Physical Sciences and Mathematics Commons^™

Gravity Wave Heating And Cooling Of The Thermosphere: Sensible Heat Flux And Viscous Flux Of Kinetic Energy, Michael P. Hickey Ph.D., R. L. Walterscheid, G. Schubert

Publications

Total wave heating is the sum of the convergence of the sensible heat flux and the divergence of the viscous flux of wave kinetic energy. Numerical simulations, using a full-wave model of the viscous damping of atmospheric gravity waves propagating in a nonisothermal atmosphere, are carried out to explore the relative contributions of these sources of wave heating as a function of wave properties and altitude. It is shown that the sensible heat flux always dominates in the lower thermosphere, giving a lower region of heating and an upper stronger region of cooling. The heating due to the divergence of …

Fragile Binary Candidates In The Sdss Dr8 Spectroscopic Archive, J. K. Zhao, Terry D. Oswalt, G. Zhao

Publications

We present a catalog of 80 very wide fragile binary candidates (projected separations >10,000 AU) from the Sloan Digital Sky Survey Data Release Eight spectral archive. The pairs were selected based on proper motion, radial velocity, metallicity, and photometric parallax criteria. The angular separations of these pairs range from 3'' to 250''. The peak in the metallicity distribution of these pairs is about −0.5 dex of solar metallicity. Space motions and reduced proper motion diagrams indicate that all these pairs are members of the disk. The chromospheric activity index S_HK of each component in 38 binary candidates having spectra …

Emergent Behavior In A Coupled Economic And Coastline Model For Beach Nourishment, Eli D. Lazarus, D E. Mcnamara, M D. Smith, S Gopalakrishnan, A B. Murray

Publications

Developed coastal areas often exhibit a strong systemic coupling between shoreline dynamics and economic dynamics. "Beach nourishment", a common erosion-control practice, involves mechanically depositing sediment from outside the local littoral system onto an actively eroding shoreline to alter shoreline morphology. Natural sediment-transport processes quickly rework the newly engineered beach, causing further changes to the shoreline that in turn affect subsequent beach-nourishment decisions. To the limited extent that this landscape/economic coupling has been considered, evidence suggests that towns tend to employ spatially myopic economic strategies under which individual towns make isolated decisions that do not account for their neighbors. What happens …

Lithium In The Upper Centaurus Lupus And Lower Centaurus Crux Subgroups Of Scorpius-Centaurus, Eric J. Bubar, Marc Schaeuble, Jeremy R. King, Eric E. Mamajek, John R. Stauffer

Publications

We utilize spectroscopically derived model atmosphere parameters and the Li i λ6104 subordinate line and the λ6708 doublet to derive lithium abundances for 12 members of the Upper Centaurus Lupus and Lower Centaurus Crux subgroups of the Scorpius–Centaurus OB Association. The results indicate any intrinsic Li scatter in our 0.9–1.4 M stars is limited to ∼0.15 dex, consistent with the lack of dispersion in 1.0 M stars in the 100 Myr Pleiades and 30–50 Myr IC 2391 and 2602 clusters. Both ab initio uncertainty estimates and the derived abundances themselves indicate that the λ6104 line yields abundances with equivalent or …

Progress In The Prediction Of Pka Values In Proteins, Emil Alexov, Ernest L. Mehler, Nathan Baker, Antonio Baptista, Yong Huang, Francesca Milletti, Jens Erik Nielsen, Damien Farrell, Tommy Carstensen, Mats H.M. Olsson, Jana K. Shen, Jim Warwicker, Sarah Williams, J Michael Word

Publications

The pK_a-cooperative aims to provide a forum for experimental and theoretical researchers interested in protein pK_a values and protein electrostatics in general. The first round of the pK_a-cooperative, which challenged computational labs to carry out blind predictions against pK_as experimentally determined in the laboratory of Bertrand Garcia-Moreno, was completed and results discussed at the Telluride meeting (July 6–10, 2009). This article serves as an introduction to the reports submitted by the blind prediction participants that will be published in a special issue of PROTEINS: Structure, Function and Bioinformatics. …

Developing Hybrid Approaches To Predict Pka Values Of Ionizable Groups, Shawn Witham, Kemper Talley, Lin Wang, Zhe Zhang, Daquan Gao, Wei Yang, Emil Alexov

Publications

Accurate predictions of pKa values of titratable groups require taking into account all relevant processes associated with the ionization/deionization. Frequently, however, the ionization does not involve significant structural changes and the dominating effects are purely electrostatic in origin allowing accurate predictions to be made based on the electrostatic energy difference between ionized and neutral forms alone using a static structure. On another hand, if the change of the charge state is accompanied by a structural reorganization of the target protein, then the relevant conformational changes have to be taken into account in the pKa calculations. Here we report a hybrid …

Orbital Separation Amplification In Fragile Binaries With Evolved Components, K. B. Johnston, Terry D. Oswalt

Publications

The secular stellar mass-loss causes an amplification of the orbital separation in fragile, common proper motion, binary systems with separations of the order of 1000 A.U. In these systems, companions evolve as two independent coeval stars as they experience negligible mutual tidal interactions or mass transfer. We present models for how post-main sequence mass-loss statistically distorts the frequency distribution of separations in fragile binaries. These models demonstrate the expected increase in orbital seapration resulting from stellar mass-loss, as well as a perturbation of associated orbital parameters. Comparisons between our models and observations resulting from the Luyten survey of wide visual …

Application Of Asymptotic Expansions For Maximum Likelihood Estimators' Errors To Gravitational Waves From Inspiraling Binary Systems: The Network Case, Salvatore Vitale, Michele Zanolin

Publications

This paper describes the most accurate analytical frequentist assessment to date of the uncertainties in the estimation of physical parameters from gravitational waves generated by nonspinning binary systems and Earth-based networks of laser interferometers. The paper quantifies how the accuracy in estimating the intrinsic parameters mostly depends on the network signal to noise ratio (SNR), but the resolution in the direction of arrival also strongly depends on the network geometry. We compare results for 6 different existing and possible global networks and two different choices of the parameter space. We show how the fraction of the sky where the one …

Book Review: The Cambridge Atlas Of Herschel Objects, T. D. Oswalt

Publications

This document is Dr. Oswalt’s review of The Cambridge Atlas of Herschel Objects by James Mullaney and Wil Tirion Cambridge, 2011 183p, 0521138175 $35.00, 9780521138178 $35.00.

Electronic Charge And Spin Density Distribution In A Quantum Ring With Spin-Orbit And Coulomb Interactions, Csaba Daday, Andrei Manolescu, D C. Marinescu, Vidar Gudmundsson

Publications

Charge and spin density distributions are studied within a nanoring structure endowed with Rashba and Dresselhaus spin-orbit interactions (SOIs). For a small number of electrons, in the presence of an external magnetic field and of the Coulomb interaction, the energy spectrum of the system is calculated through an exact numerical diagonalization procedure. The eigenstates thus determined are used to estimate the charge and spin densities around the ring. We find that when more than two electrons are considered, the charge density deformations induced by SOIs are dramatically flattened by the Coulomb repulsion, while the spin density deformations are amplified.

A Modified Surface On Titanium Deposited By A Blasting Process, Caroline O' Sullivan, Peter O'Hare, Greg Byrne, Liam O'Neill, Katie B. Ryan, Abina M. Crean

Publications

Abstract

: Hydroxyapatite (HA) coating of hard tissue implants is widely employed for its biocompatible and osteoconductive properties as well as its improved mechanical properties. Plasma technology is the principal deposition process for coating HA on bioactive metals for this application. However, thermal decomposition of HA can occur during the plasma deposition process, resulting in coating variability in terms of purity, uniformity and crystallinity, which can lead to implant failure caused by aseptic loosening. In this study, CoBlast™, a novel blasting process has been used to successfully modify a titanium (V) substrate with a HA treatment using a dopant/abrasive regime. …

Cluster Observations Of Bow Shock Energetic Ion Transport Through The Magnetosheath Into The Cusp, K. J. Trattner, S. M. Petrinec, S. A. Fuselier, K. Nykyri, E. Kronberg

Publications

The observation of energetic particles by polar orbiting satellites in the magnetospheric cusp resulted in a controversy about their source region. It has been suggested that these cusp energetic particles (CEP) with significant fluxes from magnetosheath energies up to several hundred keV/e are accelerated locally in the cusp by the turbulence found in cusp diamagnetic cavities (CDC). As an alternative to the local acceleration region, the quasi‐parallel shock is successful as a source region for CEP events. Energetic ions accelerated at the bow shock can be transported downstream and enter the cusp along newly reconnected field lines. Composition and energy …

Two-Scale Microstructure Dynamics, Arkadi Berezovski, Mihhail Berezovski, Juri Engelbrecht

Publications

Wave propagation in materials with embedded two different microstructures is considered. Each microstructure is characterized by its own length scale. The dual internal variables approach is adopted yielding in a Mindlin-type model including both microstructures. Equations of motion for microstructures are coupled with the balance of linear momentum for the macromotion, but not coupled with each other. Corresponding dispersion curves are provided and scale separation is pointed out.

The 25 Parsec Local White Dwarf Population, Jerry B. Holberg, Terry D. Oswalt, Edward M. Sion, George P. Mccook

Publications

We have extended our detailed survey of the local white dwarf population from 20 pc to 25 pc, effectively doubling the sample volume, which now includes 232 stars. In the process new stars within 20 pc have been added, a more uniform set of distance estimates as well as improved spectral and binary classifications are available. The present 25 pc sample is estimated to be about 68% complete (the corresponding 20 pc sample is now 86% complete). The space density of white dwarfs is unchanged at 4.8 ± 0.5 x 10-3 pc-3. This new study includes a white dwarf mass …

Left Ventricular Assist Devices: Engineering Design Considerations, Marwan A. Simaan, Eduardo Divo, George Faragallah, Yu Wang

Publications

Patients with end-stage congestive heart failure awaiting heart transplantation often wait long periods of time (300 days or more on the average) before a suitable donor heart becomes available. The medical community has placed increased emphasis on the use of Left Ventricular Assist Devices or LVADs that can substitute for, or enhance, the function of the natural heart while the patient is waiting for the heart transplant (Poirier, 1997; Frazier & Myers, 1999). Essentially, a rotary LVAD is a pump that operates continuously directing blood from the left ventricle into the aorta by avoiding the aortic valve. Generally speaking, the …

Detailed Abundances Of The Solar Twins 16 Cygni And B Cygni: Constraining Planet Formation Models, Simon C. Schuler, Katia Cunha, Verne V. Smith, Luan Ghezzi, Jeremy R. King, Constantine P. Deliyannis, Ann Merchant Boesgaard

Publications

Results of a detailed abundance analysis of the solar twins 16 Cyg A and 16 Cyg B based on high-resolution, high signal-to-noise ratio echelle spectroscopy are presented. 16 Cyg B is known to host a giant planet while no planets have yet been detected around 16 Cyg A. Stellar parameters are derived directly from our high-quality spectra, and the stars are found to be physically similar, with ΔTeff = +43 K, Δ log g =−0.02 dex, and Δξ = +0.10 km s−1 (in the sense of A − B), consistent with previous findings. Abundances of 15 elements are derived and …

X-Ray Monitoring Of Classical Novae In The Central Region Of M 31 Iii. Autumn And Winter 2007/2008 And 2008/2009, M. Henze, W. Pietsch, F. Haberl, M. Hernanz, G. Sala, D. Hartzidimitriou, M. Della Velle, A. Rau, Dieter H. Hartmann, V. Burwitz

Publications

Context. Classical novae (CNe) represent the major class of supersoft X-ray sources (SSSs) in the central region of the galaxy M 31. Aims. We performed a dedicated monitoring of the M 31 central region with XMM-Newton and Chandra between Nov. 2007 and Feb. 2008 and between Nov. 2008 and Feb. 2009, respectively, to find SSS counterparts of CNe, determine the duration of their SSS phase, and derive physical outburst parameters. Methods. We systematically searched our data for X-ray counterparts of CNe, determined their X-ray light curves and characterised their spectra using blackbody fits and white dwarf (WD) atmosphere models. Additionally, …

A Missense Mutation In Clic2 Associated With Intellectual Disability Is Predicted By In Silico Modeling To Affect Protein Stability And Dynamics, Shawn Witham, Kyoko Takano, Charles Schwartz, Emil Alexov

Publications

Large-scale next generation resequencing of X chromosome genes identified a missense mutation in the CLIC2 gene on Xq28 in a male with X-linked intellectual disability (XLID) and not found in healthy individuals. At the same time, numerous nsSNPs (nonsynonomous SNP) have been reported in the CLIC2 gene in healthy individuals indicating that the CLIC2 protein can tolerate amino acid substitutions and be fully functional. To test the possibility that p.H101Q is a disease-causing mutation, we performed in silico simulations to calculate the effects of the p.H101Q mutation on CLIC2 stability, dynamics, and ionization states while comparing the effects obtained for …

Helical Antiferromagnetic Ordering In The Lowest Landau Level Of A Semiconductor Superlattice, Liqiu Zheng, D C. Marinescu

Publications

When subjected to a tilted magnetic field, the ground state of a semiconductor superlattice (SL) with two identical quantum wells per unit cell is shown to exhibit different magnetic configurations that are dependent on the strength and direction of the field and the SL characteristics. Intra- and interunit cell tunneling between the wells, assumed to be infinitely attractive, generate an energy miniband structure of the lowest Landau level that, in cooperation with the Zeeman splitting, creates, at certain points in the momentum space, an energy difference between opposite-spin single-particle states that can be overcome by the Coulomb interaction. Within the …

Particle‐In‐Cell Simulation Of Incoherent Scatter Radar Spectral Distortions Related To Beam‐Plasma Interactions In The Auroral Ionosphere, M. A. Diaz, M. Oppenheim, J. L. Semeter, M. Zettergren

Publications

An electrostatic parallel particle‐in‐cell (EPPIC) code that allows for particle beam injections and multiple boundary conditions is used to investigate the beam‐plasma interaction and its manifestations in the incoherent scatter (IS) spectrum. Specifically, the code is used to investigate anomalous enhancements in the ion acoustic line through the destabilization of the plasma by injection (or precipitation) of low‐energy electron beams. This enhancement of the ion acoustic line is a form of IS distortion commonly observed in the vicinity of auroral arcs called the naturally enhanced ion‐acoustic line (NEIAL). Simulations confirm the parametric decay of Langmuir waves as a plausible mechanism, …

Turbulence And Wave Dynamics Across Gas–Liquid Interfaces, Shahrdad Sajjadi, Julian Hunt, Stephen Belcher, Derek Stretch, John Clegg

Publications

Mechanisms are reviewed here for the distortion of turbulent flows near thin density interfaces and their effects on transfer processes across them. Firstly the results of rapid distortion calculations show how the in homogeneous eddy structure depends on whether the turbulence is generated above or below the interface, or in both regions. The flow is unstratified and the buoyancy forces are stable and strong enough relative to the inertial forces that the interface is continuous. It is shown that as the surface blocks the vertical turbulent eddy motions, horizontal straining motions are induced which affect the surface viscous layers and …

Nova M31n 2007-12b: Supersoft X-Rays Reveal An Intermediate Polar?, W. Pietsch, M. Henze, F. Haberl, M. Hernanz, G. Sala, Dieter H. Hartmann, M. Della Valle

Publications

Context. In the central part of M 31, a high number of optical novae can be targeted within the field of view of the XMM-Newton EPIC and Chandra HRC-I X-ray detectors. A special monitoring program of the area has allowed us to investigate supersoft emission of individual novae in detail and perform a statistical analysis of the sample. Aims. For the He/N nova M31N 2007-12b, we aimed to constrain the time of appearance of a supersoft source (SSS) and the duration of the SSS state as well as determine the spectral and time variability while the source was bright. Methods. …

Using A Systemic Model Of Accident For Improving Innovative Technologies: Application And Limitations Of The Stamp Model To A Process For Treatment Of Contaminated Substances, Karim Hardy, Franck Guarnieri

Publications

This paper presents the STAMP accident model, based on systems theory, and describes its application in the context of risk prevention related to the remediation of contaminated materials. The implementation of the model is described, and results are presented both in methodological and technical terms.

The 2009 Samoa And 2010 Chile Tsunamis As Observed In The Ionosphere Using Gps Total Electron Content, David A. Galvan, Attila Komjathy, Michael P. Hickey Ph.D., Anthony J. Mannucci

Publications

Ground‐based Global Positioning System (GPS) measurements of ionospheric total electron content (TEC) show variations consistent with atmospheric internal gravity waves caused by ocean tsunamis following two recent seismic events: the Samoa earthquake of 29 September 2009 and the Chile earthquake of 27 February 2010. Both earthquakes produced ocean tsunamis that were destructive to coastal communities near the epicenters, and both were observed in tidal gauge and buoy measurements throughout the Pacific Ocean. We observe fluctuations in TEC correlated in time, space, and wave properties with these tsunamis using the Jet Propulsion Laboratory’s Global Ionospheric Mapping software. These TEC measurements were …

Thermal Conductance Of A Two-Channel Kondo Model, C P. Moca, A Roman, D C. Marinescu

Publications

A theory of thermal transport in a two-channel Kondo system, such as the one formed by a small quantum dot coupled to two leads and to a larger dot, is formulated. The interplay of the two screening constants allow an exploration of the Fermi liquid and non-Fermi liquid regimes. By using analytical, as well as numerical, renormalization group methods, we study the temperature dependence of the thermal conductance and the Lorentz number. We find that in the low-temperature limit, the Lorentz number attains its universal value, irrespective of the nature of the ground state.

Group Velocity And Energy Flux In The Thermosphere: Limits On The Validity Of Group Velocity In A Viscous Atmosphere, R. L. Walterscheid, Michael P. Hickey Ph.D.

Publications

The response to wave forcing of finite duration comprises a transient forerunner and the steady state signal (or simply the signal). It is the latter that carries information on the spectral content of the forcing, and the signal velocity is the velocity at which wave energy flows. To the extent that group velocity is a good measure of the energy flow velocity, the ray‐tracing formalism is a valid description of signal propagation. We have examined vertical group velocities as a measure of vertical energy flow velocity for gravity and acoustic waves propagating into the dissipative lower thermosphere. We find that …

On The Origin Of Fluctuations In The Cusp Diamagnetic Cavity, K. Nykyri, A. Otto, E. Adamson, A. Tjulin

Publications

We have analyzed Cluster magnetic field and plasma data during high‐altitude cusp crossing on 14 February 2003. Cluster encountered a diamagnetic cavity (DMC) during northward interplanetary magnetic field (IMF) conditions, and as IMF rotated southward, the spacecraft reencountered the cavity more at the sunward side. The DMC is characterized by a high level of magnetic field fluctuations and high‐energy electrons and protons. Ultralow‐frequency turbulence has been suggested as a mechanism to accelerate particles in DMC. We demonstrate in this paper for the first time that many of the low‐frequency fluctuations in the cavity are back and forth motion of the …

Ro-Vibrational Co Detected In The Β Pictoris Circumstellar Disk, Matthew R. Troutman, Kenneth H. Hinkle, Joan R. Najita, Terrence W. Rettig, Sean D. Brittain

Publications

We present high-resolution near-infrared spectra of β Pictoris—a nearby young star with a debris disk. Fundamental low-J CO absorption lines are detected and strict upper limits are placed on the flux of v = 2–1 low-J CO emission lines. The limit on the UV fluorescent emission flux in the v = 2–1 lines is used to place a tight constraint on the inner extent of the CO gas. Assuming Hi is the primary collision partner, the sub-thermal population of the low-J v = 0 rotational levels constrains the density of the gas in the disk to nH = (2.5+7.1 −1.2)×105 …

On The Role Of Electrostatics In Protein–Protein Interactions, Zhe Zhang, Shawn Witham, Emil Alexov

Publications

The role of electrostatics in protein–protein interactions and binding is reviewed in this paper. A brief outline of the computational modeling, in the framework of continuum electrostatics, is presented and the basic electrostatic effects occurring upon the formation of the complex are discussed. The effect of the salt concentration and pH of the water phase on protein–protein binding free energy is demonstrated which indicates that the increase of the salt concentration tends to weaken the binding, an observation that is attributed to the optimization of the charge–charge interactions across the interface. It is pointed out that the pH-optimum (pH of …

Order Independence In Asynchronous Cellular Automata, Matthew Macauley, Jon Mccammond, Henning S. Mortveit

Publications

A sequential dynamical system, or SDS, consists of an undirected graph Y, a vertex-indexed list of local functions F_Y, and a permutation pi of the vertex set (or more generally, a word w over the vertex set) that describes the order in which these local functions are to be applied. In this article we investigate the special case where Y is a circular graph with n vertices and all of the local functions are identical. The 256 possible local functions are known as Wolfram rules and the resulting sequential dynamical systems are called finite asynchronous elementary cellular automata, or ACAs, …