Physical Sciences and Mathematics Commons^™

Testing The Limits Of Hyperspectral Airborne Remote Sensing By Mapping Eelgrass In Elkhorn Slough, Kelley J. Bostrom

Master's Theses

Seagrass ecosystems are a valuable resource, but vulnerable to changing conditions in the coastal ocean. Quantification of seagrass density and distribution from aerial imagery can be applied as a tool in resource management and ecosystem health and stability monitoring. This study investigates analytical methods for mapping eelgrass beds in an optically complex shallow, turbid estuary. Hyperspectral imagery (HSI) of Elkhorn Slough, CA was collected by the Spectroscopic Aerial Mapper with Onboard Navigation (SAMSON) instrument. In-situ data of water column and benthic optical properties and Hydrolight Radiative Transfer model were used to create a spectral library describing the reflectance of Elkhorn …

Lesson Not Learned: Deepwater Horizon Research And Media Coverage Exposes Gaps In Knowledge And Risky Protocol Within The Oil Industry, Lauren Haller

Honors Theses

An insatiable thirst for oil has led poorly coordinated, risk-prone megasystems deeper into the ocean in search of new oil reserves. Profit-driven agendas at the corporate level have a top-down effect within these megasystems. Cost-cutting and risk-downplaying leaves the field employees unprepared to handle emergencies. A series of costly mistakes led to the 2010 BP Deepwater Horizon oil spill, which caused extensive damage to an already fragile ecosystem in the Gulf of Mexico. The wealth and political influence of the oil industry overpowers lax regulatory agencies and legislation-even though media and research has exposed frustrating parallels between the Deepwater Horizon …

Planning Framework Options For The Massachusetts Ocean Plan (Draft), Jack Wiggin, Kristin Uiterwyk, Steve Bliven, Dan Hellin, John Duff, David Terkla, Robert E. Bowen, Andrew A. Rosenberg, Jennie Harrington, Jill H. Swasey, Suzanne Iudicello, Robert O’Boyle, Porter Hoagland, Hauke L. Kite-Powell, Di Jin, Fara Courtney, Rich Delaney, Pat Hughes, Tracey Morin Dalton, Suzanne Goulet Orenstein, Charles N. Ehler, Fannie Douvere, Les Kaufman, Charles T. Mccaffrey Jr., Nicholas Napoli, Stephanie Moura, Kim Starbuck

David G. Terkla

The Massachusetts Ocean Partnership (MOP) Planning Frameworks Team, in consultation with the Massachusetts Executive Office of Energy and Environmental Affairs (EEA), and based on collective experience and a review of ocean, coastal and resource management programs from the US and other countries, suggests that nine elements are essential components of the framework for the Massachusetts Ocean Plan and its implementation. While management plans and programs generally have these elements in common, there are a range of options for carrying out each program component. These options were presented to structure and inform the development of the Massachusetts Ocean Plan. For the …

2010 Massachusetts Recreational Boater Survey: Final Report Submitted To The Massachusetts Ocean Partnership, Dan Hellin, Jack Wiggin, Kristin Uiterwyk, Kim Starbuck, Nicholas Napoli, David Terkla, Chris Watson, Anthony Roman, Leona Roach, Tim Welch

David G. Terkla

The Massachusetts Ocean Management Plan (Plan) completed in 2009 recognized recreational boating as an activity with “significant actual and prospective conflicts among multiple waterway uses in Massachusetts” and included the economic value of recreational boating as a key socio-economic indicator that will be used to inform coastal management. At the time of Plan completion, statistically robust recreational boating data were identified as an important need for comprehensive ocean planning. To fill this data gap, the 2010 Massachusetts Recreational Boater Survey gathered information on boating activity in Massachusetts’ coastal and ocean waters directly from recreational boaters. Researchers sent 10,000 surveys to …

New Frontiers In Ocean Exploration: The 2011 E/V Nautilus Field Season, K. Bell, R. Ballard, D. Coleman, C. Roman, M. Brennan, T. Turanli, M. Duman, S. Carey, P. Nomikou, M. Marani, M. Rosi, J. Austin, M. Canals, J. Karson, L. Mayer, Y. Makovsky

Christopher N. Roman

In the summer of 2011, the Exploration Vessel NAUTILUS is undertaking a four-month expedition to the Black, Aegean and Mediterranean Seas, and North Atlantic Ocean. The primary goal of the NAUTILUS is to create a focus of international leadership for the development and integration of leading-edge technologies, educational programs, field operations, and public outreach programs for ocean exploration, in partnership with NOAA, National Geographic Society, Office of Naval Research, and other sponsors. To do so, the program uses a complement of deep submergence vehicle systems and “telepresence” technologies to engage scientists, educators and the public, both at sea and ashore, …

Remote Analysis Of Grain Size Characteristic In Submarine Pyroclastic Deposits From Kolumbo Volcano, Greece, Clara Smart, D. P. Whitesell, Christopher N. Roman, Steven Carey

Graduate School of Oceanography Faculty Publications

Grain size characteristics of pyroclastic deposits provide valuable information about source eruption energetics and depositional processes. Maximum size and sorting are often used to discriminate between fallout and sediment gravity flow processes during explosive eruptions. In the submarine environment the collection of such data in thick pyroclastic sequences is extremely challenging and potentially time consuming. A method has been developed to extract grain size information from stereo images collected by a remotely operated vehicle (ROV). In the summer of 2010 the ROV Hercules collected a suite of stereo images from a thick pumice sequence in the caldera walls of Kolumbo …

Detection Of Diffuse Sea Floor Venting Using Structured Light Imaging, Gabrielle Inglis, Clara Smart, Christopher Roman, Steven Carey

Graduate School of Oceanography Faculty Publications

Efficiently identifying and localizing diffuse sea floor venting at hydrothermal and cold seep sites is often difficult. Actively venting fluids are usually identified by a temperature induced optical shimmering seen during direct visual inspections or in video data collected by vehicles working close to the sea floor. Relying on such direct methods complicates establishing spatial relations between areas within a survey covering a broad area. Our recent work with a structured light laser system has shown that venting can also be detected in the image data in an automated fashion. A structured light laser system consists of a camera and …

High Resolution Sea Floor Bathymetry Using High Frequency Multibeam Sonar And Structured Light Laser Imaging, C. Roman, G. Inglis, C. Smart, I. Vaughn, S. Carey

Christopher N. Roman

Detailed bathymetric maps of the sea floor with centimeter level resolution can be produced by underwater vehicles using multibeam sonars and structured light laser imaging. Over spatial scales up to tens of thousands of square meters it is possible to produce maps gridded to sub centimeter levels. This level of accuracy demands detailed treatments of the sensor relative data, the vehicle navigation data and the vehicle to sensor position and rotational offsets. The presented results will show comparisons between these two sensor modalities. Data have a been collected during recent field programs to the Kolumbo volcanic crater and the Southern …

Remote Analysis Of Grain Size Characteristic In Submarine Pyroclastic Deposits From Kolumbo Volcano, Greece, C. Smart, D. P. Whitesell, C. Roman, S. Carey

Christopher N. Roman

Grain size characteristics of pyroclastic deposits provide valuable information about source eruption energetics and depositional processes. Maximum size and sorting are often used to discriminate between fallout and sediment gravity flow processes during explosive eruptions. In the submarine environment the collection of such data in thick pyroclastic sequences is extremely challenging and potentially time consuming. A method has been developed to extract grain size information from stereo images collected by a remotely operated vehicle (ROV). In the summer of 2010 the ROV Hercules collected a suite of stereo images from a thick pumice sequence in the caldera walls of Kolumbo …

Detection Of Diffuse Sea Floor Venting Using Structured Light Imaging, G. Inglis, C. Smart, C. Roman, S. Carey

Christopher N. Roman

Efficiently identifying and localizing diffuse sea floor venting at hydrothermal and cold seep sites is often difficult. Actively venting fluids are usually identified by a temperature induced optical shimmering seen during direct visual inspections or in video data collected by vehicles working close to the sea floor. Relying on such direct methods complicates establishing spatial relations between areas within a survey covering a broad area. Our recent work with a structured light laser system has shown that venting can also be detected in the image data in an automated fashion. A structured light laser system consists of a camera and …

Estimating Oil Concentration And Flow Rate With Calibrated Vessel-Mounted Acoustic Echo Sounders, Thomas C. Weber, Alex De Robertis, Shep Smith, Samuel F. Greenaway, Larry A. Mayer, Glen Rice

Center for Coastal and Ocean Mapping

As part of a larger program aimed at evaluating acoustic techniques for mapping the distribution of subsurface oil and gas associated with the Deepwater Horizon-Macondo oil spill, observations were made on June 24 and 25, 2010 using vessel-mounted calibrated single-beam echo sounders on the National Oceanic and Atmospheric Administration ship Thomas Jefferson. Coincident with visual observations of oil at the sea surface, the 200-kHz echo sounder showed anomalously high-volume scattering strength in the upper 200 m on the western side of the wellhead, more than 100 times higher than the surrounding waters at 1,800-m distance from the wellhead, …

Concept Tests For A New Wire Flying Vehicle Designed To Achieve High Horizontal Resolution Profiling In Deep Water, Chris Roman, Dave Hebert

Graduate School of Oceanography Faculty Publications

Efficiently profiling the water column to achieve both high vertical and horizontal resolution from a moving vessel in deep water is difficult. Current solutions, such as CTD tow-yos, moving vessel profilers, and undulating tow bodies, are limited by ship speed or water depth. As a consequence, it is difficult to obtain oceanographic sections with sufficient resolution to identify many relevant scales over the deeper sections of the water column. This paper presents a new concept for a profiling vehicle that slides up and down a towed wire in a controlled manner using the lift created by wing foils. The wings …

Production And Fate Of Transparent Exopolymer Particles In The Ocean, Oliver Wurl, Lisa Miller, Svein Vagle

OES Faculty Publications

The production and fate of transparent exopolymer particles (TEP) have been investigated in various oceanic regions (tropical, temperate, and polar), from the sea surface microlayer (SML) to the deep ocean. Accumulation of TEP within the mixed layer was observed even in the absence of phytoplankton blooms, indicating abiotic processes are important in TEP production. The abiotic TEP aggregation rates measured in the tropical and temperate North Pacific and the Arctic Ocean averaged between 8 and 12 μmol C L^-1 d-¹. Depth profiles from under sea ice in the Arctic revealed the highest TEP concentrations, potentially released by …

Environmental Influences On Juvenile Fish Abundances In A River-Dominated Coastal System, Laure Carassou, Brian Dzwonkowski, Frank J. Hernandez, Jr., Sean P. Powers, William M. Graham, Kyeong Park, John Mareska

University Faculty and Staff Publications

We investigated the influence of climatic and environmental factors on variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in …

Effect Of Reworking And Bioturbation On Sedimentary Reactive Iron Within A Microtidal Estuary, Amy Kathleen Pitts

OES Theses and Dissertations

Mixed redox conditions in sediments due to physical reworking may allow for enhanced remineralization of refractory organic matter due to Fe(III) redox cycling. In part this may occur because easily reducible iron oxides can be used by heterotrophic bacteria to remineralize the organic carbon. This phenomena has been observed in bioturbated sediments and in areas where physical factors (such as strong bottom currents) constantly rework the sediments. To specifically determine the effects of physical reworking and bioturbation on concentrations of easily reducible iron oxides, reactive iron concentrations were measured in surface sediments taken from two contrasting sites in the York …

Circulation Of The Western Antarctic Peninsula: Implications For Biological Production, Maria Andrea Piñones Valenzuela

OES Theses and Dissertations

The western Antarctic Peninsula (wAP) continental shelf is characterized by large persistent populations of Antarctic krill ( Enphausia superba) and by regions of enhanced concentrations of marine mammals and other predators (hot spots). This study focused on understanding the role of ocean circulation in providing retention/connectivity of wAP Antarctic krill populations and in maintaining biological hot spot regions. Numerical Lagrangian particle tracking simulations obtained from the Regional Ocean Modeling System (ROMS) configured for the wAP region provided quantitative estimates of retention, immigration and emigration from the wAP continental shelf. Additional simulations with a one-dimensional temperature-dependent growth model for krill …

Quantification Of Nitrate Sources And Sinks Using A Water Quality Network In Morro Bay Estuary, California, Johanna Nadia Jean Weston

Master's Theses

Using an instrumented water quality network in Morro Bay Estuary, California from 2007 to 2010 (15 min sampling frequency), this study addressed the two objectives of constructing a nitrate budget and assessing the influence of sampling frequency on water quality parameters. These two objectives led to the submission of an original report of research (Appendix A) and a note (Appendix B) to peer-reviewed journals.

The first objective was to characterize the high spatial and temporal variation in physical parameters and nitrate concentrations and to construct a nitrate budget quantifying sources and sinks of nitrate from the ocean, streams, and groundwater, …

A Once And Future Gulf Of Mexico Ecosystem: Restoration Recommendations Of An Expert Working Group, Charles H. Peterson, Felicia C. Coleman, Jeremy B. C. Jackson, R. Eugene Turner, Gilbert T. Rowe, Richard T. Barber, Karen A. Bjorndal, Robert S. Carney, Robert K. Cowen, Jonathan M. Hoekstra, James T. Hollibaugh, Shirley B. Laska, Richard A. Luettich, Jr., Craig W. Osenberg, Stephen E. Roady, Stanley Senner, John M. Teal, Ping Wong

Faculty Publications

The Deepwater Horizon (DWH) well blowout released more petroleum hydrocarbons into the marine environment than any previous U.S. oil spill (4.9 million barrels), fouling marine life, damaging deep sea and shoreline habitats and causing closures of economically valuable fisheries in the Gulf of Mexico. A suite of pollutants—liquid and gaseous petroleum compounds plus chemical dispersants—poured into ecosystems that had already been stressed by overfishing, development and global climate change. Beyond the direct effects that were captured in dramatic photographs of oiled birds in the media, it is likely that there are subtle, delayed, indirect and potentially synergistic impacts of these …

Effects Of Trace Metal Limitation On Oxidative Stress In Zooxanthellae And Its Role In Coral Bleaching, Mark Wells, J. Malcolm Shick, Charles G. Trick, Walter Dunlap, Paul Long

University of Maine Office of Research Administration: Grant Reports

Coral bleaching has increased dramatically in frequency, severity, and geographic extent since the 1980s and this trend is anticipated to continue, causing major environmental and economic impacts in tropical regions. This bleaching - the loss by corals of their photosynthetic endosymbiotic dinoflagellates (zooxanthellae; Symbiodinium spp.) - involves increased oxidative stress arising from the combined effects of elevated temperature at high light intensities. Although the production of reactive oxygen species (ROS) in corals and phytoplankton is routine during daylight hours, the failure of antioxidant defenses in zooxanthellae becomes catastrophic under comparatively small changes in environmental temperature, because reef corals live close …

Rapid: A Unique Cruise Opportunity To Test The Effect Of Trace Metal Limitation On Oxidative Stress And Coral Bleaching, Mark L. Wells, J. Malcolm Shick

University of Maine Office of Research Administration: Grant Reports

Intellectual Merit. Coral bleaching has increased dramatically in frequency, severity, and geographic extent since the 1980's and this trend is anticipated to continue, causing major environmental and economic impacts in tropical regions. This bleaching, or loss by corals of their photosynthetic endosymbiotic dinoflagellates (zooxanthellae; Symbiodinium spp.), appears to result from increased oxidative stress arising from the combined effects of elevated temperature at high light intensities. However, the mechanisms underlying this failure are not understood. The premise of the PIs' current project entitled "Effects of Trace Metal Limitation on Oxidative Stress in Zooxanthellae and Its Role in Coral Bleaching" (OCE - …

Collaborative Research: Centers For Ocean Science Education Excellence - Oceans In The Earth-Sun System, Annette Decharon

University of Maine Office of Research Administration: Grant Reports

This award establishes a new Center for Ocean Science Education Excellence (COSEE) via awards to the Bigelow Laboratory for Ocean Sciences (0528706), the University of Maine (0528702), and the University of New Hampshire (0528686). The main goals of this thematic Center are to broaden understanding of the oceans in the context of the earth and solar systems and to help the COSEE network reach rural and inland audiences. The PIs will pioneer a system of interfaces, tools, and resources to reach underserved and underrepresented groups, and to bring ocean sciences to inland audiences by presenting it in the context of …

Radon As An Indicator Of Limited Cross-Shelf Mixing Of Submarine Groundwater Discharge Along An Open Ocean Beach In The South Atlantic Bight During Observed Hypoxia, Clayton Mccoy, Richard Viso, Richard Peterson, Susan Libes, Brent Lewis, John Ledoux, George Voulgaris, Erik Smith, Denise Sanger

George Voulgaris

Amongst other ocean state parameters, the development of a wave measurement program was supported as part of the Southeast U.S. Atlantic Coastal Ocean Observing System (SEACOOS). The program focused on supporting nearshore wave measurements using both cabled and autonomous systems but also examined the feasibility of using HF Radar systems for remote estimation of wave parameters. The nearshore stations have provided a significant database on directional wave climate for a number of nearshore locations in the region that provide valuable information to coastal engineers and managers for sustainable development along the coast of the southeastern United States. The ability of …

Rumbling In The Benthos: Acoustic Ecology Of The California Mantis Shrimp Hemisquilla Californiensis, E. Staaterman, C. Clark, A. Gallagher, M. Devries, T. Claverie, S. Patek

Faculty Publications, Biological Sciences

Although much research has focused on acoustic mapping and exploration of the benthic environment, little is known about the acoustic ecology of benthic organisms, particularly benthic crustaceans. Through the use of a coupled audio–video system, a hydrophone array, and an autonomous recording unit, we tested several hypotheses about the field acoustics of a benthic marine crustacean, Hemisquilla califor­niensis. Living in muddy burrows in southern California, these large mantis shrimp produce low frequency ‘rumbles’ through muscle vibrations. First, we tested whether acoustic signals are similar in the field and in the laboratory, and discovered that field-produced rumbles are more acoustically and …

Sustainability Series: Creating Student Sustainable Practices Within Sfs And Beyond, Staci Hagen

Capstone Collection

The School for Field Studies (SFS) is a non-profit environmental research based study abroad program that integrates academic, research, social and community activities in a holistic education model. One of the six SFS centers is the Center for Coastal Studies (CCS) in Baja California Sur, Mexico. At CCS, students take courses that explore local and regional environmental, social and economic problems and they have the opportunity to design their own research project. Even though students study these problems and come up with sustainable solutions, it does not mean that they make personal choices with the least impact on the environment. …

Controls On The Formation Of Algal Blooms In The Lower Chesapeake Bay And Its Tributaries, Ryan Eric Morse

OES Theses and Dissertations

Algal blooms occur seasonally in the Chesapeake Bay and its tributaries, and while the consequences of algal blooms have been qualitatively and quantitatively assessed, the causes of algal blooms and mechanisms of bloom initiation are still not well understood despite decades of research. In order to understand nutrient dynamics and other factors that promote the initiation of algal blooms, the Lafayette River, a tidal sub-estuary of Chesapeake Bay that experiences seasonal algal blooms, was sampled daily in the fall of 2005. Three phytoplankton blooms (Chlorophyll a concentrations exceeding twice the average of monthly measurements from 2000-2009) occurred during this period, …

Model-Based Analyses Of Nitrogen On The Mid-Atlantic Bight Continental Shelf, Tian Tian

OES Theses and Dissertations

The biogeochemistry of continental shelf systems is an important, but poorly quantified, component of the global cycling of nitrogen and carbon. In this study, simulations obtained from a one-dimensional (ID) biogeochemical model developed for the Middle Atlantic Bight (MAB) portion of the U.S. eastern continental shelf were analyzed to investigate nitrogen cycling processes. The 1D model included lower trophic level interactions and was forced by advective fields obtained from a corresponding three-dimensional biogeochemical model. Taylor and target diagram analyses, which compared in situ measurements of sea surface temperature (SST) and salinity, and chlorophyll and particulate organic carbon (POC) derived from …

Analysis Of Roms Estimated Posterior Error Utilizing 4dvar Data Assimilation, Joseph Patrick Horton

Mathematics

The appropriateness of the approximate error calculated by the Regional Ocean Modeling System (ROMS) is analyzed using Four-Dimensional Data Assimilation (4DVAR) performed on a numerical model of the San Luis Obispo Bay. An effective method of sampling data to minimize the actual error associated with the assimilated numerical model is explored by using different data sampling methods. An idealized state of the SLO bay region ("Real Run") is created to be used as the real ocean, then a numerical model of this region is created approximating this Real Run; this is known as the "Simulated State". By taking samples from …

Submerged Pressure Differential Wave Energy Converter, Christopher F. Ferguson

Physics

As supplies of fossil fuels are becoming depleted, it is necessary to look for alternative sources of energy. The ocean is a vast, largely untapped source of renewable energy. This project attempts to design a device which can cheaply and reliably convert the energy from ocean waves into usable electrical energy. Computer simulations and oceanographic knowledge are utilized to develop a working design for an entirely submerged wave energy conversion device.

2010 Massachusetts Recreational Boater Survey: Final Report Submitted To The Massachusetts Ocean Partnership, Dan Hellin, Jack Wiggin, Kristin Uiterwyk, Kim Starbuck, Nicholas Napoli, David Terkla, Chris Watson, Anthony Roman, Leona Roach, Tim Welch

Urban Harbors Institute Publications

The Massachusetts Ocean Management Plan (Plan) completed in 2009 recognized recreational boating as an activity with “significant actual and prospective conflicts among multiple waterway uses in Massachusetts” and included the economic value of recreational boating as a key socio-economic indicator that will be used to inform coastal management. At the time of Plan completion, statistically robust recreational boating data were identified as an important need for comprehensive ocean planning.

To fill this data gap, the 2010 Massachusetts Recreational Boater Survey gathered information on boating activity in Massachusetts’ coastal and ocean waters directly from recreational boaters. Researchers sent 10,000 surveys to …

Systems Ideas For The Scientific And Societal Imperatives Of The Coastal Ocean: Case Of The Bp Oil Gusher In The Gulf Of Mexico, Spring & Summer 2010, Christopher Mooers

Systems Science Friday Noon Seminar Series

In recent decades, great progress has been made in advancing the scientific understanding of the coastal ocean (i.e., the 200 nautical mile Exclusive Economic Zone (EEZ)) across a broad set of disciplines. Simultaneously, the societal use of the coastal ocean has skyrocketed through, for example, increased shipping & boating, sports & commercial fishing, and exploitation of non-living resources, such as, oil & gas extraction and sand & gravel mining. International law and national policy assign coastal nations the responsibility for stewardship (i.e., wise management) of their respective EEZs. The scope of the stewardship and applications can be summarized as (1) …