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Identification Of Loci Controlling Adaptation In Chinese Soya Bean Landraces Via A Combination Of Conventional And Bioclimatic Gwas, Ying-Hui Li, Delin Li, Yong-Qing Jiao, James C. Schnable, Yan-Fei Li, Hui-Hui Li, Huai-Zhu Chen, Hui-Long Hong, Ting Zhang, Bin Liu, Zhang-Xiong Lui, Qing-Bo You, Yu Tian, Yong Guo, Rong-Xia Guan, Li-Juan Zhang, Ru-Zhen Chang, Zhiwu Zhang, Jochen Reif, Xin-An Zhou, Patrick S. Schnable, Li-Juan Qiu

Department of Agronomy and Horticulture: Faculty Publications

Landraces often contain genetic diversity that has been lost in modern cultivars, including alleles that confer enhanced local adaptation. To comprehensively identify loci associated with adaptive traits in soya bean landraces, for example flowering time, a population of 1938 diverse landraces and 97 accessions of the wild progenitor of cultivated soya bean, Glycine soja was genotyped using tGBS. Based on 99 085 high-quality SNPs, landraces were classified into three subpopulations which exhibit geographical genetic differentiation. Clustering was inferred from STRUCTURE, principal component analyses and neighbour-joining tree analyses. Using phenotypic data collected at two locations separated by 10 degrees of latitude, …

Economic Contribution Of The Agricultural Sector To The Arkansas Economy In 2017, Leah English, Jennie Popp, Wayne Miller

AAES Research Reports and Research Bulletins

Agriculture and associated agricultural activities are major contributors to the Arkansas economy. Agriculture is defined as the sum of agricultural production and processing activities, unless otherwise specified, and includes crop and animal production and processing, agricultural support industries, forestry and forest products, and textile goods. Agriculture contributes to the economy through direct agricultural production and value-added processing, and also leads to economic activity in other parts of the economy. This report is the eleventh in a series of reports examining agriculture’s economic contribution to the Arkansas economy. The total economic contribution of agriculture (direct, indirect, and induced effects) on value …

Herbicide Drift Influence On Amaranthus Spp. Herbicide Resistance Evolution, Bruno Canella Vieira

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The adverse consequences of herbicide drift towards sensitive crops have been extensively reported in the literature. However, no information is available on the consequences of herbicide drift onto weed species inhabiting boundaries of agricultural fields. Exposure to herbicide drift could be detrimental to long-term weed management as several weed species have evolved herbicide resistance after recurrent selection with low herbicide rates. Despite the herbicide drift exposure and its potential implications on resistance evolution and weed management, resistance prone weed species such as Palmer amaranth (Amaranthus palmeri) and waterhemp (Amaranthus tuberculatus) are often neglected and not properly …

Climate Change Impacts On Winter Wheat Yield In Northern China, Xiu Geng, Fang Wang, Wei Ren, Zhixin Hao

Plant and Soil Sciences Faculty Publications

Exploring the impacts of climate change on agriculture is one of important topics with respect to climate change. We quantitatively examined the impacts of climate change on winter wheat yield in Northern China using the Cobb–Douglas production function. Utilizing time-series data of agricultural production and meteorological observations from 1981 to 2016, the impacts of climatic factors on wheat production were assessed. It was found that the contribution of climatic factors to winter wheat yield per unit area (WYPA) was 0.762–1.921% in absolute terms. Growing season average temperature (GSAT) had a negative impact on WYPA for the period of 1981–2016. A …

Biomethane Production From Distillery Wastewater, Zachary Christman

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Distillery wastewater treatment is a great ecological problem, for example, India produces 2.7 billion liters of alcohol that results in 40 billion liters of wastewater. However, this material can be seen as a resource since 11 million cubic meters of biogas at 60% methane could be produced in addition to cleaning the water. The distillery has two options of what to do with the biogas. The first is to use the biogas to fuel the distillery making the production plant more energy efficient and removing some of the need to buy natural gas. The other is to upgrade the biogas …

Evaluation Of Host Resistance And The Utilization Of Organic Amendments To Manage Macrophomina Crown Rot Of Strawberry In California, Jonathan W. Winslow

Master's Theses

The production of strawberries can be severely limited by soilborne plant pathogens, insects and weeds. Macrophomina phaseolina is a problematic soilborne fungal pathogen in California strawberry production inciting the disease Macrophomina crown rot. When established, the pathogen can cause extensive plant decline and mortality. Host resistance will be a critical tool for managing this disease and guiding breeding programs in the post methyl bromide era. Evaluation of host resistance in strawberry germplasm to M. phaseolina was evaluated through phenotypic assessments of disease incidence. A total of 90 strawberry cultivars and elite selections were included in a replicated field trial conducted …

Introduction To Sorghum Paper Production, Zachary Christman

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Sorghum is a tall grass used for many commercial products such as fodder and syrup. The 10 to 15 feet stalk of the plant has lower lignin than wood and provides a fiber length of 2.31 mm in the outer covering and 1.38 mm for the leaf. Sorghum fiber makes a high quality, strong paper suitable for printing, packaging and paperboard.

Mining For Biological Control Agents Against B. Glumae, The Causal Agent Of Bacterial Panicle Blight Of Rice., Katherine Anne Wilkinson

Graduate Theses and Dissertations

Burkholderia glumae is the causal agent of the emerging disease, Bacterial Panicle Blight of rice, a serious disease that can significantly decrease yield and poses a threat to rice production worldwide. This thesis is concerned with searching for a biological control agent to control this disease. Plant associated microbes are a good source of beneficial bacteria which can be exploited for use as a biological control agent. It is possible that the microbiomes of cultivars which are known to be more resistant to plant pathogens may contain more microbes which inhibit those pathogens and therefore could be used as biological …

The Impact Of Fall Armyworm, Spodoptera Frugiperda (J.E. Smith), Feeding And Mechanical Defoliation On Growth And Yield Of Rice, Oryza Sativa (L.), Layton Denman Mccullars

Graduate Theses and Dissertations

The fall armyworm, Spodoptera frugiperda (J.E. Smith), (FAW) is a serious pests of many crops, and can be observed feeding throughout the entire growing season on rice, Oryza sativa, (L.). A new defoliation based threshold would help rice growers and consultants make more economically sound decisions for FAW. Work from this thesis focuses on determining the amount of damage caused by FAW feeding at different growth stages and effective insecticide seed treatments for controlling this pest.

Field plots were mechanically defoliated to determine grain yield loss across multiple growth stages and defoliation percentages. Results indicated that defoliation in late vegetative …

Analysis Of Permaculture’S Water Conservation And Crop Supporting Abilities, Hannah Chaney

Mahurin Honors College Capstone Experience/Thesis Projects

In the Middle East, virtually all agriculturally viable land is under high threat of desertification due to poor land and resource management and climate change. Mulching using straw flakes (straw mulch permaculture) is a method commonly used in successful dry land permaculture projects in the Middle East. We proposed that straw mulch permaculture would increase the amount of soil moisture during dry periods and that this method would not impact the growth and survival of the crop. In order to test this hypothesis, we took soil samples from plots with and without straw mulch permaculture in Bowling Green, KY and …

Evaluation Of Drought Tolerance In Arkansas Cowpea Lines At Seedling Stage, Qirui Cui

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

Cowpea [Vigna unguiculate (L.) Walp.] is not only a healthy, nutritious and versatile leguminous crop, it also has a relatively high adaptation to drought. Researches have shown that cowpea lines have a high tolerance to drought, and many of them can survive over 40 days under very hot and dry conditions. The cowpea (Southern pea) breeding program at the University of Arkansas (UA) has been active for over 50 years and has produced more than 1,000 advanced breeding lines. And the purpose of this study is to evaluate the drought-tolerant ability in Arkansas cowpea lines and use the drought tolerant …

Use Of Annual Forage Mixtures In Crop/Livestock Production Systems In Nebraska, Nathan Paul Pflueger

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Success of integrating annual forages into crop and livestock systems throughout Nebraska may be variable depending on field location, field/forage crop management, and precipitation. There are many different warm- and cool-season annual forage species available for integrating crop and livestock systems at different times of the year. Mixtures of cereal species, such as oats (Avena sativa)) and spring peas (Pisum sativum)), are often used to optimize forage quantity and forage quality. Our two-year, three location study across Nebraska’s precipitation gradient suggested that forage quantity and quality may vary by location due to different precipitation amounts received …

Effect Of Soil-Applied Protoporphyrinogen Oxidase Inhibitor Herbicides On Soybean Seedling Disease, Nicholas J. Arneson

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Seedling disease is one the most economically important diseases of soybean in the United States. It is commonly caused by Fusarium spp., Rhizoctonia solani, Pythium spp., and Phytophthora sojae, alone, or together as a disease complex. Fungicide seed treatments continue to provide the most consistent management of seedling diseases. Soil-applied protoporphyrinogen oxidase (PPO) inhibitor herbicides are used preemergence in soybean production to manage several broadleaf weeds. Applications of PPO-inhibitors can result in phytotoxic injury to soybean when environmental conditions are not favorable for soybean growth. These environmental conditions can favor seedling disease development as well. In this thesis, two …

Integrated Management Of Phytophthora Stem And Root Rot Of Soybean And The Effect Of Soil-Applied Herbicides On Seedling Disease Incidence, Vinicius Castelli Garnica

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soybean seedling diseases and Phytophthora stem and root rot (PSRR; caused by Phytophthora sojae) are two of the most economically important diseases in North Central U.S. Remarkable differences in disease incidence occur each year, which demonstrate that abiotic and biotic factors must interact for disease onset and development. During 2017 and 2018, field studies were conducted to (i) address the efficacy of seed treatment and genetic resistance for PSRR management on soybean population, canopy coverage (CC), and yield, and (ii) investigate potential interactions between pre-emergence (PRE) herbicides and the incidence of seedling diseases in alluvial soils in Nebraska.

Despite …

Dna Barcoding Of Pratylenchus From Agroecosystems In The Northern Great Plains Of North America, Mehmet Ozbayrak

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Pratylenchus species are among the most common plant parasitic nematodes in the Great Plains Region. The objectives of this study were to barcode Pratylenchus specimens for species identification in the Great Plains region using mitochondrial CO1 DNA barcode. In order to (1) determine species boundaries, (2) assess the host associations of barcoded Pratylenchus, (3) to determine the distribution patterns across the Great Plains Region and, (4) to evaluate the species status of P. scribneri and P. hexincisus by a multivariate morphological analysis of haplotype groups identified by DNA barcoding. Soil samples, primarily associated with eight major crops, were collected …

Establishment Of Perennial Legumes With An Annual Warm-Season Grass As A Companion Crop, Martina N. La Vallie

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The yields of perennial forage legumes are often hindered during the establishment year due to slow germination rates and weed competition. This study was conducted to determine if sorghum-sudangrass (Sorghum bicolor x S. bicolor var. sudanese) is a compatible annual companion crop for increased forage production, weed suppression, and legume establishment. In 2016, sorghum-sudangrass was paired with alfalfa (Medicago sativa L. ‘Ranger’), birdsfoot trefoil (Lotus corniculatus L.), Illinois bundleflower [Desmanthus illinoensis (Michx.) MacMill. ex B.L. Rob. & Fernald], purple prairie clover (Dalea purpurea Vent.), red clover (Trifolium pratense L.), and roundhead lespedeza (Lespedeza capitata Michx.). We studied effects of a …

Addressing The Challenges Facing Wheat Production: Nebraska And International Breeding Efforts, Sarah Blecha

Doctor of Plant Health Program: Dissertations and Student Research

Bread wheat, Triticum aestivum L., provides 20 percent of the global daily calorie intake. It is the third most important food crop, after rice and corn. Biotic challenges significantly reduce wheat yield; chemical control can be a solution but can be cost prohibitive for subsistence farmers. For many farmers, genetic resistance to biotic stresses can be the most cost effective solution.

The International Center for Agricultural Research in the Dry Areas (ICARDA) and the Nebraska Small Grains Breeding Program have been addressing these wheat production challenges. ICARDA is part of an international research consortium to increase wheat yield and tolerance …

Science Communication In Agriculture: The Role Of The Trusted Adviser, Lee Galen Briese

Doctor of Plant Health Program: Dissertations and Student Research

Agronomy is not simply the selling of agricultural products to farmers, nor is it the process of solving singular production problems. Agronomy is defined as the integrated, holistic perspective of agriculture (ASA, 2019) and “agronomists are specialists in crop and soil sciences, as well as ecology” (ASA, 2019). While scientific investigation and discovery are essential to understanding systems function, the tangible benefits from our knowledge stems from the application to solve problems. Clear communication is vital to successfully help stakeholders understand the importance of the science and help scientists understand the challenges stakeholders face. However, to successfully put science into …

The Evaluation Of Low-Use-Rate Zinc Fertilization Strategies On Seedling Canopy Coverage, Zn Concentration, Biomass, And Grain Yield, Maxwell David Coffin

Graduate Theses and Dissertations

Zinc (Zn) is the most common micronutrient deficiency in flooded rice (Oryza sativa L.). Some new Zn fertilization methods have been advertised, but have limited research supporting their efficacy. This study mainly compared the effect of Zn-seed treatment rate in combination with other low-use-rate Zn-fertilization methods to the standard of 11 kg Zn ha-1 as ZnSO4 on rice early-season canopy cover, tissue-Zn concentration, and grain yield. A secondary objective evaluated an alternative method (to seed treatment with ZnO) of enhancing seed-Zn concentration using post-heading foliar-Zn application on seedling tissue-Zn concentration and grain yield. For the main objective, rice seed was …

Assessment Of Control Of Ppo-Resistant Palmer Amaranth And Salvage Options In Herbicide-Resistant Cotton, Wyatt D. Coffman

Graduate Theses and Dissertations

Palmer amaranth has been the most limiting weed in cotton production in the state of Arkansas for many years. Recently, resistance of Palmer amaranth to the protoporphyrinogen oxidase (PPO)-inhibiting site of action has been discovered at various locations across the cotton-producing region of the state. Cotton varieties have been developed with resistance to synthetic auxin (WSSA Group 4) herbicides. However, research to date has shown PPO-resistant Palmer amaranth to be more difficult to control with herbicides that target alternative sites of action. Herbicide efficacy is also known to vary with weed size, varying spray parameters, and environmental conditions. Preliminary research …

Heat-Shock-Inducible Crispr/Cas9 System Generates Heritable Mutations In Rice, Soumen Nandy, Bhuvan Pathak, Shan Zhao, Vibha Srivastava

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Transient expression of CRISPR/Cas9 is an effective approach for limiting its activities and improving its precision in genome editing. Here, we describe the heat-shock-inducible CRISPR/Cas9 for controlled genome editing, and demonstrate its efficiency in the model crop, rice. Using the soybean heat-shock protein gene promoter and the rice U3 promoter to express Cas9 and sgRNA, respectively, we developed the heat-shock (HS)-inducible CRISPR/Cas9 system, and tested its efficacy in targeted mutagenesis. Two loci were targeted in rice, and the presence of targeted mutations was determined before and after the HS treatment. Only a low rate of targeted mutagenesis was detected before …

Untangling The Economic And Social Impediments To Producer Adoption Of Organic Wheat, Donya L. Ralph-Quarnstrom

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Consumer demand for organic products has shown double-digit growth in recent years encouraging the development of a wider range of goods (Greene, 2017). Americans with an annual household income under $30,000 actively purchase organic foods at nearly the same rate as households with over $75,000 in annual incomes, 42% versus 49% (Greene et al., 2017). Previous research observed the adoption of organic farming practices on a combination of different grains, fruits and vegetables, meat, and dairy products from across the globe. However, this is the first study to examine the adoption of organic wheat in the Western U.S. By addressing …

Using Cover Crops To Recycle Nutrients In An Arkansas No-Till Corn System, Kelsey Lynn Hoegenauer

Graduate Theses and Dissertations

Cover crops can provide many benefits to cropping systems including erosion control, weed suppression, and increased soil organic matter. Regardless of the intended goal for using cover crops, the changes to the nutrient flux in a cropping system caused by cover crops retaining and recycling nutrients needs to be considered in order to maximize the productivity of the following commodity crops. This research encompassed complementary greenhouse, field, and laboratory experiments to evaluate nutrient uptake and release by tillage radish (Raphanus sativus) and cereal rye (Secale cereale) cover crops, as well as the subsequent early-season recovery of recycled nutrients by the …

Model Gge Biplot Untuk Visualisasi Interaksi Genotip (G) X Naungan (E) Pada Jagung Toleran Naungan Pada Sistem Agroforestri, Muhammad Syafii, Dedi Ruswandi

Jurnal Kultivasi

Jagung adalah serealia penting di Indonesia yang bernilai ekonomis dan strategis untuk dikembangkan sebagai bahan baku pangan (food), pakan (feed), dan minyak (fuel). Varietas jagung yang toleran terhadap intensitas naungan merupakan solusi tepat untuk meningkatkan produksi jagung melalui pemanfaatan lahan agroforestri. GGE biplot adalah model untuk visualisasi dan interpretasi data hasil pengujian genotipe pada lingkungan berbeda. Visualisasi aspek genotipe (G) dan lingkungan (E), dan hubungan keduanya (GXE) digambarkan sebagai biplot. Tujuan adalah untuk seleksi genotipe jagung toleran naungan pada sistem agroforestri. Penelitian dilaksanakan pada Maret-Agustus 2014 di Kebun Percobaan Cimalaka Sumedang menggunakan Split Plot Design diulang 2 kali. Data dianalisis …

Perubahan Karakter Biokimia Dan Fisiologi Tanaman Kacang Hijau Pada Berbagai Kondisi Cekaman Kekeringan, Purwanto, Bambang Rudianto Wijonarko, Tarjoko

Jurnal Kultivasi

Penelitian ini bertujuan untuk mengkaji respons fisiologi dan biokimia tanaman kacang hijau terhadap cekaman kekeringan. Penelitian dilaksanakan di Screen House Exfarm Fakultas Pertanian Universitas Jenderal Soedirman Purwokerto dari bulan Maret sampai dengan Oktober 2018. Rancangan percobaan yang digunakan adalah Rancangan Acak Kelompok (RAK) dengan pola faktorial 3 x 3. Faktor pertama yang dicoba adalah tingkat kelengasan tanah, yakni kadar air kapasitas lapang sebagai kontrol, 75% kapasitas lapang, dan 50% kapasitas lapang. Faktor kedua adalah varietas unggul kacang hijau yang terdiri dari Varietas Vima 2, varietas Vima 3, dan Varietas Kutilang. Hasil penelitian menunjukkan bahwa cekaman kekeringan sampai 50 persen kapasitas …

Mulch Treatment Effect On Weed Biomass And Yields Of Organic Sweetpotato Cultivars, Sochinwechi I Nwosisi, Dilip Nandwani, Dafeng Hui

Biology Faculty Research

Weeds are a challenge, particularly in organic agriculture, due to restrictions on the application of synthetic herbicides and chemicals. A preliminary cultivar evaluation trial of organic sweetpotato was conducted in 2015 at Tennessee State University certified organic farm. Three mulches: wheat straw, pine needle, and black plastic mulch, along with a control (no mulch), were evaluated for their weed management abilities in a sweetpotato field. Four cultivars of sweetpotato were planted in 0.91 m wide mulch beds with 0.3 m row spacing anddrip irrigated with four replications. Data was collected during the growing season on the dry weight of weeds …

Partisi Bahan Kering Bibit Kopi Arabika (Coffea Arabica L.) Yang Diberi Asam Humat Dan Pupuk Npk Tablet, Santi Rosniawaty, Rija Sudirja, Mira Ariyanti, Syariful Mubarok, Rachmad Akbar

Jurnal Kultivasi

Kopi merupakan salah satu produk perkebunan penghasil devisa negara. Saat ini tanaman kopi menjadi andalan beberapa daerah di Indonesia dengan kekhasannya. Namun demikian produksi kopi masih perlu ditingkatkan karena masih tidak sesuai dengan potensi produksi. Peningkatan produksi kopi dapat diawali dari pembibitan. Pengelolaan bibit yang baik dapat dilakukan dengan pemberian pupuk NPK tablet dan asam humat, yang nantinya akan mempengaruhi fotosintesis dan fotosintat yang dihasilkan. Tujuan penelitian adalah untuk melihat partisi bahan kering bibit kopi melalui bobot kering bagian-bagian tanaman pada bibit kopi yang diberi NPK tablet dan asam humat. Percobaan dilakukan di bulan Februari 2017 sampai bulan April 2017 …

Pengaruh Asam Humat Dan Pupuk Kandang Sapi Terhadap Pertumbuhan Tanaman Kakao (Theobroma Cacao L.) Belum Menghasilkan Klon Sulawesi 1, Arkan Azis Kusuma, Santi Rosniawaty, Yudithia Maxiselly

Jurnal Kultivasi

Permasalahan tanaman kakao di Indonesia adalah produktivitasnya rendah. salah satu penyebabnya akibat kekurangan nutrisi pada fase tanaman belum menghasilkan TBM. Upaya yang dapat dilakukan adalah memberikan pupuk organik, yaitu asam humat dan pupuk kandang sapi. Percobaan ini bertujuan untuk mengetahui pengaruh macam pupuk organik (asam humat susulan dan pupuk kandang sapi) terhadap pertumbuhan tanaman kakao klon Sulawesi 1 umur 7 bulan setelah tanam. Percobaan dilakukan dari bulan September sampai dengan Desember 2017 di Kebun Percobaan Ciparanje Fakultas Pertanian Universitas Padjadjaran, Jatinangor, Kabupaten Sumedang, Jawa Barat pada ketinggian ± 752 m di atas permukaan laut (dpl). Tipe curah hujan di lokasi …

Chemical Amendments Of Dryland Saline–Sodic Soils Did Not Enhance Productivity And Soil Health In Fields Without Effective Drainage, Girma A. Birru, David E. Clay, Thomas M. Desutter, Cheryl L. Reese, Ann C. Kennedy, Sharon A. Clay, Stephanie A. Bruggeman, Rachel K. Owen, Douglas D. Malo

Agronomy, Horticulture and Plant Science Faculty Publications

A common restoration treatment for saline–sodic soils involves improving soil drainage, applying soil amendments (e.g., CaSO₄, CaCl₂, or elemental S), and leaching with water that has a relatively low electrical conductivity. However, due to high subsoil bulk densities and low drainable porosities, these treatments many not be effective in glaciated dryland systems. A 3-yr field study conducted in three model systems determined the impact of chemical amendments (none, CaCl₂, CaSO₄, and elemental S) on plant growth, microbial composition, temporal changes in electrical conductivity (EC_e ), and the relative sodium content (%Na). …

Genome-Wide Association Studies In Maize And Sorghum, Preston Hurst

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Genome-wide association studies are used to identify genetic variants associated with a particular phenotype. GWAS has been used in a variety of taxa, from humans, to fish to plants . The present analysis is focused on two species important to the human species: maize and sorghum. A GWAS in maize was carried out on the modification of the Ga1-s allele. The Ga1 locus has long been studied as being involved in a unilateral crossing barrier . However, it has long been suspected that the locus is modified by background genetic factors . GWAS was used to observe candidates for this …