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Life Sciences

Selected Works

2012

Articles 1 - 30 of 661

Full-Text Articles in Social and Behavioral Sciences

Ict For Poverty Alleviation In Pacific Island Nations: Study Of Icts4d In Fiji, Deogratias Harorimana, Opeti Rokotuinivono, Emali Sewale, Fane Salaiwai, Marica Naulu, Evangelin Roy Dec 2012

Ict For Poverty Alleviation In Pacific Island Nations: Study Of Icts4d In Fiji, Deogratias Harorimana, Opeti Rokotuinivono, Emali Sewale, Fane Salaiwai, Marica Naulu, Evangelin Roy

Dr Deogratias Harorimana

ICT for Poverty Alleviation in Pacific Island Nations: Study of ICTs4D in Fiji There has been a vague and little knowledge on the role or potential of Information and Communications Technologies (ICTs) in relation to addressing poverty in Fiji. This may be probably due to the newness of the technology in the South Pacific Region as a whole but also probably due to the fact that only 9.7% of the current Fiji 931,000 populations are internet users (ITC Figures 2011). This paper reports on finding how ICTs is contributing towards poverty alleviation in Fiji. On the basis of reviewed best …

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Combining Mbr And Nf/Ro Membrane Filtration For The Removal Of Trace Organics In Indirect Potable Water Reuse Applications, William Price, Nichanan Tadkaew, Long Nghiem, Stuart Khan, Abdulhakeem Alturki, James Mcdonald Dec 2012

Combining Mbr And Nf/Ro Membrane Filtration For The Removal Of Trace Organics In Indirect Potable Water Reuse Applications, William Price, Nichanan Tadkaew, Long Nghiem, Stuart Khan, Abdulhakeem Alturki, James Mcdonald

Long D Nghiem

The aim of this study was to demonstrate the complementarities of combining membrane bioreactor (MBR) treatment with nanofiltration (NF) or reverse osmosis (RO) membrane filtration for the removal of trace organic contaminants for potential indirect potable water recycling applications. Four commercially available NF/RO membranes, namely NF270, NF90, BW30 and ESPA2, were selected for this investigation. Challenge tests were conducted with 40 trace organic compounds at concentrations of approximately 2 ng/L in initial wastewater solutions using a laboratory scaleMBRsystem and a cross-flow NF/RO rig. The results suggest that the MBR system effectively removes hydrophobic and biodegradable trace organic compounds. The adsorption …

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Detecting Structure In Glass Patterns: An Interocular Transfer Study, Dawn Vreven, Jarrod Berge Dec 2012

Detecting Structure In Glass Patterns: An Interocular Transfer Study, Dawn Vreven, Jarrod Berge

Dawn L Vreven

Glass patterns are visual stimuli used here to study how local orientation signals are spatially integrated into global pattern perception. We measured a form aftereffect from adaptation to both static and dynamic Glass patterns and calculated the amount of interocular transfer to determine the binocularity of the detectors responsible for the perception of global structure. Both static and dynamic adaptation produced significant form aftereffects and showed a very high degree of interocular transfer, suggesting that Glass-pattern perception involves cortical processing beyond primary visual cortex. Surprisingly, dynamic adaptation produced significantly greater interocular transfer than static adaptation. Our results suggest a functional …

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Predicting Avian Distributions To Evaluate Spatiotemporal Overlap With Locust Control Operations In Eastern Australia, Judit K. Szabo, Pamela J. Davy, Michael Hooper, Lee Astheimer Dec 2012

Predicting Avian Distributions To Evaluate Spatiotemporal Overlap With Locust Control Operations In Eastern Australia, Judit K. Szabo, Pamela J. Davy, Michael Hooper, Lee Astheimer

Dr Pamela Davy

Locusts and grasshoppers cause considerable economic damage to agriculture worldwide. The Australian Plague Locust Commission uses multiple pesticides to control locusts in eastern Australia. Avian exposure to agricultural pesticides is of conservation concern, especially in the case of rare and threatened species. The aim of this study was to evaluate the probability of pesticide exposure of native avian species during operational locust control based on knowledge of species occurrence in areas and times of application. Using presence-absence data provided by the Birds Australia Atlas for 1998 to 2002, we developed a series of generalized linear models to predict avian occurrences …

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A New Phase Unwrapping Algorithm Based On Three Wavelength Phase Shift Profilometry Method, Limei Song, Xiaoxiao Dong, Jiangtao Xi, Yanguang Yu, Chaokui Yang Dec 2012

A New Phase Unwrapping Algorithm Based On Three Wavelength Phase Shift Profilometry Method, Limei Song, Xiaoxiao Dong, Jiangtao Xi, Yanguang Yu, Chaokui Yang

Dr Yanguang Yu

Phase Shift Profilometry (PSP) method is widely used in 3D shape measurement. The advantage of the PSP method is that it is less sensitive to the surface reflectivity variations and the object can be measured point by point. But if only a single wavelength λ1 is used, the step height cannot be larger than λ1/4. In order to measure step height object, Gray Code (GC) and Multi-Wavelength Phase Shift Profilometry (MWPSP) method are used. But the GC method cannot solve the problem of the objects with a variety of colors under different illumination. The shortcoming of MWPSP …

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Geant4 Physics Processes For Microdosimetry Simulation: Design Foundation And Implementation Of The First Set Of Models, S. Chauvie, Z. Francis, S. Guatelli, S. Incerti, B. Mascialino, P. Moretto, P. Nieminen, Maria Pia Dec 2012

Geant4 Physics Processes For Microdosimetry Simulation: Design Foundation And Implementation Of The First Set Of Models, S. Chauvie, Z. Francis, S. Guatelli, S. Incerti, B. Mascialino, P. Moretto, P. Nieminen, Maria Pia

Susanna Guatelli

New physical processes specific for microdosimetry simulation are under development in the Geant4 Low Energy Electromagnetic package. The first set of models implemented for this purpose cover the interactions of electrons, protons and light ions in liquid water; they address a physics domain relevant to the simulation of radiation effects in biological systems, where water represents an important component. The design developed for effectively handling particle interactions down to a low energy scale and the physics models implemented in the first public release of the software are described.

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Becoming Differently Modern: Geographic Contributions To A Generative Climate Politics, Lesley M. Head, Christopher R. Gibson Dec 2012

Becoming Differently Modern: Geographic Contributions To A Generative Climate Politics, Lesley M. Head, Christopher R. Gibson

Chris Gibson

Anthropogenic climate change is a quintessentially modern problem in its historical origins and discursive framing, but how well does modernist thinking provide us with the tools to solve the problems it created? On one hand even though anthropogenic climate change is argued to be a problem of human origins, solutions to which will require human actions and engagements, modernity separates people from climate change in a number of ways. On the other, while amodern or more-than-human concepts of multiple and relational agency are more consistent with the empirical evidence of humans being deeply embedded in earth surface processes, these approaches …

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Engaging Creative Communities In An Industrial City Setting, Chris Gibson, Ben Gallan, Andrew Warren Dec 2012

Engaging Creative Communities In An Industrial City Setting, Chris Gibson, Ben Gallan, Andrew Warren

Chris Gibson

Much has been said about how ‘creativity’ might infuse policymaking and planning – especially in the wake of popular bestsellers by Richard Florida and Charles Landry on ‘creative places’ and the ‘creative class’ (the latter a supposed demographic group associated with creative industries such as film, design and music, who are said to be the key to the economic fortunes of cities). Creativity, it is said, can be facilitated in particular urban environments, given the right preconditions such as ‘hip’ inner-city precincts, café culture and walkable dense clusters of design firms and retail and residential spaces. The common argument is …

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Living Together But Apart: Material Geographies Of Everyday Sustainability In Extended Family Households, Natascha Klocker, Chris Gibson, Erin Borger Dec 2012

Living Together But Apart: Material Geographies Of Everyday Sustainability In Extended Family Households, Natascha Klocker, Chris Gibson, Erin Borger

Chris Gibson

In the Industrialized West, ageing populations and cultural diversity-combined with rising property prices and extensive years spent in education-have been recognized as diverse factors driving increases in extended family living. At the same time, there is growing awareness that household size is inversely related to per capita resource consumption patterns, and that urgent problems of environmental sustainability are negotiated, on a day-to-day basis (and often unconsciously), at the household level. This paper explores the sustainability implications of everyday decisions to fashion, consume, and share resources around the home, through the lens of extended family households. Through interviews with extended family …

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Trial By Fire: Natural Hazards, Mixed-Methods And Cultural Research, Christine Eriksen, Nicholas J. Gill, Ross A. Bradstock Dec 2012

Trial By Fire: Natural Hazards, Mixed-Methods And Cultural Research, Christine Eriksen, Nicholas J. Gill, Ross A. Bradstock

Christine Eriksen

This paper considers the issues of research 'relevance' and 'use' to reflect upon a cultural geography research project on bushfire that did not begin with any specific aim of being useful to policy makers but which has garnered considerable and ongoing interest from a broad audience. It provides an example of how the integration of quantitative and qualitative research methods and data can enhance research into cultural aspects of natural hazards whilst simultaneously playing a key role in ensuring that the research results are of interest to a wide range of groups. Using a mixed-methods research approach was found to …

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The Art Of Learning: Wildfire, Amenity Migration And Local Environmental Knowledge, Christine Eriksen, T Prior Dec 2012

The Art Of Learning: Wildfire, Amenity Migration And Local Environmental Knowledge, Christine Eriksen, T Prior

Christine Eriksen

Communicating the need to prepare well in advance of the wildfire season is a strategic priority for wildfire management agencies worldwide. However, there is considerable evidence to suggest that although these agencies invest significant effort towards this objective in the lead up to each wildfire season, landholders in at-risk locations often remain under-prepared. One reason for the poor translation of risk information materials into actual preparation may be attributed to the diversity of people now inhabiting wildfire-prone locations in peri-urban landscapes. These people hold widely varying experiences, beliefs, attitudes and values relating to wildfire, which influence their understanding and interpretation …

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The Two-Faced Nature Of Small Heat Shock Proteins: Amyloid Assembly And The Inhibition Of Fibril Formation. Relevance To Disease States, Heath W. Ecroyd, S Meehan, John A. Carver Dec 2012

The Two-Faced Nature Of Small Heat Shock Proteins: Amyloid Assembly And The Inhibition Of Fibril Formation. Relevance To Disease States, Heath W. Ecroyd, S Meehan, John A. Carver

Heath Ecroyd

The ability of small heat-shock proteins (sHsps) such as alphaB-crystallin to inhibit the amorphous (disordered) aggregation of varied target proteins in a chaperone-like manner has been well described. The mechanistic details of this action are not understood. Amyloid fibril formation is an alternative off-folding pathway that leads to highly ordered beta-sheet-containing aggregates. Amyloid fibril formation is associated with a broad range of protein conformational diseases such as Alzhiemer's, Parkinson's and Huntington's and sHsp expression is elevated in the protein deposits that are characteristic of these disease states. The ability of sHsps to prevent fibril formation has been less well characterised. …

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Molecular Dynamics Analysis Of Apolipoprotein-D - Lipid Hydroperoxide Interactions: Mechanism For Selective Oxidation Of Met-93, Aaron J. Oakley, Surabhi Bhatia, Heath Ecroyd, Brett Garner Dec 2012

Molecular Dynamics Analysis Of Apolipoprotein-D - Lipid Hydroperoxide Interactions: Mechanism For Selective Oxidation Of Met-93, Aaron J. Oakley, Surabhi Bhatia, Heath Ecroyd, Brett Garner

Heath Ecroyd

Background: Recent studies suggest reduction of radical-propagating fatty acid hydroperoxides to inert hydroxides by interaction with apolipoprotein-D (apoD) Met93 may represent an antioxidant function for apoD. The nature and structural consequences of this selective interaction are unknown. Methodology/Principal Findings: Herein we used molecular dynamics (MD) analysis to address these issues. Longtimescale simulations of apoD suggest lipid molecules are bound flexibly, with the molecules free to explore multiple conformations in a binding site at the entrance to the classical lipocalin ligand-binding pocket. Models of 5s- 12s- and 15s hydroperoxyeicosatetraenoic acids were created and the lipids found to wrap around Met93 thus …

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Monotremes Provide A Key To Understanding The Evolutionary Significance Of Epididymal Sperm Maturation, Brett Nixon, Russell Jones, Jean-Louis Dacheux, Heath Ecroyd Dec 2012

Monotremes Provide A Key To Understanding The Evolutionary Significance Of Epididymal Sperm Maturation, Brett Nixon, Russell Jones, Jean-Louis Dacheux, Heath Ecroyd

Heath Ecroyd

"It has been widely accepted that mammalian spermatozoa are infertile when they leave the testes and require a period of maturation in both the epididymis and the female reproductive tract before acquiring the ability to fertilize an oocyte. However, the necessity for such a complex process of posttesticular sperm maturation appears to be unique to mammals because it is well established that these processes do not directly influence the fertilizing ability of the spermatozoa of birds, reptiles, and other lower vertebrates. Because of their key evolutionary position and form of reproduction, we contend that monotremes (platypus and echidna) provide a …

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Binding Of The Molecular Chaperone Alphab-Crystallin To Abeta Amyloid Fibrils Inhibits Fibril Elongation, Sarah L. Shammas, Christopher A. Waudby, Shuyu Wang, Alexander K. Buell, Tuomas P. Knowles, Heath W. Ecroyd, Mark E. Welland, John A. Carver, Christopher M. Dobson, Sarah Meehan Dec 2012

Binding Of The Molecular Chaperone Alphab-Crystallin To Abeta Amyloid Fibrils Inhibits Fibril Elongation, Sarah L. Shammas, Christopher A. Waudby, Shuyu Wang, Alexander K. Buell, Tuomas P. Knowles, Heath W. Ecroyd, Mark E. Welland, John A. Carver, Christopher M. Dobson, Sarah Meehan

Heath Ecroyd

The molecular chaperone αB-crystallin is a small heat-shock protein that is upregulated in response to a multitude of stress stimuli, and is found colocalized with Aβ amyloid fibrils in the extracellular plaques that are characteristic of Alzheimer's disease. We investigated whether this archetypical small heat-shock protein has the ability to interact with Aβ fibrils in vitro. We find that αB-crystallin binds to wild-type Aβ42 fibrils with micromolar affinity, and also binds to fibrils formed from the E22G Arctic mutation of Aβ42. Immunoelectron microscopy confirms that binding occurs along the entire length and ends of the fibrils. Investigations into the effect …

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Nmr Spectroscopy Of 14-3-3zeta Reveals A Flexible C-Terminal Extension: Differentiation Of The Chaperone And Phosphoserine-Binding Activities Of 14-3-3zeta, H Fu, Danielle Williams, Heath Ecroyd, John Carver, Lixin Zhang, Huanqin Dai, Joanna Woodcock, K Goodwin Dec 2012

Nmr Spectroscopy Of 14-3-3zeta Reveals A Flexible C-Terminal Extension: Differentiation Of The Chaperone And Phosphoserine-Binding Activities Of 14-3-3zeta, H Fu, Danielle Williams, Heath Ecroyd, John Carver, Lixin Zhang, Huanqin Dai, Joanna Woodcock, K Goodwin

Heath Ecroyd

Intracellular 14-3-3 proteins bind to many proteins, via a specific phosphoserine motif, regulating diverse cellular tasks including cell signalling and disease progression. The 14-3-3 isoform is a molecular chaperone, preventing the stressinduced aggregation of target proteins in a manner comparable with that of the unrelated sHsps (small heat-shock proteins). 1H-NMR spectroscopy revealed the presence of a flexible and unstructured C-terminal extension, 12 amino acids in length, which protrudes from the domain core of 14-3-3 and is similar in structure and length to the C-terminal extension of mammalian sHsps. The extension stabilizes 14-3-3, but has no direct role in chaperone action. …

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Enhanced Molecular Chaperone Activity Of The Small Heat-Shock Protein Alphab-Cystallin Following Covalent Immobilization Onto A Solid-Phase Support, V Bellotti, Heath Ecroyd, J Carver, H J Griesser, B Thierry, J G Shapter, S S Griesser, S Giorgetti, M R Nussio, J A Gerrard, J Garvey Dec 2012

Enhanced Molecular Chaperone Activity Of The Small Heat-Shock Protein Alphab-Cystallin Following Covalent Immobilization Onto A Solid-Phase Support, V Bellotti, Heath Ecroyd, J Carver, H J Griesser, B Thierry, J G Shapter, S S Griesser, S Giorgetti, M R Nussio, J A Gerrard, J Garvey

Heath Ecroyd

The well-characterized small heat-shock protein, alphaB-crystallin, acts as a molecular chaperone by interacting with unfolding proteins to prevent their aggregation and precipitation. Structural perturbation (e.g., partial unfolding) enhances the in vitro chaperone activity of alphaB-crystallin. Proteins often undergo structural perturbations at the surface of a synthetic material, which may alter their biological activity. This study investigated the activity of alphaB-crystallin when covalently bound to a support surface; alphaB-crystallin was immobilized onto a range of solid material surfaces, and its characteristics and chaperone activity were assessed. Immobilization was achieved via a plasma-deposited thin polymeric interlayer containing aldehyde surface groups and reductive …

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Nutrition Status Of Primary Care Patients With Depression And Anxiety, Adrienne K. Forsyth, Peter G. Williams, Frank P. Deane Dec 2012

Nutrition Status Of Primary Care Patients With Depression And Anxiety, Adrienne K. Forsyth, Peter G. Williams, Frank P. Deane

Frank Deane

The objective of this study was to evaluate the nutrition status of people referred to a nutrition and physical activity program for the management of mental health in a general practice.

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Predicting Dropout In The First 3 Months Of 12-Step Residential Drug And Alcohol Treatment In An Australian Sample, Frank P. Deane, David J. Wootton, Ching-I Hsu, Peter J. Kelly Dec 2012

Predicting Dropout In The First 3 Months Of 12-Step Residential Drug And Alcohol Treatment In An Australian Sample, Frank P. Deane, David J. Wootton, Ching-I Hsu, Peter J. Kelly

Frank Deane

Objective: Premature termination from treatment is a major factor associated with poorer drug and alcohol treatment outcomes. The present study investigated client-related baseline predictors of dropout at 3 months from a faith-based 12-step residential drug treatment program. Method: Data were collected over a period of 14 months from eight residential drug and alcohol treatment programs run by The Australian Salvation Army. The final sample consisted of 618 participants, including 524 men (84.8%) and 94 women (15.2%). Predictor variables of interest were age, gender, primary drug of concern, criminal involvement, psychological distress, drug cravings, self-efficacy to abstain, spirituality, forgiveness of self …

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Prevalence Of Smoking And Other Health Risk Factors In People Attending Residential Substance Abuse Treatment, Peter J. Kelly, Amanda L. Baker, Frank P. Deane, Frances Kay-Lambkin, Billie Bonevski, Jenna Tregarthen Dec 2012

Prevalence Of Smoking And Other Health Risk Factors In People Attending Residential Substance Abuse Treatment, Peter J. Kelly, Amanda L. Baker, Frank P. Deane, Frances Kay-Lambkin, Billie Bonevski, Jenna Tregarthen

Frank Deane

Introduction and Aims. People attending substance abuse treatment have an elevated risk of developing cardiovascular disease (CVD) and cancer. Consequently, there have been increasing calls for substance abuse treatment services to address smoking.The current study examined smoking behaviours of people attending residential substance abuse treatment. Additionally, the study examined rates of other potentially modifiable health risk factors for the development of CVD and cancer. Design and Methods. A cross-sectional survey was completed by participants attending Australian Salvation Army residential substance abuse treatment services (n = 228). Rates of smoking, exercise, dietary fat intake, body mass index and depression were identified …

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A Comparison Of Treatment Outcomes For Individuals With Substance Use Disorder Alone And Individuals With Probable Dual Diagnosis, Elizabeth K. Cridland, Frank P. Deane, Ching-I Hsu, Peter J. Kelly Dec 2012

A Comparison Of Treatment Outcomes For Individuals With Substance Use Disorder Alone And Individuals With Probable Dual Diagnosis, Elizabeth K. Cridland, Frank P. Deane, Ching-I Hsu, Peter J. Kelly

Frank Deane

The co-occurrence of substance use and mental health problems, often referred to as dual diagnosis (DD), is increasingly recognised as commonplace within substance abuse treatment programs. Two-hundred and thirty-four individuals from 9 Australian Salvation Army drug and alcohol rehabilitation programs completed a 3-month post-discharge telephone follow-up. Using a cut-off score from the Psychiatric Subscale of the Addiction Severity Index (5th ed.), 66.7% were classified as likely to have DD and 33.3% as substance use disorder only (SUD). Both groups reported comparable and decreased substance use levels at follow-up, yet DD individuals perceived less improvement in substance use problems. Comparable improvements …

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Updating The Dietadvice Website With New Australian Food Composition Data, Yasmine Probst, Holley-Anne Jones, Shannon Lin, S. Burden, David G. Steel, Linda C. Tapsell Dec 2012

Updating The Dietadvice Website With New Australian Food Composition Data, Yasmine Probst, Holley-Anne Jones, Shannon Lin, S. Burden, David G. Steel, Linda C. Tapsell

Professor David Steel

DietAdvice is an Australian self-administered dietary assessment website initially developed in 2003- 2005. The website allows patients to enter their dietary information and dieticians to remotely access and interpret the data. DietAdvice is presently being updated with new Australian food composition data. This study aims to describe the update process for moving from 1995 to 2006 food composition data. The database for the website was developed using grouped food data from the NUTTAB 1995 database. All food groups were cross-matched with the food from the NUTTAB 2006 database using the food ID codes. Rules were applied to determine the suitability …

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The Impact Of Complex Survey Design On Prevalence Estimates Of Intakes Of Food Groups In The Australian National Children's Nutrition And Physical Activity Survey, Sandy Burden, Yasmine Probst, David G. Steel, Linda C. Tapsell Dec 2012

The Impact Of Complex Survey Design On Prevalence Estimates Of Intakes Of Food Groups In The Australian National Children's Nutrition And Physical Activity Survey, Sandy Burden, Yasmine Probst, David G. Steel, Linda C. Tapsell

Professor David Steel

No abstract provided.

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Video-Recorded Usability Testing Of A Web-Based Self-Administered Dietary Assessment, Yasmine Probst, David Steel, Linda Tapsell Dec 2012

Video-Recorded Usability Testing Of A Web-Based Self-Administered Dietary Assessment, Yasmine Probst, David Steel, Linda Tapsell

Professor David Steel

No abstract provided.

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An Indoor Localisation And Motion Monitoring System To Determine Behavioural Activity In Dementia Afflicted Patients In Aged Care, Matthew D'Souza, Montserrat Ros, Mohanraj Karunanithi Dec 2012

An Indoor Localisation And Motion Monitoring System To Determine Behavioural Activity In Dementia Afflicted Patients In Aged Care, Matthew D'Souza, Montserrat Ros, Mohanraj Karunanithi

Dr Montserrat Ros

Dementia is highly prevalent among the older population. Most patients with dementia are admitted to an aged care facility due to wandering behaviour which tends to result in dangerous scenarios such as straying away from the facility and being seriously injured. Due to the decreasing availability of carers in aged care, there is a need to prioritise monitoring of patients that have a severe case of wondering. The challenge is to allow carers to monitor the status of such patients in terms of position localisation and motion behavioural status, in real-time. The long term behavioural analysis of such patients would …

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The Funding Structure Of The Norwegian Sport And Physical Activity System, Bryn Jones, Winston Wing Hong To, Darwin Semotiuk Nov 2012

The Funding Structure Of The Norwegian Sport And Physical Activity System, Bryn Jones, Winston Wing Hong To, Darwin Semotiuk

Winston Wing Hong To

Norway is a country that has simultaneously developed a successful high performance and elite sport (HPS) program, as well as a physical activity program designed for all of its citizens. Limited resources make it challenging for most countries to balance a “sport for all” and “high performance or elite sport development” policy. Norway is generally held to be one of few countries in the world that has been able to achieve such a balance despite having a small population (4.5 million) and having limited financial resources (1.5 Billion Norwegian Krone (kr)) (Semotiuk, 2009). Though Norwegian sport policy is highly regarded …

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Exposing A Lack Of Communication Regarding Sport Policy: An Analysis Of The Canadian Talent Identification Process, Geoff Schoenberg, Winston Wing Hong To, David Legg Nov 2012

Exposing A Lack Of Communication Regarding Sport Policy: An Analysis Of The Canadian Talent Identification Process, Geoff Schoenberg, Winston Wing Hong To, David Legg

Winston Wing Hong To

The Sports Policy Factors Leading to International Sporting Success (SPLISS), a comparative high performance and elite sport (HPS) model, has identified nine distinct pillars that contribute to the success of a country’s HPS system. The study was originally conducted in 2003 with seven nations from Europe and North America. Beginning in 2009, the study was repeated and expanded to include 17 nations from North America, South America, Europe, Asia, and Oceania. While the SPLISS study was designed to examine and compare countries’ HPS systems, the aim of this research is to compare the intra-country results of Canadian athletes, coaches, and …

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Case Study On The Pattern Change In Arabidopsis Thaliana Intron Sequence, Ren Zhang, Rachel Caldwell, Yan-Xia Lin, Jinda Kongcharoen, Yiren Yang Nov 2012

Case Study On The Pattern Change In Arabidopsis Thaliana Intron Sequence, Ren Zhang, Rachel Caldwell, Yan-Xia Lin, Jinda Kongcharoen, Yiren Yang

Associate Professor Yan-Xia Lin

A large portion in eukaryotic genomes is introns but their function is not yet fully elucidated. The aims of this study are to employ the generalized Bernoulli modeling approach to estimate the change points based on GC distribution in intron sequences of Arabidopsis thaliana and to investigate whether there is any correlation between gene properties (the gene expression level and the protein function) and these intron pattern changes. The influence of the intron length and the number of GC on the intron sequence pattern changes is demonstrated. Among the random sampled intron sequences, 10.71% have been identified to have pattern …

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The Analysis Of Pattern Change In Intron Sequences, Jinda Kongcharoen, Yan-Xia Lin, Rachel Caldwell, Yiren Yang, Ren Zhang Nov 2012

The Analysis Of Pattern Change In Intron Sequences, Jinda Kongcharoen, Yan-Xia Lin, Rachel Caldwell, Yiren Yang, Ren Zhang

Associate Professor Yan-Xia Lin

The Generalized Bernoulli Modeling approach is used to analyze the pattern change in intron sequences of a model plant species Arabidopsis thaliana. The influence of the intron length and the number of GC on the intron sequence pattern changes is examined. Two other gene properties, the gene expression level and the protein function encoded are also assessed. Among the random sampled intron sequences,10.71% of them have been identified to have sequence pattern change. Our study shows that the number of GC and the intron length significantly influence the intron pattern change while the gene expression level and the protein function …

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Improving Promoter Prediction For The Nnpp2.2 Algorithm: A Case Study Using Escherichia Coli Dna Sequences, Ren Zhang, Alexandra Burden, Yan-Xia Lin Nov 2012

Improving Promoter Prediction For The Nnpp2.2 Algorithm: A Case Study Using Escherichia Coli Dna Sequences, Ren Zhang, Alexandra Burden, Yan-Xia Lin

Associate Professor Yan-Xia Lin

No abstract provided.

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