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Full-Text Articles in Physical Sciences and Mathematics

An Investigation Into The Adduct Forming Potential Of Drugs Of Abuse With Peptides And Proteins, Richard Allen Gilliland Aug 2018

An Investigation Into The Adduct Forming Potential Of Drugs Of Abuse With Peptides And Proteins, Richard Allen Gilliland

FIU Electronic Theses and Dissertations

Hemoglobin and serum albumin, two prevalent proteins in human blood, contain unbound cysteine thiol moieties, creating a nucleophilic site with the potential for covalent modification by reactive chemical species. These covalent modifications, called “adducts”, are stable entities that accumulate during acute and chronic exposure and remain covalently bound for the life-span of the protein. Despite their current use as exposure markers for a variety of compounds, the use of adducts in assessing exposure to drugs of abuse has not yet been explored. The goal of this work was to examine the in vitro adduct forming capability of selected drugs of …


Conformational Dynamics Of Biomolecules By Trapped Ion Mobility Spectrometry Dynamics, Juan Camilo Molano-Arévalo Apr 2018

Conformational Dynamics Of Biomolecules By Trapped Ion Mobility Spectrometry Dynamics, Juan Camilo Molano-Arévalo

FIU Electronic Theses and Dissertations

One of the main goals in structural biology is to understand the folding mechanisms and three-dimensional structure of biomolecules. Many biomolecular systems adopt multiple structures as a function of their microenvironment, which makes them difficult to be characterized by traditional structural biology tools (e.g., NMR, X-ray crystallography). As an alternative, complementary tools that can capture and sample multiple conformations needed to be developed. In the present work, we pioneered the application of a new variant of ion mobility spectrometry, trapped ion mobility spectrometry (TIMS), which provides high mobility resolving power and the possibility to study kinetically trapped intermediates as a …


Study Of Proteoforms, Dna And Complexes Using Trapped Ion Mobility Spectrometry-Mass Spectrometry, Alyssa Lynn Garabedian Mar 2018

Study Of Proteoforms, Dna And Complexes Using Trapped Ion Mobility Spectrometry-Mass Spectrometry, Alyssa Lynn Garabedian

FIU Electronic Theses and Dissertations

The characterization of biomolecules and biomolecular complexes represents an area of significant research activity because of the link between structure and function. Drug development relies on structural information in order to target certain domains. Many traditional biochemical techniques, however, are limited by their ability to characterize only certain stable forms of a molecule. As a result, multidimensional approaches, such as ion mobility mass spectrometry coupled to mass spectrometry (IMS-MS), are becoming very attractive tools as they provide fast separation, detection and identification of molecules, in addition to providing three-dimensional shape for structural elucidation. The present work expands the use and …


Discovery And Targeted Monitoring Of Biomarkers Using Liquid Chromatography, Ion Mobility Spectrometry , And Mass Spectrometry, Kendra J. Adams Mar 2018

Discovery And Targeted Monitoring Of Biomarkers Using Liquid Chromatography, Ion Mobility Spectrometry , And Mass Spectrometry, Kendra J. Adams

FIU Electronic Theses and Dissertations

The complexity of biological matrices makes the detection and quantification of compounds of interest challenging. For successful targeted or untargeted identification of compounds within a biological environment, the use of complementary separation techniques is routinely required; in many situations, a single analytical technique is not sufficient. In the present dissertation, a multidimensional analytical technique was developed and evaluated, a combination of new sample preparation/extraction protocols, liquid chromatography, trapped ion mobility and mass spectrometry (e.g., LC-TIMS-MS and LC-TIMS-MS/MS). The performance of these techniques was evaluated for the detection of polybrominated diphenyl ethers metabolites, polychlorinated biphenyls metabolites in human plasma, opioid metabolites …