile following summer harvest of wheat. Strip grazing is often suggested to increase grazing efficiency of stockpiled forages. To evaluate this, a stockpiled mixture of annual forages were either strip grazed or grazed continuously in the fall and winter. The mixture contained oats and rapeseed in the first year and a diverse warm season annual mixture in the second. Strip grazing …

Neural Network Architecture Search Enabled Wide-Deep Learning (Nas-Wd) Integrated Hyperspectral Imaging Understanding For Woody Breast In Poultry Processing, Chaitanya Kumar Reddy Pallerla

Graduate Theses and Dissertations

The development and implementation of a Wide & Deep (WD) learning model tailored for classification and regression tasks utilizing spectral data provides a robust solution to evaluate woody breast (WB) conditions in poultry fillets. This process begins with thorough data preprocessing, which includes loading spectral and classification datasets, imputing missing values with medians, and splitting the data into training and testing sets to ensure rigorous model evaluation. The WD model architecture integrates wide linear models and deep neural networks to harness the strengths of both approaches. The wide component excels at memorizing sparse feature interactions, while the deep component captures …

Economic Evaluation Of Grazing Steers On Summer Annuals Sod-Seeded Into Warm-Season Perennial Pasture, Ivanelle Meyer, Michael P. Popp, Christine C. Nieman, James L. Mitchell, Kenneth P. Coffey

Agricultural Economics and Agribusiness Faculty Publications and Presentations

Objectives

Materials and Methods

Results and Discussion …

Finding Them Before They Find Us: Solving The Emerging Infectious Disease Crisis, Daniel R. Brooks

MANTER: Journal of Parasite Biodiversity

The human population grows daily, it’s on the move, and it’s carving a deep technological footprint on our planet. We alter landscapes and perturb ecosystems, inserting ourselves and other species into novel regions of the world, leading to potentially irreversible changes in the biosphere. This is not news. More than 75 years ago, Charles Elton, one of the founders of modern ecology, wrote, “We must make no mistake; we are seeing one of the greatest historical convulsions in the world’s fauna and flora.” We are also in the midst of a public health and epidemiological crisis. Climate change alters movements …

Accounting For Post-Release Mortality In Data-Limited, Length-Based Assessments For Four Demersal Fish Species With Varying Life Histories, Brett Crisafulli, Sybrand A. Hesp, Ebenezer Afrifa-Yamoah, Ute A. Mueller, Karina L. Ryan, David V. Fairclough, Norman G. Hall, Johnny Lo

Fisheries Research Articles

Released (or discarded) fish from recreational and commercial line fisheries can experience significant levels of post-release mortality (PRM), affecting sustainability. Although PRM effects are often considered in data-rich (integrated model) assessments, this is uncommon in data-limited assessments. This study investigates impacts of PRM when applying data-limited, length-based assessment methods for four reef-dwelling demersal fish species in temperate Western Australia (Glaucosoma hebraicum, Chrysophrys auratus, Choerodon rubescens and Epinephelides armatus). These species differ considerably in their biology and susceptibility to PRM. For each species simulations were undertaken to (1) evaluate the reliability of a length-based catch curve (LBCC) …

Red Snapper (Lutjanus Campechanus) Neurocranium, Michelle Bassali, Anthony D'Auria, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Variation In Diet And Leafy Browse Offerings Amongcolobus Monkeys (Colobus Spp.) And Langurs(Trachypithecus Spp.) In Aza Facilities, Maura R. Plocek, Noah T. Dunham

Student Scholarship

Providing nutritionally balanced diets is a key aspect of successful husbandry and can help support sustainable ex situ populations. This study focuses on the diets of zoo‐housed colobus monkeys (Colobus angolensis and C. guereza) and langurs (Trachypithecus cristatus and T. francoisi) across AZA institutions. We utilized survey responses from 34 institutions to (1)document the extent of dietary variation with regard to food categories and macronutrients offered, (2) assess interspecific variation in diets offered, and (3) identify important aspects of browse provisioning among institutions. A total of 95 different food items and 229 common‐name browse types were …

Why Is Fish Welfare Still So Neglected?, Caroline M. Maia

Animal Sentience

Oldfield & Bonano (O&B) address an important problem in the field of fish welfare, one that calls for greater attention from scientists and practitioners. O&B show that fish welfare, particularly at the psychological level, is under-investigated. They focus mainly on zoos and aquaria, but their concerns extend also to other domains, including fish farming. Fish are sentient animals; priority should be given to their welfare in all environments where they are under human care.

Largemouth Bass Neurocranium, Owen Duerbeck, Ian Thelwell, Oliva Weeks

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Black Grouper Neurocranium, Angelina Trapani-Banyra, Victoria Bruno, Mason Schleicher

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Food Safety, Livestock Health, And Productivity Of A Layer Farm Following Implementation Of A Certified Haccp System In Japan, Hiroshi Akaike, Makoto Nagai, Tomomitsu Alexandre Okatani, Sumalee Boonmar, Yukio Morita

The Thai Journal of Veterinary Medicine

This study examined the safety and productivity of a layer farm over a 3-year period following the implementation of a farm Hazard Analysis and Critical Control Points (HACCP) system in 2019. The critical control point was “automatic egg collection” and no deviations from critical limits were observed, indicating the eggs were safe. In addition, the egg production rate increased and the feed conversion rate decreased. In contrast, the viability after the introduction of a farm HACCP system, in which the replenishment of new hens was discontinued after forced molting, showed an increasing trend. These results suggest that the HACCP system …

Tissue Proteomics Of Feline Mammary Carcinoma: Identification Of Potential Biomarkers Based On Metastatic Status And Histopathological Characteristics, Weejarin Paphussaro, Sittiruk Roytrakul, Narumon Phaonakrop, Sawanya Charoenlappanit, Anudep Rungsipipat, Theerawat Tharasanit, Gunnaporn Suriyaphol Assoc. Prof.

The Thai Journal of Veterinary Medicine

Feline mammary carcinoma (FMC) is a prevalent and aggressive cancer with high metastatic potential. Few tissue biomarkers have been reported to help evaluate disease progression in FMC. This study aimed to analyze the tissue proteomic profiles of metastatic feline mammary carcinoma (mFMC) and non-metastatic FMC (NmFMC) across various histological grades (HGs) and histological types (HTs) using liquid chromatography-tandem mass spectrometry (LC-MS/MS). Tissue samples were collected from 13 NmFMC, 26 mFMC and 13 healthy controls (CTRL). Samples were trypsinized and subjected to LC-MS/MS. Proteome results were analyzed based on the metastatic status, HGs and HTs of the samples. The findings revealed …

Dog Sniffing Biomechanic Responses In An Odor Detection Test Of Odorants With Differing Physical Properties, Lydia Burnett, Nicholas Hebdon, Pete A. Stevens, Monica Moljo, Lindsay D. Waldrop, Lauryn Degreeff

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Dogs are utilized in forensic science for their extensive scent detection capabilities. They are often considered the “gold standard” in field detection for targets such as illicit drugs and explosives. Despite their prevalence in the field, relatively little is known about how dogs interact with and transport volatile organic compounds through their olfactory system. In this study, two groups of dogs were utilized – Sport detection dogs (n=19) that participate in the National Association of Canine Scent Work and have achieved advanced standing through training and successful search competitions and law enforcement explosive detection dogs (n=8) which were included for …

Prevalence And Pathology Of Endoparasitic Infections Of Rock Pigeons (Columba Livia) In Taiwan, Chih-Li Yu, Yen-Li Huang

The Thai Journal of Veterinary Medicine

Pigeon racing is popular in Taiwan, but most lofts are located on residential roofs or in attics, which means pigeons could potentially spread parasites to humans. It is necessary to investigate the prevalence and diversity of endoparasitic infections in pigeons. This study investigated endoparasitic infections in 301 pigeons (both loft-kept racing and feral pigeons) in Taiwan using gross and histopathological examinations. The identified endoparasites included Trichomonas spp. (30.2%, 91/301); Ascaridia spp. (22.3%, 67/301); Haemoproteus spp. (20.6%, 62/301); Eimeria spp. (11.0%, 33/301); Capillaria spp. (7.3%, 22/301); Hexamita spp. (6.0%, 18/301); Raillietina spp. (4.7%, 14/301); Heterakis spp. (2%, 6/301); and Dispharynx sp., …

Small Beef-Packer Resilience During The Covid-19 Pandemic: Evidence And Policy Implications, Azzeddine Azzam, Sunil P. Dhoubadel, Binod Khanal

Cornhusker Economics

As part of a larger research project on the economics of beef supply chain resilience to natural disasters, financed in part by a grant from the USDA National Institute of Food and Agriculture, we obtained information from 289 processing plants across the United States about their operations during the peak COVID-19 period of March to June 2020 via a telephone survey. We collected data on plant type (slaughter, processing, both), the dominant livestock processed by the plant (predominantly beef, pork, poultry, and sheep/goat), plant capacity (maximum and typical capacity in slaughter head/day), age of establishment, and, whether the plant ceased, …

Prospect And Problem Analysis Of Industry Data Application In Livestock And Poultry Breeding, Yiran Chen, Zhuqing Xiong, Jiaogen Zhou, Quan Wang, Jiancheng Shu, Yinfa Yan, Lanlin Yang, Zemeng Feng, Benhai Xiong, Yulong Yin

Bulletin of Chinese Academy of Sciences (Chinese Version)

Livestock and poultry breeding is a pillar industry in China. The massive data in livestock and poultry breeding is a valuable resource. The market-oriented utilization of livestock and poultry breeding data plays an important role in improving industry standards, increasing industry profits, and driving the development of the entire industry chain. Currently, based on the demand for marketization of livestock and poultry breeding data, the application of new generation information technologies such as artificial intelligence and the Internet of Things in the process of livestock and poultry breeding to collect breeding process data, after de-sensitization and de-classification, through cloud computing, …

Body Condition Scoring For Sheep, Abigail Johnson, Reganne K. Briggs, Chad Page

All Current Publications

Body condition scoring is a helpful tool for sheep producers to use to evaluate the status of their flock. This fact sheet illustrates how to condition score sheep and the importance of condition scoring on production.

Snakehead Neurocranium, Alexis K. Crass, Megan E. Martiello, Matthew D. Gassmann, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Porcine Peritoneal Macrophages Are Susceptible To Porcine Reproductive And Respiratory Syndrome Virus Infection, Kassandra Durazo-Martinez, Jayeshbhai Chaudhari, Sushmita Kumari, Hiep Vu

Department of Animal Science: Faculty Publications

Previous studies have suggested that porcine peritoneal macrophages (PPMs) are resistant to PRRSV infection, whereas porcine alveolar macrophages (PAMs) are highly susceptible. This contrast is intriguing, as both cell types belong to the same monocyte/macrophage family. The current study aimed to investigate the host factors contributing to the differing susceptibility of PPMs and PAMs to PRRSV infection. We found that PPMs exhibit a higher frequency of CD14+ cells compared to PAMs, suggesting a more immature macrophage phenotype in PPMs. Importantly, PPMs expressed both CD163 and CD169, the key receptors for PRRSV entry, although the frequency and intensity of CD163 and …