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Full-Text Articles in Physical Sciences and Mathematics
Sequence Specific And High Affinity Recognition Of 5′-Acgcgt-3′ By Rationally Designed Pyrrole-Imidazole H-Pin Polyamides: Thermodynamic And Structural Studies., Hilary Mackay, Toni Brown, Peter Uthe, Laura Westrate, Alan Sielaff, Justin Jones, James Lajiness, Jerome Kluza, Caroline O'Hare, Binh Nguyen, Zach Davis, Chrystal Bruce, W. Wilson, John Hartley, Moses Lee
Sequence Specific And High Affinity Recognition Of 5′-Acgcgt-3′ By Rationally Designed Pyrrole-Imidazole H-Pin Polyamides: Thermodynamic And Structural Studies., Hilary Mackay, Toni Brown, Peter Uthe, Laura Westrate, Alan Sielaff, Justin Jones, James Lajiness, Jerome Kluza, Caroline O'Hare, Binh Nguyen, Zach Davis, Chrystal Bruce, W. Wilson, John Hartley, Moses Lee
Chrystal D. Bruce
Imidazole (Im) and Pyrrole (Py)-containing polyamides that can form stacked dimers can be programmed to target specific sequences in the minor groove of DNA and control gene expression. Even though various designs of polyamides have been thoroughly investigated for DNA sequence recognition, the use of H-pin polyamides (covalently cross-linked polyamides) has not received as much attention. Therefore, experiments were designed to systematically investigate the DNA recognition properties of two symmetrical H-pin polyamides composed of PyImPyIm (5) or f-ImPyIm (3e, f=formamido) tethered with an ethylene glycol linker. These compounds were created to recognize the cognate 5′-ACGCGT-3′ through an overlapped and staggered …
Modifying The N-Terminus Of Polyamides: Pyimpyim Has Improved Sequence Specificity Over F-Impyim, Toni Brown, Hilary Mackay, Mark Turlington, Arden Sutterfield, Traci Smith, Alan Sielaff, Laura Westrate, Chrystal Bruce, Jerome Kluza, Caroline O'Hare, Binh Nguyen, W. Wilson, John Hartley, Moses Lee
Modifying The N-Terminus Of Polyamides: Pyimpyim Has Improved Sequence Specificity Over F-Impyim, Toni Brown, Hilary Mackay, Mark Turlington, Arden Sutterfield, Traci Smith, Alan Sielaff, Laura Westrate, Chrystal Bruce, Jerome Kluza, Caroline O'Hare, Binh Nguyen, W. Wilson, John Hartley, Moses Lee
Chrystal D. Bruce
Seven N-terminus modified derivatives of a previously published minor-groove binding polyamide (f-ImPyIm, 1) were synthesized and the biochemical and biophysical chemistry evaluated. These compounds were synthesized with the aim of attaining a higher level of sequence selectivity over f-ImPyIm (1), a previously published strong minor-groove binder. Two compounds possessing a furan or a benzofuran moiety at the N-terminus showed a footprint of 0.5μM at the cognate ACGCGT site (determined by DNase I footprinting); however, the specificity of these compounds was not improved. In contrast, PyImPyIm (4) produced a footprint of 0.5μM but showed a superior specificity using the same technique. …
'Partial Derivatives: Are You Kidding?': Teaching Thermodynamics Using Virtual Substance, Chrystal Bruce, Carribeth Bliem, John Papanikolas
'Partial Derivatives: Are You Kidding?': Teaching Thermodynamics Using Virtual Substance, Chrystal Bruce, Carribeth Bliem, John Papanikolas
Chrystal D. Bruce
No abstract provided.