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Genetic Analysis Of Methionine Restriction-Associated Mitochondrial Unfolded Protein Response Signaling., Josh D. Dodge

Biology Dissertations - Archive

The lifespan of an organism is dictated by various genetic and environmental factors. One such determinant is the health of mitochondria which are organelles that mediate various critical cell functions including a significant role in generating the vast supply of cellular energy. Indeed, the gradual decline of mitochondrial function is believed to be a hallmark and possible cause of aging. Paradoxically, mild mitochondrial dysfunction early in life extends lifespan in various model organisms. Cells use diverse approaches to promote mitochondrial homeostasis, including the transcriptional reprogramming of cells by mitochondrial unfolded protein response (UPRmt) to mitigate mitochondrial stress. Consistently, UPRmt activation …

Wild Horse Overpopulation- Consequences And Environmental Effects, Tessa M. Eslick Ms.

Undergraduate Theses, Professional Papers, and Capstone Artifacts

When considering wild horse overpopulation, there are many different facets of the issue that need to be addressed. Wild horse overpopulation is a significant issue across the American West, particularly on lands managed by the Bureau of Land Management( BLM). The largest populations are often found in Nevada, other states include California, Oregon, Utah, Wyoming, Washington, and Arizona. Whether there are thousands of horses on many acres of land, or hundreds spread across smaller reservations or public lands, the effects of their overpopulation remain as imminent as ever. Overpopulation is causing ecological damage and strain on resources leading to concerns …

Derivation Of The Maintenance Energy Requirements In Growing Jersey Heifers: Supplementary Table S1, Addison L. Carroll, Michael J. Vandehaar, Paul J. Kononoff

Department of Animal Science: Faculty Publications

Supplemental table for Addison L. Carroll, Michael J. VandeHaar, and Paul J. Kononoff. Derivation of the maintenance energy requirements in growing Jersey heifers. Journal of Dairy Science (2025).

Diversification Of Avifauna In The Darién Highland Region: Ecological Niche Modeling, Phylogeography And Morphology To Explore Speciation In The Montane Species Myadestes Coloratus, Chlorospingus Tacarcunae And Margarornis Bellulus., Jorge L. Garzon Vasquez Mrs

Theses and Dissertations

Montane regions in the Neotropics are hotspots of endemism and biodiversity, yet their species are especially vulnerable to the impacts of climate change and geographic isolation. This thesis investigates the evolutionary and ecological dynamics of three bird species endemic to the Darién Highlands of eastern Panama: Myadestes coloratus, Chlorospingus tacarcunae, and Margarornis bellulus. Through an integrative approach combining ecological niche modeling, morphometric analysis, and genomic data from ultraconserved elements (UCEs) and mitochondrial DNA, the study explores the historical biogeography, current distribution patterns, population structure, and phenotypic differentiation of these montane taxa. Ecological niche models revealed that suitable habitat …

Equine Hair Cortisol Concentration And The Effects Of Season, Storage Method, And Personality Traits, Savannah M. Rivers, Grace A. Robertson, Thomas Powell, Lydia O'Sullivan, Shea Porr

Murray State Theses and Dissertations

Stress exists everywhere, for survival, adaptation is necessary. These adaptations directly reflected the stresses the animal experienced and demonstrated the ability to cope. An animal that could not cope could not survive. Stressful experiences resulted in behavior patterns for each animal. Consistent behavior can be defined as personality [1]; therefore, stress could directly influence personality by changing behavior.

Stress research helped analyze and identify animal personality traits, especially horses. Human-horse pairings partially relied on personality traits and, when considered, often led to improvements in welfare [2]. There are various tools to assess personality, one being Equine Personality Assessment [3]. The …

Wildlife Distribution Mapping And Analysis In Gorongosa National Park, Mozambique, Using Site And Satellite Imagery Data, Pinho Joaquim Munhequeira Mr

Murray State Theses and Dissertations

One of Mozambique's most important conservation sites, Gorongosa National Park has seen critical ecological changes over the past several decades resulting from climate variability, habitat loss, and political instability. This research integrates Geographic Information Systems (GIS) and remote sensing to examine the relationship between vegetation dynamics and wildlife population, and distribution. The main goals of this study are to evaluate the spatial distribution of particular wildlife species: buffalo (Syncerus caffer), elephant (Loxodonta africana), hippopotamus (Hippopotamus amphibius), and zebra (Equus quagga), and determine the impact of vegetation density and land cover on their …

Examining The Effects Of Songbird Nest Boxes And Habitat On Avian And Arthropod Communities In A Vineyard Ecosystem, Eleanor Macdonald

Cal Poly Humboldt theses and projects

Agricultural expansion threatens biodiversity, but integrating insectivorous birds into vineyard ecosystems may support both conservation and ecosystem services. We tested how nest boxes and habitat composition influence avian and arthropod communities in Napa Valley vineyards using a before-after, control-impact experiment across 20 sites. During the 2023-2024 breeding seasons we conducted avian point counts, sampled key pest and beneficial arthropods, and collected fecal samples from adult and nestling tree swallows (Tachycineta bicolor) and western bluebirds (Sialia mexicana) to detect vineyard pest DNA. Nest boxes significantly increased swallow and bluebird abundance within one year; swallow responses were strongest …

Jaguar (Panthera Onca) Population Status And Conservation Needs In Panama Revealed Using Spatial Density And Occupancy Models., Rebeca E. Becdach

Cal Poly Humboldt theses and projects

Jaguars (Panthera onca) are key predators and the largest felid in the Americas. The species is listed as near threatened globally due to habitat loss, fragmentation, and human persecution. Their population decline can negatively affect the structure and functioning of the ecosystems they inhabit. Conservation efforts for jaguars and their habitat require understanding jaguar populations and how they are impacted by human presence across their range. This information is lacking in Panama, a critical portion of the Jaguar range. Panama forms a narrow land bridge connecting Central and South America, integral to wildlife movement, including jaguars, across both …

Investigating Fish Communities As Part Of The Food Web In Artificial Tidal Wetland Ponds Of Humboldt Bay, Ca, Lily M. Olmo

Cal Poly Humboldt theses and projects

In the face of global wetland loss, artificially created wetlands have the potential to restore ecosystem services for humans while also providing habitat for fish and wildlife. This study explored fish communities in three understudied artificial wetland ponds that are connected to Humboldt Bay in northern California and known to be important wildlife foraging areas. The objectives of this research were to 1) Characterize the environmental conditions of each pond, 2) Calculate the relative catch, richness, diversity, and biomass of fish in each pond, 3) Describe the movement of fish into and out of the ponds with the tides, and …

Effects Of Experimental Structural Retention Position And Aggregation On Avian Communities In Managed Forests Of The Pacific Northwest, U.S., Aidan M. Healey

Cal Poly Humboldt theses and projects

Managed forest lands in Oregon and Washington produce wood products and host diverse bird communities, though standing dead snags are often limited. State forest practices rules governing forest harvest dictate retention of a minimum number of trees when forests are clearcut harvested. However, little research has explored how the slope position and aggregation of retention, and the supplemental inclusion of mechanically created snags, affects use of these forest units by wildlife, especially highly mobile taxa such as birds. I used an avian point count sampling approach, within a replicate-block experiment dictating unit-level slope position, aggregation, and snag retention treatments, to …

Bat Species Diversity In The Klamath Basin Prior To Dam Removals, Ryan Page Matilton

Cal Poly Humboldt theses and projects

River ecosystems make up a small percentage of the earth’s surface, but they support high levels of biodiversity and attract high levels of human use. Dams, for example, disrupt a river’s natural course and flow, alter water temperatures in the stream, redirect river channels, transform floodplains, and fragment river continuity, which affects ecological balance and food webs. The Klamath River in northern California, which has been dammed for the last century, experienced dramatic disruptions including a large fish die-off in 2002. With the negative impacts of the Klamath dams apparent, multiple entities negotiated to remove the dams and restore the …

Habitat Use And Selection Of Silver Carp In The Lower Wabash River System, Coy B. Blair

Masters Theses

The spatial ecology of non-native species in invaded systems remains relatively poorly understood despite the importance of suitable habitat in the success of invasion. Silver Carp Hypophthalmichthys molitrix are a highly invasive non-native species with established populations throughout the Midwestern United States. Much research has focused on habitat use of bigheaded carp in large river systems, though invasion risk remains high in smaller systems, such as tributaries of the Great Lakes and the Ohio River. The Wabash River, a unique system in the Midwest, remains largely un-impounded and is comparable to many of the smaller riverine systems at risk of …

Utilization Of Golden Pennycress In Broiler Diets, Marley M. Knowles

Theses and Dissertations

The objective of this study was to evaluate performance in broiler chickens fed diets containing golden pennycress meal (GPCM), with and without a flavor additive. Golden pennycress (Thlaspi arvense) is a winter cover crop grown in the Midwest that is rising in popularity as a cash crop used for biofuel production. After oil is pressed out of the seeds, a meal remains that is usually discarded. Incorporation of this meal (23% protein, 15% fat) into feedstuffs for broilers would be an efficient way to make biofuel production more sustainable. In one study, Cornish Cross three-day-old chicks (n=12) were …

Assessing The Behavioral And Health Effects Of Turtle Racing On Eastern Box Turtles (Terrapene Carolina Carolina), Michelle Weaver

Murray State Theses and Dissertations

To make informed management decisions regarding box turtles (Terrapene spp.) and other turtle species, one must understand what influences them at multiple levels of biological organization. Common influences include the pet trade, urbanization, habitat degradation, and disease. One factor that has not been studied but could influence turtles at multiple levels of biological organization is turtle racing. It is common practice to use wild caught turtles at these events because there is a lack of regulation and enforcement. My study focused on evaluating the effects of turtle racing on eastern box turtles (Terrapene carolina carolina; hereafter EBTs) …

Comparative Study Of Single Imputation Techniques For The Prediction Of Missing Dairy Data, Ahmed M. Gad Prof, Ahmed Abdelhakim Ahmed Mr, Eman Manaa Prof, Basant Shafik Dr, Sakr Mostafa Prof

Business Administration

Dairy farm records are a crucial component of effective livestock business management. Record analysis allows a farm’s owner to make informed decisions. Incomplete records are less useful for data analysis, so it's important to handle missing values correctly. This study compares different imputation methods for handling missing values in a dataset of dairy records comprising 997 records collected from 234 cows between 2012 and 2022. The dataset was screened against records with missing values and then deleted, resulting in 858 observations from 200 animals. There were missing values in two variables, with a missing percentage of 13.9%: days in milk …

Integrating Invasion Risk And Habitat Suitability To Guide Invasive Species Management In Wetlands, Lakes, And Rivers, Brenden M. Elwer

Electronic Theses and Dissertations

Invasive species disrupt ecosystems by altering habitats, competing with native species, and disrupting food webs. The northern Great Plains is an ecologically important region with many wetlands, lakes, and rivers that are under threat from two invasive species, Bighead (Hypophthalmichthys nobilis) and Silver Carp (H. molitrix; bigheaded carp). These large planktivores change the abundance and composition of phytoplankton and zooplankton communities which alters prey for native mussels, fishes, and, potentially, waterfowl. Bigheaded carps have invaded a portion of the Northern Great Plains, and preventing further spread is a primary management goal. My work assists these efforts by providing tools to …

Adaptation For Whom? Understanding The Impacts Of Dyke Policies On Small-Scale Farmers In Ca Mau Province Of Vietnam, Nguyen Minh Quang, Nguyen Van Minh, Nguyen Vo Chau Ngan, Martha B. Lerski

Publications and Research

Low-lying deltas worldwide are extremely vulnerable to sea-level rise. As the risks of climate-induced flooding become increasingly clear, the thirst for infrastructure-driven adaptation increases. This highlights a patent need to understand the impacts of engineering adaptation solutions, especially those targeting built structures such as dykes and sluices, on farmers from a bottom-up, farmer-centred perspective. The study addresses this call by examining cases where dyke policies, while successful in some dimensions, have undermined small-scale farmer livelihoods in Ca Mau ― Vietnam’s southernmost rural province. It identifies areas in need of attention and adds empirical data related to this group of farmers. …

Identifying Intangible And Biocultural Heritage Elements Toward Environmental Understanding: Engaging Stakeholders Through Art, Martha B. Lerski

Publications and Research

Grounded in a case study in Barbuda in the Caribbean, this research examines sustainability from the perspective of what arts and heritage can contribute to community engagement and local and broader understandings about the environment. This article documents a growing body of literature recognizing the role of arts and culture, including local knowledge and traditional ecological knowledge (TEK), in climate change endeavors. Art and TEK present expansive world views. Contextual information situates research done on the island of Barbuda pre- and post-Hurricane Irma. Visual arts workshops engaged community members in mixed methods research. Results documented cultural elements, particularly intangible and …

Bird Watching In Chitral, Sehba Akhter

Institute for Educational Development Pakistan (IED-PK) Archives

This booklet comprises brief information about different species of thrush birds found in Chitral, identified by different researchers and field guides. The sources used include Helm Field Guide, Birds of Pakistan by Richard Grimmett, Tom Roberts, Tim Inskipp, and The Birds of Pakistan by T.J Roberts. This booklet aims to help the people of Chitral know about the birds they see every day.

Ovarian Response, Endocrine Environment, And Pregnancy-Associated Glycoproteins In Beef Cows Using The 7 & 7 Synchronization Protocol, Hunter Haberman

Electronic Theses and Dissertations

This Review aims to provide an overview of the bovine estrous cycle and pregnancy establishment, beginning with follicular development, luteolysis, maternal recognition of pregnancy and early embryonic development. Manipulating the estrus cycle with synchronization protocols is a critical aspect of the beef industry and has greatly improved the efficiency of artificial insemination. This review will evaluate various strategies to synchronize estrus from the very basic to more advanced synchronization protocols. There are many factors that affect the success of the protocol, and many studies have been done to evaluate the estrus cycle to reach the highest level of success from …

Development Of A Stable Isotope Method To Measure Protein Fractional Synthesis Rate In Equine Skeletal Muscle, Antoinette E. Foliart

Theses and Dissertations--Animal and Food Sciences

Muscle mass is regulated by the balance between muscle protein synthesis and degradation. Previous research in horses has shown that the signaling pathway that regulates protein synthesis is upregulated with increasing protein intake; however, whether this corresponds to an increase in muscle protein synthesis rates had not been previously explored. The objective of this study was to develop an isotopic method to measure muscle protein fractional synthesis rate (FSR) in horses following graded protein intake. Eight mature Thoroughbred horses were studied using a randomized cross-over design. Horses consumed meals containing 0 (No), 0.125 (Low), 0.25 (Med), or 0.5 (High) g …

If You Give A Tadpole A Chemosensory Stimulus: Detection Of Invasive Predatory Cues And Signs Of Conspecific Communication In Pseudacris Sierra Tadpoles, Faben Tesfazion

Scripps Senior Theses

Amphibians are at disproportionately higher risks of extinction than all other vertebrate classes, and a major causing factor is invasive predation. The American bullfrog (Lithobates catesbeianus), native to Eastern North America, is a notorious invasive species which preys on native Sierran treefrogs (Pseudacris sierra) in Northern and Central California. These treefrogs have yet to be placed on any Special Animals List, suggesting the presence of adopted behaviors against predation. Past studies have documented the importance of chemical sensing in anuran tadpoles as predator detection tools. This study tests if Sierran treefrog tadpoles can recognize invasive chemical …

Husbandry Of Jellyfish And Ctenophores: Why Gelatinous Forms Thrive In Their Natural Habitat And Yet Often Struggle To Survive In Aquaria, Regina Garza Ramirez

Undergraduate Theses and Capstone Projects

Recent observations in the behaviors of several gelatinous forms in the wild have demonstrated that human impacts to their environment have likely accelerated growth of their populations tremendously. Interestingly enough, population growth of jellyfish and ctenophores in aquariums and artificial habitats is less often observed under controlled conditions, while they often bloom in rapidly changing environments of nature. Seeking the knowledge of aquarists and researchers that have worked directly with gelatinous animals through interviews, and documenting the experiences of each individual, allowed acquisition of data that can be used to compare the reproductive success of these animals in captivity and …

Effect Of Pulsed Electromagnetic Field Therapy On Milk Quality In Organic Dairy Cows, Kayla A. Young

Honors Theses and Capstones

Organic dairy systems are limited when it comes to the use of antibiotics and pharmaceuticals which creates opportunities to explore alternative treatments to promote cow health. Pulsed electromagnetic field therapy (PEMF), a form of electromagnetic stimulation, promotes various types of healing for both animal and human medicine. Our objective was to explore the effect of PEMF on milk yield and composition in organic dairy cows. Mid-lactation Jersey cows (n = 35) of various parities were randomly assigned to 1 of 3 treatments: 1) control (CON; n = 12); no PEMF, 2) once daily PEMF (PEMF1; n = 12), …

Jbs’S Initial Public Offering: Threats To Environmental And Human Rights, Kayla Thompson

Indiana Journal of Law and Social Equality

This paper centers around the decision to be made regarding JBS, the world’s largest meat company, wanting to list shares on the New York Stock Exchange (NYSE), and the environmental and social impacts that could result from the Security and Exchange Commission’s (SEC) approval. JBS has been at the center of various controversies over the last several years, including sourcing cattle from ranches acquired through illegal deforestation, engaging in greenwashing practices, incorrectly reporting greenhouse gas emissions, and engaging in human rights abuses. Many environmental groups have filed complaints with the SEC concerning JBS’s bid to list on the NYSE. The …

Noaa Oceanic And Atmospheric Research Ocean Carbon Observing Science Plan Fy25 To Fy35, United States National Oceanographic And Atmospheric Administration

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

United States National Oceanographic and Atmospheric Administration oceanic and atmospheric research ocean carbon observing science plan for fiscal years 2025 through 2035.

Effects Of Insect Meals On Fish Digestibility, Blood Parameters, And Economic Performance: A Meta-Analysis, M. A. Aaqillah-Amr, A. Hidir, M. Ikhwanuddin, N. A. Fatan, R. Muhammad-Rahimi, S. Ning-Shahira, R. G.N. Siankhe, G. W. Vandenberg, C. M. Tanga, R. Yossa

All Peer-Reviewed Publications

This review examines the use of insect meal (IM) as a substitute for fishmeal (FM) in fish feeds within the past decade. While global interest in this alternative is growing, research on its effects on fish digestibility, blood parameters, and economic performance has been limited. Meta-analysis on the apparent digestibility coefficient revealed a negative effect summary on dry matter (0.92) and crude lipid (0.51), although the difference between the two groups was relatively minor. However, a positive effect summary was reported in the apparent digestibility of crude protein (0.12), suggesting a potential advantage in the utilization of protein by fish …

The Impact Staphylococcus Aureus Has On Conventional And Organic Dairy Herds In New Hampshire And New York, Jacqueline Rose Holmes

Honors Theses and Capstones

Staphylococcus aureus is a potentially virulent bacterium that causes mastitis in dairy cattle. The toxins produced from S. aureus impact host immunity, damage the mammary gland, and can adapt to cause antimicrobial resistance. It is important to manage both organic and conventional farms correctly by practicing proper hygiene while milking and providing a clean environment. There is a significant increase of S. aureus cases on organic farms compared to conventional, so there may be ways in which organic management and treatment options could be altered to reduce economic loss and animal suffering. The thesis focuses on the involvement S. aureus …

Developing A Ninhydrin Assay To Determine Methionine And Lysine Loss From Rumen Protected Amino Acid Supplements, Ashley K. Miske

Honors Theses and Capstones

No abstract provided.

The Effects Of Heat Stress On The Rumination In Lactating Dairy Cows, Kailey Anne Deighan

Honors Theses and Capstones

This study aimed to (1) investigate the association between Temperature-Humidity Index (THI) and rumination activity patterns in lactating dairy cows, and (2) explore the breed-specific impacts of THI on rumination time in Holstein and Jersey cows. The first hypothesis was that higher THI values would be associated with decreased rumination time (RT). The second hypothesis proposed that Holsteins, due to their lower heat tolerance, would experience greater reductions in RT than Jerseys under heat stress. From June 1 to October 1, 2024, daily climatic data were collected in New Hampshire using VisualCrossing to calculate THI. Each day was categorized into …