Physical Sciences and Mathematics Commons^™

Trade-Offs Between Three Forest Ecosystem Services Across The State Of New Hampshire, Usa: Timber, Carbon, And Albedo, David A. Lutz, Elizabeth A. Burakowski, Mackenzie B. Murphy, Mark E. Borsuk

Dartmouth Scholarship

Forests are more frequently being managed to store and sequester carbon for the purposes of climate change mitigation. Generally, this practice involves long-term conservation of intact mature forests and/or reductions in the frequency and intensity of timber harvests. However, incorporating the influence of forest surface albedo often suggests that long rotation lengths may not always be optimal in mitigating climate change in forests characterized by frequent snowfall. To address this, we investigated trade-offs between three ecosystem services: carbon storage, albedo-related radiative forcing, and timber provisioning. We calculated optimal rotation length at 498 diverse Forest Inventory and Analysis forest sites in …

Development And Validation Of An Epitope Prediction Tool For Swine (Pigmatrix) Based On The Pocket Profile Method, Andres H. Gutiérrez, William D. Martin, Chris Bailey-Kellogg, Frances Terry, Leonard Moise, Anee S. De Groot

Dartmouth Scholarship

Background: T cell epitope prediction tools and associated vaccine design algorithms have accelerated the development of vaccines for humans. Predictive tools for swine and other food animals are not as well developed, primarily because the data required to develop the tools are lacking. Here, we overcome a lack of T cell epitope data to construct swine epitope predictors by systematically leveraging available human information. Applying the “pocket profile method ”, we use sequence and structural similarities in the binding pockets of human and swine major histocompatibility complex proteins to infer Swine Leukocyte Antigen (SLA) peptide binding preferences. We developed epitope-prediction …

Modeling Neurovascular Coupling From Clustered Parameter Sets For Multimodal Eeg-Nirs, M. Tanveer Talukdar, H. Robert Frost, Solomon G. G. Diamond

Dartmouth Scholarship

Despite significant improvements in neuroimaging technologies and analysis methods, the fundamental relationship between local changes in cerebral hemodynamics and the underlying neural activity remains largely unknown. In this study, a data driven approach is proposed for modeling this neurovascular coupling relationship from simultaneously acquired electroencephalographic (EEG) and near-infrared spectroscopic (NIRS) data. The approach uses gamma transfer functions to map EEG spectral envelopes that reflect time-varying power variations in neural rhythms to hemodynamics measured with NIRS during median nerve stimulation. The approach is evaluated first with simulated EEG-NIRS data and then by applying the method to experimental EEG-NIRS data measured from …

Noble Gases Identify The Mechanisms Of Fugitive Gas Contamination In Drinking-Water Wells Overlying The Marcellus And Barnett Shales, Thomas H. Darrah, Avner Vengosh, Robert B. Jackson, Nathaniel R. R. Warner, Robert J. Poreda

Dartmouth Scholarship

Horizontal drilling and hydraulic fracturing have enhanced energy production but raised concerns about drinking-water contamination and other environmental impacts. Identifying the sources and mechanisms of contamination can help improve the environmental and economic sustainability of shale-gas extraction. We analyzed 113 and 20 samples from drinking-water wells overlying the Marcellus and Barnett Shales, respectively, examining hydrocarbon abundance and isotopic compositions (e.g., C2H6/CH4, δ13C-CH4) and providing, to our knowledge, the first comprehensive analyses of noble gases and their isotopes (e.g., 4He, 20Ne, 36Ar) in groundwater near shale-gas wells. We addressed two questions. (i) Are elevated levels of hydrocarbon gases in …

Diagnosis-Specific Readmission Risk Prediction Using Electronic Health Data: A Retrospective Cohort Study, Courtney Hebert, Chaitanya Shivade, Randi Foraker, Jared Wasserman, Caryn Roth, Hagop Mekhjan, Stanley Lemeshow, Peter Embi

Dartmouth Scholarship

Background: Readmissions after hospital discharge are a common occurrence and are costly for both hospitals and patients. Previous attempts to create universal risk prediction models for readmission have not met with success. In this study we leveraged a comprehensive electronic health record to create readmission-risk models that were institution- and patient- specific in an attempt to improve our ability to predict readmission. Methods: This is a retrospective cohort study performed at a large midwestern tertiary care medical center. All patients with a primary discharge diagnosis of congestive heart failure, acute myocardial infarction or pneumonia over a two-year time period were …

Relationship Between Altitude And Lithium In Groundwater In The United States Of America: Results Of A 1992–2003 Study, Rebekah S. Huber, Namkug Kim, Carl E. Renshaw, Perry F. Renshaw, Douglas Kondo

Dartmouth Scholarship

Therapeutic dosages of lithium are known to reduce suicide rates, which has led to investigations of confounding environmental risk factors for suicide such as lithium in groundwater. It has been speculated that this might play a role in the potential relationship between suicide and altitude. A recent study in Austria involving geospatial analysis of lithium in groundwater and suicide found lower levels of lithium at higher altitudes. Since there is no reason to suspect this correlation is universal given variation in geology, the current study set out to investigate the relationship between altitude and lithium in groundwater in the United …

Orienteering In Knowledge Spaces: The Hyperbolic Geometry Of Wikipedia Mathematics, Gregory Leibon, Daniel N. Rockmore

Dartmouth Scholarship

In this paper we show how the coupling of the notion of a network with directions with the adaptation of the four-point probe from materials testing gives rise to a natural geometry on such networks. This four-point probe geometry shares many of the properties of hyperbolic geometry wherein the network directions take the place of the sphere at infinity, enabling a navigation of the network in terms of pairs of directions: the geodesic through a pair of points is oriented from one direction to another direction, the pair of which are uniquely determined. We illustrate this in the interesting example …

Using Economic Instruments To Develop Effective Management Of Invasive Species: Insights From A Bioeconomic Model, Shana M. Mcdermott, Rebecca E. Irwin, Brad W. Taylor

Dartmouth Scholarship

Economic growth is recognized as an important factor associated with species invasions. Consequently, there is increasing need to develop solutions that combine economics and ecology to inform invasive species management. We developed a model combining economic, ecological, and sociological factors to assess the degree to which economic policies can be used to control invasive plants. Because invasive plants often spread across numerous properties, we explored whether property owners should manage invaders cooperatively as a group by incorporating the negative effects of invader spread in management decisions (collective management) or independently, whereby the negative effects of invasive plant spread are ignored …

Measures Of Centrality Based On The Spectrum Of The Laplacian, Scott D. Pauls, Daniel Remondini

Dartmouth Scholarship

We introduce a family of new centralities, the k-spectral centralities. k-Spectral centrality is a measurement of importance with respect to the deformation of the graph Laplacian associated with the graph. Due to this connection, k-spectral centralities have various interpretations in terms of spectrally determined information.

We explore this centrality in the context of several examples. While for sparse unweighted net- works 1-spectral centrality behaves similarly to other standard centralities, for dense weighted net- works they show different properties. In summary, the k-spectral centralities provide a novel and useful measurement of relevance (for single network elements as well as whole subnetworks) …

Magnetic Field Amplification In Electron Phase-Space Holes And Related Effects, R. A. Treumann, W. Baumjohann

Dartmouth Scholarship

No abstract provided.

A Model Of So-Called "Zebra" Emissions In Solar Flare Radio Burst Continua, R. A. Treumann, R. Nakamura, W. Baumjohann

Dartmouth Scholarship

A simple mechanism for the generation of elec- tromagnetic “Zebra” pattern emissions is proposed. “Zebra” bursts are regularly spaced narrow-band radio emissions on the otherwise broadband radio continuum emitted by the ac- tive solar corona. The mechanism is based on the generation of an ion-ring distribution in a magnetic mirror geometry in the presence of a properly directed field-aligned electric po- tential field. Such ion-rings or ion-conics are well known from magnetospheric observations. Under coronal condi- tions they may become weakly relativistic. In this case the ion-cyclotron maser generates a number of electromagnetic ion-cyclotron harmonics which modulate the electron maser …

Exact Solutions For Social And Biological Contagion Models On Mixed Directed And Undirected, Degree-Correlated Random Networks, Joshua L. Payne, Kameron Decker Harris, Peter Sheridan Dodds

Dartmouth Scholarship

We derive analytic expressions for the possibility, probability, and expected size of global spread- ing events starting from a single infected seed for a broad collection of contagion processes acting on random networks with both directed and undirected edges and arbitrary degree-degree correla- tions. Our work extends previous theoretical developments for the undirected case, and we provide numerical support for our findings by investigating an example class of networks for which we are able to obtain closed-form expressions.

Direct, Physically-Motivated Derivation Of The Contagion Condition For Spreading Processes On Generalized Random Networks, Peter Sheridan Dodds, Kameron Decker Harris, Joshua L. Payne

Dartmouth Scholarship

For a broad range of single-seed contagion processes acting on generalized random networks, we derive a unifying analytic expression for the possibility of global spreading events in a straightforward, physically intuitive fashion. Our reasoning lays bare a direct mechanical understanding of an archetypal spreading phenomena that is not evident in circuitous extant mathematical approaches.

Downward Auroral Currents From The Reconnection Hall-Region, R. A. Treumann, R. Nakamura, W. Baumjohann

Dartmouth Scholarship

We present a simple (stationary) mechanism capable of generating the auroral downward field-aligned electric field that is needed for accelerating the ionospheric electron component up into the magnetosphere and confining the ionospheric ions at low latitudes (as is required by observation of an ionospheric cavity in the downward auroral current region). The lifted ionospheric electrons carry the downward auroral current. Our model is based on the assumption of collisionless reconnection in the tail current sheet. It makes use of the dynamical difference between electrons and ions in the ion inertial region surrounding the reconnection X-line which causes Hall currents to …

Evidence For Particle Acceleration To The Knee Of The Cosmic Ray Spectrum In Tycho’S Supernova Remnant, Kristoffer A. Eriksen, John P. Hughes, Carles Badenes, Robert Fesen

Dartmouth Scholarship

Supernova remnants (SNRs) have long been assumed to be the source of cosmic rays (CRs) up to the "knee" of the CR spectrum at 10^15 eV, accelerating particles to relativistic energies in their blast waves by the process of diffusive shock acceleration (DSA). Since cosmic ray nuclei do not radiate efficiently, their presence must be inferred indirectly. Previous theoretical calculations and X-ray observations show that CR acceleration modifies significantly the structure of the SNR and greatly amplifies the interstellar magnetic field. We present new, deep X-ray observations of the remnant of Tycho's supernova (SN 1572, henceforth Tycho), which reveal a …

On Arc-Polarized Structures In The Solar Wind, B U. Sonnerup, S E. Haaland, G Paschmann

Dartmouth Scholarship

A theoretical model is proposed to account for some of the behavior of arc-polarized magnetic structures seen in the solar wind. To this end, an exact analytical solu- tion is developed that describes infinite plane wave trains of arbitrary amplitude in a plasma governed by ideal Hall MHD. The main focus is on intermediate-mode wave trains, which display double-branched magnetic hodogram signatures sim- ilar to those seen in the solar wind. The theoretically derived hodograms have field rotation in the ion-polarized sense at a slightly depressed field magnitude on one branch and an electron-polarized rotation at a slightly enhanced field …

Failure To Replicate A Genetic Association May Provide Important Clues About Genetic Architecture, Casey S. Greene, Nadia M. Penrod, Scott M. Williams, Jason H. Moore

Dartmouth Scholarship

Replication has become the gold standard for assessing statistical results from genome-wide association studies. Unfortunately this replication requirement may cause real genetic effects to be missed. A real result can fail to replicate for numerous reasons including inadequate sample size or variability in phenotype definitions across independent samples. In genome-wide association studies the allele frequencies of polymorphisms may differ due to sampling error or population differences. We hypothesize that some statistically significant independent genetic effects may fail to replicate in an independent dataset when allele frequencies differ and the functional polymorphism interacts with one or more other functional polymorphisms. To …

Field Line Distribution Of Density At L=4.8 Inferred From Observations By Cluster, R E. Denton, P Décréau, M J. Engebretson, F Darrouzet

Dartmouth Scholarship

For two events observed by the CLUSTER space- craft, the field line distribution of mass density ρ was inferred from Alfve ́n wave harmonic frequencies and compared to the electron density ne from plasma wave data and the oxy- gen density nO+ from the ion composition experiment. In one case, the average ion mass M≡ρ/ne was about 5amu (28 October 2002), while in the other it was about 3 amu (10 September 2002). Both events occurred when the CLUSTER 1 (C1) spacecraft was in the plasmatrough. Nevertheless, the electron density ne was significantly lower for the first event (ne =8 …

Mechanistic Home Range Models And Resource Selection Analysis: A Reconciliation And Unification, Paul R. Moorcroft, Alex Barnett

Dartmouth Scholarship

In the three decades since its introduction, resource selection analysis (RSA) has become a widespread method for analyzing spatial patterns of animal relocations obtained from telemetry studies. Recently, mechanistic home range models have been proposed as an alternative framework for studying patterns of animal space-use. In contrast to RSA models, mechanistic home range models are derived from underlying mechanistic descriptions of individual movement behavior and yield spatially explicit predictions for patterns of animal space-use. In addition, their mechanistic underpinning means that, unlike RSA, mechanistic home range models can also be used to predict changes in space-use following perturbation. In this …

De Canum Venaticorum: A Bright, Eclipsing Red Dwarf–White Dwarf Binary, E. J. M. Van Den Besselaar, R. Greimel, L. Morales-Rueda, G. Nelemans, J. R. Thorstensen

Dartmouth Scholarship

Close white dwarf - red dwarf binaries must have gone through a common-envelope phase during their evolution. DE CVn is a detached white dwarf - red dwarf binary with a relatively short (~8.7 hours) orbital period. Its brightness and the presence of eclipses makes this system ideal for a more detailed study. From a study of photometric and spectroscopic observations of DE CVn we derive the system parameters which we discuss in the frame work of common-envelope evolution. Photometric observations of the eclipses are used to determine an accurate ephemeris. From a model fit to an average low-resolution spectrum of …

Auroral Ion Outflow: Low Altitude Energization, Kristina A. Lynch, J. L. Semeter, M. Zettergren, P. Kintner, R. Arnoldy, E. Klatt, J. Labelle, R. G. Michell

Dartmouth Scholarship

The SIERRA nightside auroral sounding rocket made observations of the origins of ion upflow, at topside F-region altitudes (below 700 km), comparatively large topside plasma densities (above 20 000/cc), and low energies (10 eV). Upflowing ions with bulk velocities up to 2 km/s are seen in conjunction with the poleward edge of a nightside substorm arc. The upflow is limited within the poleward edge to a region (a) of northward convection, (b) where Alfvenic ´ and Pedersen conductivities are well-matched, leading to good ionospheric transmission of Alfvenic power, and (c) of ´ soft electron precipitation (below 100 eV). Models of …

Bounded Search For De Novo Identification Of Degenerate Cis-Regulatory Elements, Jonathan M. Carlson, Arijit Chakravarty, Radhika S. Khetani, Robert H. Gross

Dartmouth Scholarship

The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential cis-regulatory elements. However, in practice many cis-regulatory elements are highly degenerate, precluding the use of an exhaustive word-counting strategy for their identification. While numerous methods exist for inferring base distributions using a position weight matrix, recent studies suggest that the independence assumptions inherent in the model, as well as the inability to reach a global optimum, limit this approach.

The Noao Fundamental Plane Survey - Iii. Variations In The Stellar Populations Of Red-Sequence Galaxies From The Cluster Core To The Virial Radius, Russell J. S. Smith, Michael J. Hudson, John R. Lucey, Jenica E. Nelan, Gary A. Wegner

Dartmouth Scholarship

We analyse absorption line-strength indices for ~3000 red-sequence galaxies in 94 nearby clusters, to investigate systematic variations of their stellar content with location in the host cluster. The data are drawn from the NOAO Fundamental Plane Survey. Our adopted method is a generalization of that introduced by Nelan et al. to determine the global age-mass and metallicity-mass relations from the same survey. We find strong evidence for a change in galaxy properties, at fixed mass, over a range from the cluster centre to the virial radius, R_200. For example, red-sequence galaxies further out in the clusters have weaker Mgb5177 (at …

Principal Component Analysis For Predicting Transcription-Factor Binding Motifs From Array-Derived Data, Yunlong Liu, Matthew P Vincenti, Hiroki Yokota

Dartmouth Scholarship

The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to transcription-factor binding motifs (TFBMs). In order to select a critical set of TFBMs from genomic DNA information and an array-derived data, an efficient algorithm to solve a combinatorial optimization problem is required. Although computational approaches based on evolutionary algorithms are commonly employed, an analytical algorithm would be useful to predict TFBMs at nearly no computational cost and evaluate varying modelling conditions. Singular value decomposition (SVD) is a powerful method to derive primary components of a given matrix. Applying SVD …

Model Simulations Of A Shock‐Cloud Interaction In The Cygnus Loop, Daniel J. Patnaude, Robert A. Fesen

Dartmouth Scholarship

We present optical observations and two-dimensional hydrodynamic modeling of an isolated shocked ISM cloud. Hα images taken in 1992.6 and 2003.7 of a small optical emission cloud along the southwestern limb of the Cygnus Loop were used to measure positional displacements of ~01 yr^-1 for surrounding Balmer-dominated emission filaments and 0025-0055 yr^-1 for internal cloud emission features. These measurements imply transverse velocities of 250 and 80-140 km s^-1 for ambient ISM and internal cloud shocks, respectively. A lack of observed turbulent gas stripping at the cloud-ISM boundary in the Hα images suggests that there is not an …

The Oxford-Dartmouth Thirty Degree Survey - Ii. Clustering Of Bright Lyman Break Galaxies: Strong Luminosity-Dependent Bias At Z = 4, Paul D. Allen, Leonidas A. Moustakas, Gavin Dalton, Emily Macdonald, Chris Blake, Lee Clewley, Catherine Heymans, Gary Wegner

Dartmouth Scholarship

We present measurements of the clustering properties of bright (L > L*) z~4 Lyman break galaxies (LBGs) selected from the Oxford-Dartmouth Thirty Degree Survey (ODT). We describe techniques used to select and evaluate our candidates and calculate the angular correlation function, which we find best fitted by a power law, ω(θ) =Awθ−β with Aw= 15.4 (with θ in arcsec), using a constrained slope of β= 0.8. Using a redshift distribution consistent with photometric models, we deproject this correlation function and find a comoving Mpc in a Ωm= 0.3 flat λ cosmology for iAB≤ 24.5. This corresponds to a linear bias value …

A Subgroup Algorithm To Identify Cross-Rotation Peaks Consistent With Non-Crystallographic Symmetry, Ryan H. Lilien, Chris Bailey-Kellogg, Amy C. Anderson, Bruce R. Donald

Dartmouth Scholarship

Molecular replacement (MR) often plays a prominent role in determining initial phase angles for structure determination by X-ray crystallography. In this paper, an efficient quaternion-based algorithm is presented for analyzing peaks from a cross-rotation function in order to identify model orientations consistent with proper non-crystallographic symmetry (NCS) and to generate proper NCS-consistent orientations missing from the list of cross-rotation peaks. The algorithm, CRANS, analyzes the rotation differences between each pair of cross-rotation peaks to identify finite subgroups. Sets of rotation differences satisfying the subgroup axioms correspond to orientations compatible with the correct proper NCS. The CRANS algorithm was first …