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Full-Text Articles in Physical Sciences and Mathematics

Technology Enhanced Learning: Students' Views, Eileen O'Donnell, Mary Sharp Dec 2011

Technology Enhanced Learning: Students' Views, Eileen O'Donnell, Mary Sharp

Eileen O'Donnell

User feedback is very important in all areas of computer science especially in the development of computer applications. Hence, student feedback on the use of technology enhanced learning in higher education in Ireland is relevant to the quality of the learning resources to be created by learning designers and academics in the future. The book “Student Reactions to Learning with Technologies: Perceptions and Outcomes” (Moyle & Wijngaards, 2012) was published by IGI Global in October 2011. This book includes contributions from various authors who are interested in students’ feedback regarding how technology has impacted on their educational experience. This book …


A Model-Driven Approach To Job/Task Composition In Cluster Computing, Yogesh Kanitkar, Konstantin Läufer, Neeraj Mehta, George K. Thiruvathukal Nov 2011

A Model-Driven Approach To Job/Task Composition In Cluster Computing, Yogesh Kanitkar, Konstantin Läufer, Neeraj Mehta, George K. Thiruvathukal

George K. Thiruvathukal

In the general area of high-performance computing, object-oriented methods have gone largely unnoticed. In contrast, the Computational Neighborhood (CN), a framework for parallel and distributed computing with a focus on cluster computing, was designed from ground up to be object-oriented. This paper describes how we have successfully used UML in the following model-driven, generative approach to job/task composition in CN. We model CN jobs using activity diagrams in any modeling tool with support for XMI, an XML-based external representation of UML models. We then export the activity diagrams and use our XSLT-based tool to transform the resulting XMI representation to …


Java At Middle Age: Enabling Java For Computational Science, George K. Thiruvathukal Nov 2011

Java At Middle Age: Enabling Java For Computational Science, George K. Thiruvathukal

George K. Thiruvathukal

Not long after the Mosaic Web browser appeared and Netscape communications formed, Sun Microsystems launched Java in a way that will be forever known as a marketing success story. All across the US, there were many Java Day events. I still have my t-shirts as proof of having been there.


A Java Graphical User Interface For Large-Scale Scientific Computations In Distributed Systems, X Shen, George K. Thiruvathukal, Wei-Keng Liao, Alok Choudhary, A Singh Nov 2011

A Java Graphical User Interface For Large-Scale Scientific Computations In Distributed Systems, X Shen, George K. Thiruvathukal, Wei-Keng Liao, Alok Choudhary, A Singh

George K. Thiruvathukal

Large-scale scientific applications present great challenges to computational scientists in terms of obtaining high performance and in managing large datasets. These applications (most of which are simulations) may employ multiple techniques and resources in a heterogeneously distributed environment. Effective working in such an environment is crucial for modern large-scale simulations. In this paper, we present an integrated Java graphical user interface (IJ-GUI) that provides a control platform for managing complex programs and their large datasets easily. As far as performance is concerned, we present and evaluate our initial implementation of two optimization schemes: data replication and data prediction. Data replication …


Wide-Area Implementation Of The Message Passing Interface, Ian Foster, Jonathan Geisler, William Gropp, Nicholas Karonis, Ewing Lusk, George K. Thiruvathukal, Steven Tuecke Nov 2011

Wide-Area Implementation Of The Message Passing Interface, Ian Foster, Jonathan Geisler, William Gropp, Nicholas Karonis, Ewing Lusk, George K. Thiruvathukal, Steven Tuecke

George K. Thiruvathukal

The Message Passing Interface (MPI) can be used as a portable, high-performance programming model for wide-area computing systems. The wide-area environment introduces challenging problems for the MPI implementor, due to the heterogeneity of both the underlying physical infrastructure and the software environment at different sites. In this article, we describe an MPI implementation that incorporates solutions to these problems. This implementation has beenconstructed by extending the Argonne MPICH implementation of MPI to use communicationservices provided by the Nexus communication library and authentication, resource allocation, process creation/management, and information services provided by the I-Soft system (initially) and the Globus metacomputing toolkit …


Combining Soa And Bpm Technologies For Cross-System Process Automation, Sebastian Herr, John Shafaee, Konstantin Läufer, George K. Thiruvathukal, Guido Wirtz Nov 2011

Combining Soa And Bpm Technologies For Cross-System Process Automation, Sebastian Herr, John Shafaee, Konstantin Läufer, George K. Thiruvathukal, Guido Wirtz

George K. Thiruvathukal

This paper summarizes the results of an industry case study that introduced a cross-system business process automation solution based on a combination of SOA and BPM standard technologies (i.e., BPMN, BPEL, WSDL). Besides discussing major weaknesses of the existing, custom-built, solution and comparing them against experiences with the developed prototype, the paper presents a course of action for transforming the current solution into the proposed solution. This includes a general approach, consisting of four distinct steps, as well as specific action items that are to be performed for every step. The discussion also covers language and tool support and challenges …


Distributed Memo: A Heterogeneously Distributed And Parallel Software Development Environment, William T. O'Connell, George K. Thiruvathukal, Thomas W. Christopher Nov 2011

Distributed Memo: A Heterogeneously Distributed And Parallel Software Development Environment, William T. O'Connell, George K. Thiruvathukal, Thomas W. Christopher

George K. Thiruvathukal

Heterogeneously distributed and parallel computing environments are highly dependent on hardware, data migration, and protocols. The result is significant difficulty in software reuse, portability across platforms, and an increased overall development effort. The appearance of a shared directory of unordered queues can be provided by integrating heterogeneous computers transparently. This integration provides a conducive environment for parallel and distributed application development, by abstracting the issues of hardware and communication. Object oriented technology is exploited to provide this seamless environment.


The Hydra Filesystem: A Distrbuted Storage Famework, Benjamin Gonzalez, George K. Thiruvathukal Nov 2011

The Hydra Filesystem: A Distrbuted Storage Famework, Benjamin Gonzalez, George K. Thiruvathukal

George K. Thiruvathukal

Hydra File System (HFS) is an experimental framework for constructing parallel and distributed filesystems. While parallel and distributed applications requiring scalable and flexible access to storage and retrieval are becoming more commonplace, parallel and distributed filesystems remain difficult to deploy easily and configure for different needs. HFS aims to be different by being true to the tradition of high-performance computing while employing modern design patterns to allow various policies to be configured on a per instance basis (e.g. storage, communication, security, and indexing schemes). We describe a working prototype (available for public download) that has been implemented in the Python …


High-Performance Java Platform Computing, Thomas W. Christopher, George K. Thiruvathukal Nov 2011

High-Performance Java Platform Computing, Thomas W. Christopher, George K. Thiruvathukal

George K. Thiruvathukal

Threading and concurrency are crucial to building high-performance Java applications -- but they have a reputation for complexity. High Performance Java Computing thoroughly demystifies these advanced development techniques. It delivers practical programming solutions, proven design patterns, and a rigorously-tested code library -- everything developers need to build optimized Java software for technical, business, and E-commerce applications. Start by understanding how threading and concurrency can be used to solve a wide variety of performance problems, enabling the construction of more powerful networked applications. Master the Java 2 Threads classes, including daemon threads, thread control, scheduling, and more. Review the key problems …


Apt Compiler Toolkit User Manual, George K. Thiruvathukal, Ufuk Verun Nov 2011

Apt Compiler Toolkit User Manual, George K. Thiruvathukal, Ufuk Verun

George K. Thiruvathukal

The Apt Compiler Toolkit was designed to address the need for structured, efficient, portable, and capable tools to prototype language translators and compilers. In the current release of the toolkit tools are available for the generation of scanners, parsers, and data structures. A robust library of functions is supplied with the toolkit which includes support for the scanner, the parser, abstract data types (which are commonly used in language translators/compilers), and string functions.


Introducing Computing Now, George K. Thiruvathukal Nov 2011

Introducing Computing Now, George K. Thiruvathukal

George K. Thiruvathukal

One of Computing Now's editorial board members talks about this IEEE Computer Society initiative and all that it has to offer members and nonmembers alike.


A Multi-Platform Application Suite For Enhancing South Asian Language Pedagogy, Tao Bai, Christopher K. Chung, Konstantin Läufer, Daisy Rockwell, George K. Thiruvathukal Nov 2011

A Multi-Platform Application Suite For Enhancing South Asian Language Pedagogy, Tao Bai, Christopher K. Chung, Konstantin Läufer, Daisy Rockwell, George K. Thiruvathukal

George K. Thiruvathukal

This interdisciplinary project explores the potential for handheld/wireless (H/W) technology in the context of language education within and beyond the classroom. Specifically, we have designed and implemented a suite of multi-platform (desktop/laptop, handheld, and browser) applications to enhance the teaching of South Asian languages such as Hindi-Urdu. Such languages are very difficult to learn, let alone write, and H/W devices (with their handwriting/drawing capabilities) can play a significant role in overcoming the learning curve. The initial application suite includes a character/word tracer, a word splitter/joiner, a smart flashcard with audio, contextual augmented stories for reading comprehension, and a poetic metronome. …


Xml In Computational Science, George K. Thiruvathukal Nov 2011

Xml In Computational Science, George K. Thiruvathukal

George K. Thiruvathukal

In this first article in a series about XML in computational science, I present some background and lightweight examples of XML usage, describe some XML component frameworksalong with their purpose and applicability to computational science, and discuss some technical obstacles to overcome for the language to be taken seriously in computational science.


Enhancing The Cs Curriculum With With Aspect-Oriented Software Development (Aosd) And Early Experience, Konstantin Läufer, George K. Thiruvathukal, Tzilla Elrad Nov 2011

Enhancing The Cs Curriculum With With Aspect-Oriented Software Development (Aosd) And Early Experience, Konstantin Läufer, George K. Thiruvathukal, Tzilla Elrad

George K. Thiruvathukal

Aspect-oriented software development (AOSD) is evolving as an important step beyond existing software development approaches such as object-oriented development. An aspect is a module that captures a crosscutting concern, behavior that cuts across different units of abstraction in a software application; expressed as a module, such behavior can be enabled and disabled transparently and non-invasively, without changing the application code itself. Increasing industry demand for expertise in AOSD gives rise to the pedagogical challenge of covering this methodology and its foundations in the computer science curriculum. We present our curricular initiative to incorporate a novel course in AOSD in the …


E-Carrel: An Environment For Collaborative Textual Scholarship, George K. Thiruvathukal, Steven E. Jones, Peter Shillingsburg Nov 2011

E-Carrel: An Environment For Collaborative Textual Scholarship, George K. Thiruvathukal, Steven E. Jones, Peter Shillingsburg

George K. Thiruvathukal

The E-Carrel project aims to address the preservation of, access to, and re-uses of humanities electronic text files. It enables dynamic, growing resource projects as repositories for new knowledge. It provides for on-line distributed data and tools that are open to new scholarly enhancement through a user friendly tagging tool, sophisticated use of stand-off markup and annotation (leveraging RDF capabilities), and a browsing system anyone can use. It creates a secure system of text preparation and dissemination that encourages collaboration and participation by anyone interested in the texts. To insure the endurance of authenticated texts, multiple copies are distributed on …


Computational Thinking...And Doing, George K. Thiruvathukal Nov 2011

Computational Thinking...And Doing, George K. Thiruvathukal

George K. Thiruvathukal

Computing in Science and Engineering, From the Editors


Scalable Approaches For Supporting Mpi-Io Atomicity, Peter Aarestad, George K. Thiruvathukal, Avery Ching, Alok Choudhary Nov 2011

Scalable Approaches For Supporting Mpi-Io Atomicity, Peter Aarestad, George K. Thiruvathukal, Avery Ching, Alok Choudhary

George K. Thiruvathukal

Scalable atomic and parallel access to noncontiguous regions of a file is essential to exploit high performance I/O as required by large-scale applications. Parallel I/O frameworks such as MPI I/O conceptually allow I/O to be defined on regions of a file using derived datatypes. Access to regions of a file can be automatically computed on a perprocessor basis using the datatype, resulting in a list of (offset, length) pairs. We describe three approaches for implementing lock serving (whole file, region locking, and byterange locking) and compare the various approaches using three noncontiguous I/O benchmarks. We present the details of the …


Technologies For Ubiquitous Supercomputing: A Java Interface To The Nexus Communication System, Ian Foster, George K. Thiruvathukal, Steven Tuecke Nov 2011

Technologies For Ubiquitous Supercomputing: A Java Interface To The Nexus Communication System, Ian Foster, George K. Thiruvathukal, Steven Tuecke

George K. Thiruvathukal

We use the term ubiquitous supercomputing to refer to systems that integrate low- and mid-range computing systems, advanced networks and remote high-end computers with the goal of enhancing the computational power accessible from local environments. Such systems promise to enable new applications in areas as diverse as smart instruments and collaborative environments. However, they also demand tools for transporting code between computers and for establishing flexible, dynamic communication structures. In this article, we propose that these requirements be satisfied by introducing Java classes that implement the global pointer and remote service request mechanisms defined by a communication library called Nexus. …


Scalable Implementations Of Mpi Atomicity For Concurrent Overlapping I/O, Wei-Keng Liao, Alok Choudhary, Kenin Coloma, George K. Thiruvathukal, Lee Ward, Eric Russell, Neil Pundit Nov 2011

Scalable Implementations Of Mpi Atomicity For Concurrent Overlapping I/O, Wei-Keng Liao, Alok Choudhary, Kenin Coloma, George K. Thiruvathukal, Lee Ward, Eric Russell, Neil Pundit

George K. Thiruvathukal

For concurrent I/O operations, atomicity defines the results in the overlapping file regions simultaneously read/written by requesting processes. Atomicity has been well studied at the file system level, such as POSIX standard. In this paper, we investigate the problems arising from the implementation of MPI atomicity for concurrent overlapping write access and provide a few programming solutions. Since the MPI definition of atomicity differs from the POSIX one, an implementation that simply relies on the POSIX file systems does not guarantee correct MPI semantics. To have a correct implementation of atomic I/O in MPI, we examine the efficiency of three …


Natural Xml For Data Binding, Processing, And Persistence, George K. Thiruvathukal, Konstantin Läufer Nov 2011

Natural Xml For Data Binding, Processing, And Persistence, George K. Thiruvathukal, Konstantin Läufer

George K. Thiruvathukal

The article explains what you need to do to incorporate XML directly into your computational science application. The exploration involves the use of a standard parser to automatically build object trees entirely from application-specific classes. This discussion very much focuses on object-oriented programming languages such as Java and Python, but it can work for non-object-oriented languages as well. The ideas in the article provide a glimpse into the Natural XML research project.


The Object Of Platform Studies: Relational Materialities And The Social Platform (The Case Of The Nintendo Wii), Steven E. Jones, George K. Thiruvathukal Nov 2011

The Object Of Platform Studies: Relational Materialities And The Social Platform (The Case Of The Nintendo Wii), Steven E. Jones, George K. Thiruvathukal

George K. Thiruvathukal

Racing the Beam: The Atari Video Computer System,by Ian Bogost and Nick Montfort, inaugurated thePlatform Studies series at MIT Press in 2009.We’ve coauthored a new book in the series, Codename: Revolution: the Nintendo Wii Video Game Console. Platform studies is a quintessentially Digital Humanities approach, since it’s explicitly focused on the interrelationship of computing and cultural expression. According to the series preface, the goal of platform studies is “to consider the lowest level of computing systems and to understand how these systems relate to culture and creativity.”In practice, this involves paying close attentionto specific hardware and software interactions--to the vertical …


The Extreme Software Development Series: An Open Curricular Framework For Applied Capstone Courses, Konstantin Läufer, George K. Thiruvathukal Nov 2011

The Extreme Software Development Series: An Open Curricular Framework For Applied Capstone Courses, Konstantin Läufer, George K. Thiruvathukal

George K. Thiruvathukal

We describe an open, flexible curricular framework for offering a collection of advanced undergraduate and graduate courses in software development. The courses offered within this framework are further unified by combining solid foundations with current technology and play the role of capstone courses in a modern software development track. Our initiative has been very successful with all stakeholders involved.


Restfs: Resources And Services Are Filesystems, Too, Joseph P. Kaylor, Konstantin Läufer, George K. Thiruvathukal Nov 2011

Restfs: Resources And Services Are Filesystems, Too, Joseph P. Kaylor, Konstantin Läufer, George K. Thiruvathukal

George K. Thiruvathukal

We have designed and implemented RestFS, a software frame-work that provides a uniform, configurable connector layerfor mapping remote web-based resources to local filesystem-based resources, recognizing the similarity between thesetwo types of resources. Such mappings enable programmaticaccess to a resource, as well as composition of two or moreresources, through the local operating system’s standardfilesystem application programming interface (API), script-able file-based command-line utilities, and inter-process com-munication (IPC) mechanisms. The framework supports au-tomatic and manual authentication. We include several ex-amples intended to show the utility and practicality of ourframework.


Naked Object File System (Nofs): A Framework To Expose An Object-Oriented Domain Model As A File System, Joseph P. Kaylor, Konstantin Läufer, George K. Thiruvathukal Nov 2011

Naked Object File System (Nofs): A Framework To Expose An Object-Oriented Domain Model As A File System, Joseph P. Kaylor, Konstantin Läufer, George K. Thiruvathukal

George K. Thiruvathukal

We present Naked Objects File System (NOFS), a novel framework that allows a developer to expose a domain model as a file system by leveraging the Naked Objects design principle. NOFS allows a developer to construct a file system without having to understand or implement all details related to normal file systems development. In this paper we explore file systems frameworks and object-oriented frameworks in a historical context and present an example domain model using the framework. This paper is based on a fully-functional implementation that is distributed as free/open source software, including virtual machine images to demonstrate and study …


Utilization Of E-Learning Tools, Virtual Machines, & Open Source Software To Enhance Graduate Systems Engineering Programs, Maurice Dawson, Darrell Burrell, William Emanuel Dec 2010

Utilization Of E-Learning Tools, Virtual Machines, & Open Source Software To Enhance Graduate Systems Engineering Programs, Maurice Dawson, Darrell Burrell, William Emanuel

Maurice Dawson

This paper is a report on the findings of a study conducted on a graduate systems engineering course at an urban university in a group learning environment. The course, IEGR 501 Introduction to Advanced Systems Engineering, was a sixteen week course which took students with backgrounds in Industrial Engineering, Electrical Engineering, and Mechanical Engineering and prepared them to understand the systems engineering subject matter more. As the future of education becomes more and more virtual it becomes essential that universities take full advantage of the available tools at their disposal.


Understanding The Need And Importance Of The Cloud Computing Environment Within The National Institute Of Food And Agriculture, An Agency Of The United States Department Of Agriculture, Festus Onyegbula, Maurice Dawson, Jeffrey Stevens Dec 2010

Understanding The Need And Importance Of The Cloud Computing Environment Within The National Institute Of Food And Agriculture, An Agency Of The United States Department Of Agriculture, Festus Onyegbula, Maurice Dawson, Jeffrey Stevens

Maurice Dawson

Aligning information systems to corporate goals has emerged as a leading concern over the last couple of decades. It is essential that we understand the need for cloud computing and how this technology can be implemented. Through this literature review we review theories of cloud computing and further elaborate on the theoretical framework for the implementation of cloud computing technology across organizations. We also detail cloud computing implementations across various governmental organizations and also across the industry. This review is expected to provide the current study with a more practical perspective on the issues and complexities of using cloud computing …