Physical Sciences and Mathematics Commons^™

Dataset: A Numerical Simulation Of The Ocean, Sea Ice And Ice Shelves In The Amundsen Sea (Antarctica) Over The Period 2006-2022 And Its Associated Code And Input Files, Pierre St-Laurent

Data

A three-dimensional numerical model of the Amundsen Sea (Antarctica) was used to simulate the period Jan.2006-Mar.2022 under consistent atmospheric/oceanic forcings, bathymetry/ice shelf topography, and model equations/parameters. The model is an implementation of the Regional Ocean Modeling System (ROMS, https://www.myroms.org/) with extensions for sea ice (Budgell 2005) and ice shelves (Dinniman et al. 2011). It simulates the ocean hydrography and circulation, sea ice thermodynamics and dynamics, and the basal melt of the ice shelves, with a uniform horizontal mesh of 1.5km and 20 topography-following vertical levels. Forcings include the ERA5 reanalysis (3-hourly), 10 tidal constituents from CATS 2008, and ocean/sea ice …

Loop Current Spin-Off Eddies, Slope Currents And Dispersal Of Reef Fish Larvae From The Flower Gardens National Marine Sanctuary And The Florida Middle Grounds, Donald R. Johnson, Harriet Perry, Guillermo Sanchez-Rubio, Mark A. Grace

Gulf and Caribbean Research

Large energetic spin—off eddies from Loop Current intrusions into the Gulf of Mexico play a major role in water exchange between the continental shelf and the deep basin in the northern Gulf. Reef fish larvae, spawned on the outer shelf and planktonic during their early life history, are broadly dispersed by this mechanism, but may be lost to the cohort by transport away from suitable settlement habitat. In this study, satellite altimeter data—assimilative ocean model currents (HYCOM) from 2003—2015 are used to calculate kinetic energy of the mixed layer over the upper continental slope (200 m —1000 m) due to …

Acclimation, Adaptation, Traits And Trade-Offs In Plankton Functional Type Models: Reconciling Terminology For Biology And Modelling, Kevin J. Flynn, Michael St. John, John A. Raven, David O. F. Skibinski, J. Icarus Allen, Aditee Mitra, Eileen E. Hofmann

CCPO Publications

We propose definitions in terminology to enhance ongoing collaborations between biologists and modellers on plankton ecology. Organism "functional type" should refer to commonality in ecology not biogeochemistry; the latter is largely an emergent property of the former, while alignment with ecology is also consistent with usage in terrestrial science. Adaptation should be confined, as in genetics, to consideration of species inter-generational change; most so-called "adaptive" plankton models are thus acclimative, modifying vital rates in response to stimuli. Trait trade-off approaches should ideally only be considered for describing intra-generational interactions; in applications between generations, and certainly between unrelated species, such concepts …

The Great 2012 Arctic Ocean Summer Cyclone Enhanced Biological Productivity On The Shelves, Jinlun Zhang, Carin Ashjian, Robert Campbell, Victoria Hill, Yvette H. Spitz, Michael Steele

OES Faculty Publications

A coupled biophysical model is used to examine the impact of the great Arctic cyclone of early August 2012 on the marine planktonic ecosystem in the Pacific sector of the Arctic Ocean (PSA). Model results indicate that the cyclone influences the marine planktonic ecosystem by enhancing productivity on the shelves of the Chukchi, East Siberian, and Laptev seas during the storm. Although the cyclone's passage in the PSA lasted only a few days, the simulated biological effects on the shelves last 1 month or longer. At some locations on the shelves, primary productivity (PP) increases by up to 90% and …

Circulation And Behavior Controls On Dispersal Of Eastern Oyster (Crassostrea Virginica) Larvae In Delaware Bay, Diego A. Narvaez, John M. Klinck, Eric N. Powell, Eileen E. Hofmann, John Wilkin, Dale B. Haidvogel

CCPO Publications

The degree of genetic connectivity among populations in a metapopulation has direct consequences for species evolution, development of disease resistance, and capacity of a metapopulation to adapt to climate change. This study used a metapopulation model that integrates population dynamics, dispersal, and genetics within an individual-based model framework to examine the mechanisms and dynamics of genetic connectivity within a metapopulation. The model was parameterized to simulate four populations of oysters (Crassostrea virginica) from Delaware Bay on the mid-Atlantic coast of the United States. Differences among the four populations include a strong spatial gradient in mortality, a spatial gradient …

Analysis Of Roms Estimated Posterior Error Utilizing 4dvar Data Assimilation, Joseph Patrick Horton

Mathematics

The appropriateness of the approximate error calculated by the Regional Ocean Modeling System (ROMS) is analyzed using Four-Dimensional Data Assimilation (4DVAR) performed on a numerical model of the San Luis Obispo Bay. An effective method of sampling data to minimize the actual error associated with the assimilated numerical model is explored by using different data sampling methods. An idealized state of the SLO bay region ("Real Run") is created to be used as the real ocean, then a numerical model of this region is created approximating this Real Run; this is known as the "Simulated State". By taking samples from …

Early Season Depletion Of Dissolved Iron In The Ross Sea Polynya: Implications For Iron Dynamics On The Antarctic Continental Shelf, Peter N. Sedwick, C. M. Marsay, B. M. Sohst, A. M. Aguilar-Islas, M. C. Lohan, M. C. Long, K. R. Arrigo, R. B. Dunbar, M. A. Saito, W. O. Smith, G. R. Ditullio

OES Faculty Publications

The Ross Sea polynya is among the most productive regions in the Southern Ocean and may constitute a significant oceanic CO₂sink. Based on results from several field studies, this region has been considered seasonally iron limited, whereby a "winter reserve" of dissolved iron (dFe) is progressively depleted during the growing season to low concentrations (~ 0.1 nM) that limit phytoplankton growth in the austral summer (December-February). Here we report new iron data for the Ross Sea polynya during austral summer 2005-2006 (27 December-22 January) and the following austral spring 2006 (16 November-3 December). The summer 2005-2006 data show …

Causes Of Tropical Atlantic Paleo-Salinity Variation During Periods Of Reduced Amoc, Xiuquan Wan, Ping Chang, Matthew W. Schmidt

OES Faculty Publications

During periods of reduced Atlantic meridional overturning circulation (AMOC) associated with a freshening of northern North Atlantic surface water, paleo proxy records indicate a corresponding surface salinity increase over the entire tropical Atlantic. Although latitudinal-shifts in the mean position of the Atlantic Intertropical Convergence Zone (ITCZ) can explain certain features of the paleo salinity reconstructions, this mechanism does not offer an explanation for the reconstructed basin-wide paleo-salinity response to AMOC change. Here, we present new results from general circulation model simulations that suggest the sea surface salinity (SSS) increase in the tropical north Atlantic during periods of weakened AMOC is …

A Comparison Of Global Estimates Of Marine Primary Production From Ocean Color, Mary-Elena Carr, Marjorie A. M. Friedrichs, Marjorie Schmeltz, Maki Noguchi Aita, David Antoine, Kevin R. Arrigo, Ichio Asanuma, Oliver Aumont, Richard Barber, Michael Behrenfeld

CCPO Publications

The third primary production algorithm round robin (PPARR3) compares output from 24 models that estimate depth-integrated primary production from satellite measurements of ocean color, as well as seven general circulation models (GCMs) coupled with ecosystem or biogeochemical models. Here we compare the global primary production fields corresponding to eight months of 1998 and 1999 as estimated from common input fields of photosynthetically-available radiation (PAR), sea-surface temperature (SST), mixed-layer depth, and chlorophyll concentration. We also quantify the sensitivity of the ocean-color-based models to perturbations in their input variables. The pair-wise correlation between ocean-color models was used to cluster them into groups …

Estimate Of Bottom And Surface Stress During A Spring-Neap Tide Cycle By Dynamical Assimilation Of Tide Gauge Observatons In The Chesapeake Bay, Y. H. Spitz, J. M. Klinck

CCPO Publications

Dynamical assimilation of surface elevation from tide gauges is investigated to estimate the bottom drag coefficient and surface stress as a first step in improving modeled tidal and wind-driven circulation in the Chesapeake Bay. A two-dimensional shallow water model and an adjoint variational method with a limited memory quasi-Newton optimization algorithm are used to achieve this goal. Assimilation of tide gauge observations from 10 permanent stations in the Bay and use of a two-dimensional model adequately estimate the bottom drag coefficient, wind stress, and surface elevation at the Bay mouth. Subsequent use of these estimates in the circulation model considerably …

Modeling Environmental Effects On Msx Prevalence And Intensity In Eastern Oyster (Crassostrea Virginica) Populations, Michelle Christine Paraso

OES Theses and Dissertations

An oyster population model coupled with a model for Haplosporidium nelsoni, the causative agent of the oyster disease MSX, was used with salinity time-series constructed from Delaware River flow measurements to study environmentally-induced variations in the annual cycle of this disease. Simulations with this model were designed to investigate the effect of increased or decreased spring freshwater discharge, the timing of high freshwater runoff, the presence or absence of a fall or late spring phytoplankton bloom, and the occurrence of a warm winter on MSX prevalence and intensity in Delaware Bay oyster populations. Model simulations for the lower Bay site …

Studies Of Warm-Core Rings Using A Particle-In-Cell Method, John James Holdzkom Ii

OES Theses and Dissertations

A particle-in-cell (PIC) model is developed and applied to problems involving the evolution of warm-core rings. Such models are a hybrid of conventional Eulerian and Lagrangian models. They are ideally suited for problems in which a lower layer outcrops to the surface, such as at the boundary of a ring.

The model is developed in three implementations. First, for purposes of model validation, a reduced gravity model is described. The PIC model reproduces the essential characteristics of analytical solutions to the reduced gravity equations and integral invariants are conserved to a high degree. Next, a 1.5-layer model is developed and …

On The Interpentadal Variability Of The North Atlantic Ocean: Model Simulated Changes In Transport, Meridional Heat Flux And Coastal Sea Level Between 1955-1959 And 1970-1974, Tal Ezer, George L. Mellor, Richard J. Greatbatch

CCPO Publications

Previous studies by Greatbatch et al. (1991) indicate significant changes in the North Atlantic thermohaline structure and circulation between the pentads 1955–1959 and 1970–1974, using data analyzed by Levitus (1989a,b,c) and a simple diagnostic model by Mellor et al. (1982). In this paper these changes are modeled using a three-dimensional, free surface, coastal ocean model. Diagnostic and short-term prognostic calculations are used to infer the dynamically adjusted fields corresponding to the observed hydrographic and wind stress climatology of each pentad. While the results agree with earlier studies indicating that the Gulf Stream was considerably weaker (by about 30 Sv) during …

The Evolution Of Density-Driven Circulation Over Sloping Bottom Topography, G. H. Wheless, J. M. Klinck

CCPO Publications

The short timescale temporal evolution of buoyancy-driven coastal flow over sloping bottom topography is examined using a two-dimensional, vertically averaged numerical model. Winter shelf circulation driven by a coastal ''point source'' buoyancy flux is modeled by initiating a coastal outflow with density anomaly epsilon into well-mixed shelf water. The nonlinear interaction between the time-varying velocity and density field is represented by an advection-diffusion equation. Three cases are discussed: that of a buoyant (epsilon < 0) outflow, a neutral (epsilon = 0) outflow, and a dense (epsilon > 0) outflow. Results are similar to observations from well-mixed shelf areas and show that density-topography interactions are capable of substantially influencing coastal circulation. A negative (buoyant) coastal …

A Model Of The Population Dynamics Of The Blue Crab In Chesapeake Bay, Betty Springer Hester

OES Theses and Dissertations

This study has particular application to the blue crab fisheries in Chesapeake Bay, an economically important industry whose successful management has been hindered by relatively poor understanding of the population dynamics. Recent biological studies have indicated a systematic spawning behavior which seems designed for ejection of larvae seaward from the bay entrance where they spend their pre-metamorphosis stages in the neuston. A physical mechanism for retention of the larvae in sufficient proximity to the bay entrance for their return at the proper time which involves the action of wind stress in shallow waters is proposed. Since the supply of blue …

Numerical Model Simulation Of Offshore Flow During The Winter Season, Maria Cintia Piccolo

OES Theses and Dissertations

Because of the step function variability of heat and moisture flux in coastal zones, adequate descriptive models of mesoscale coastal circulation and weather patterns demand high spatial resolution in the analysis of wind, temperature and moisture patterns. To obtain realistic concepts of offshore flow the sparse offshore data networks need to be supplemented by mesoscale numerical models. The problems associated with the modeling of offshore flow across the east coast of the United States during the winter season have been investigated with a simple two dimensional numerical model of the planetary boundary layer.

The model has two predictive equations for …