Physical Sciences and Mathematics Commons^™

Microplastic Quantification On The Effect Of Endoparasite Communities In Florida Seabirds, Sarah N. Prieto

All HCAS Student Capstones, Theses, and Dissertations

Microplastics are being studied in a variety of different projects to better understand their impact and threat to wildlife species. Although there is an understanding that microplastics are affecting our wildlife, there are still questions about how coastal seabirds come to ingest them and how the ingestion is altering critical biological processes, such as that for endoparasite communities. This project aims to determine a better understanding of two main objectives: assessment of the presence of secondary ingestion of microplastics in coastal seabirds due to the fish species they prey on and relationship between microplastics and endoparasite communities' structure and state …

Computational Fluid Dynamics Modeling Of Internal Wave Interactions On Conch Reef, Florida Keys, Megan Miller

All HCAS Student Capstones, Theses, and Dissertations

Internal waves breaking on continental shelves play a significant role in mixing and nutrient delivery to coral reef ecosystems. As internal solitary waves, or solitons, propagate shoreward onto continental slopes, they can become unstable and break into turbulent bores that bring cool, nutrient-rich sub-thermocline water shoreward onto coral reefs. The propagation of turbulent bores generated by internal waves interacting with a complex surface creates high-frequency variabilities in the thermal and nutrient environment of Conch Reef in the Florida Keys, which has been studied previously. Here, I have created a three-dimensional model using ANSYS Fluent Computational Fluid Dynamics (CFD) software to …

Addressing Water Hyacinth (Pontederia Crassipes) Impacts On Aquatic Biota In Lake Okeechobee, Joseph Salerno

All HCAS Student Capstones, Theses, and Dissertations

The incursion of water hyacinth, Pontederia crassipes in Lake Okeechobee has resulted in management systems to be implemented to reduce the coverage of the invasive macrophyte. Its residence in the Lake Okeechobee ecosystem and the effects it has on organisms in the lake, whether it be positive or harmful is unknown. This study attempted to assess the potential effects that water hyacinth has on aquatic biota in Lake Okeechobee. Biotic data were collected on open water, water hyacinth covered, and native vegetation covered habitats via hook-and-line fishing, electrofishing, baited minnow traps, and the sampling of plant roots over a thirteen-month …

Investigating The Effects Of A Southward Flow In The Southeastern Florida Shelf Using Robotic Instruments, Alfredo Quezada

All HCAS Student Capstones, Theses, and Dissertations

We deployed a Slocum G3 glider fitted with an acoustic Doppler current profiler (ADCP), a Conductivity-Temperature-Depth sensor (CTD), optics sensor channels, and a propeller on the Southeastern Florida shelf. The ADCP and CTD provide continuous measurements of Northern and Eastern current velocity components, salinity, temperature, and density, throughout the water column in a high-current environment. The optics sensor channels are able to provide measurements of chlorophyll concentrations, colored dissolved organic matter (CDOM), and backscatter particle counts. Additionally, for one of the glider deployments, we deployed a Wirewalker wave-powered profiling platform system also fitted with an ADCP and a CTD in …

Prevalence, Faunal Composition, And Vertical Distribution Of Bioluminescence In The Pelagic Gulf Of Mexico: Fishes, Crustaceans, Cephalopods And Gelatinous Megaplankton, Devynne M. Brown

All HCAS Student Capstones, Theses, and Dissertations

Bioluminescence is the phenomenon of light emission by living organisms. It occurs through a chemical reaction within an organism and serves various purposes. The diversity of bioluminescent capabilities and occurrence in unrelated taxa suggest that bioluminescence has evolved independently numerous times amongst taxa thriving in certain environments. One such environment is the deep ocean, where little to no sunlight penetrates the water column, specifically in the mesopelagic (200-1000 m depth) and bathypelagic (> 1000 m) zones. The mesopelagic and bathypelagic zones have been extensively sampled and well documented in the Gulf of Mexico (GoM), one of the few places globally …

Evaluating The Effectiveness Of The Internal Transcribed Sequences (Its) As Dna Barcodes To Estimate Fungal Diversity, Jailisa Linares

All HCAS Student Capstones, Theses, and Dissertations

Universal phylogenetic markers such as the nuclear ribosomal internal transcribed sequences (ITS), specifically ITS1 and ITS2, are routinely used to estimate fungal diversity in environmental samples. However, numerous studies report differences in the performance and efficacy of ITS1 and ITS2 in documenting fungal diversity. To better understand the implications of using ITS1 versus ITS2, a comprehensive representation of the diverse fungal taxa was necessary to conduct a meta-analysis of their use across multiple fungal taxa. In order to address this, a thorough literature review was conducted to compare and contrast the use of ITS1 and ITS2 as effective DNA barcodes. …

Microscale To Mesoscale Modeling Of The Ocean Under Tropical Cyclones: Effects Of Sea Spray And Surfactants On Tropical Cyclone Intensity And Air-Sea Gas Exchange, Breanna Lynn Cain Vanderplow

All HCAS Student Capstones, Theses, and Dissertations

Tropical cyclone intensity prediction remains a challenge despite computational and observational developments because successful intensity forecasting requires implementing a multitude of atmospheric and oceanic processes. Hurricane Maria 2017 and Hurricane Dorian 2019 serve as prime examples of rapidly intensifying storms that devastated communities in the Caribbean. A lack of understanding and parameterization of crucial physics involved in tropical cyclone intensity in existing forecast models may have led to these and other forecasting errors.

Microscale physical processes at the air-sea interface are a major factor in intensification of tropical cyclones that are often unaccounted for in forecasting models since they are …

Heavy Metal Content In Eggs From Wild And Managed-Care Humboldt Penguins, Mya Daniels-Abdulahad

All HCAS Student Capstones, Theses, and Dissertations

The Humboldt penguin, Spheniscus humboldti, has been recognized as a Vulnerable species (IUCN) for nearly two decades, with annual population declines of more than 10% largely attributed to pervasive anthropogenic activity occurring throughout the species’ range of Peru and Chile. Due to recent mining expansions near the species’ largest Peruvian rookery, located at the Punta San Juan (PSJ) reserve, the exposure of breeding individuals to elevated concentrations of trace elements (e.g., heavy metals) in the marine environment is a preeminent concern. While heavy metal toxicity is dependent on metal species, dose, route of exposure, and the physiologic parameters of …

Movement, Behavior, And Trophic Ecology Of A Pelagic Predator Guild In The Eastern Tropical Pacific Ocean, Ryan Keith Logan

All HCAS Student Capstones, Theses, and Dissertations

Pelagic apex predators exert strong influences on ecological communities, and often support valuable commercial or recreational fisheries worldwide. Yet, due to their rarity and pelagic lifestyle, many species, such as billfishes, have proven particularly difficult to study at resolutions necessary to define dynamics of recovery from fishery interaction, physical interaction with environmental features and prey exploitation, and competitive interactions among other billfish predators. This leads to a paucity of knowledge on billfish ecology and habitat use, and hinders management efforts. With the ever-improving and miniaturization of technology and oceanographic datasets, the ability to define and quantify these interactions of fish …

Examining The Relationship Between Stomiiform Fish Morphology And Their Ecological Traits, Mikayla L. Twiss

All HCAS Student Capstones, Theses, and Dissertations

Trait-based ecology characterizes individuals’ functional attributes to better understand and predict their interactions with other species and their environments. Utilizing morphological traits to describe functional groups has helped group species with similar ecological niches that are not necessarily taxonomically related. Within the deep-pelagic fishes, the Order Stomiiformes exhibits high morphological and species diversity, and many species undertake diel vertical migration (DVM). While the morphology and behavior of stomiiform fishes have been extensively studied and described through taxonomic assessments, the connection between their form and function regarding their DVM types, morphotypes, and daytime depth distributions is not well known. Here, three …

Larval Ecology Of Atlantic Bluefin Tuna (Thunnus Thynnus): New Insights From Otolith Microstructure, Biotic, And Abiotic Analyses From The Gulf Of Mexico And Mediterranean Sea, Estrella Malca

All HCAS Student Capstones, Theses, and Dissertations

Atlantic bluefin tuna (ABT), Thunnus thynnus, spawn in the Gulf of Mexico (GoM) and the Mediterranean Sea (MED). Spawning occurs within narrow temporal and environmental parameters. Efforts to characterize growth of ABT in wild conditions revealed a wide range of growth variability during the early life stages. This series of studies examined potential biotic and abiotic influences of larval growth from seven ABT cohorts, and identified several key drivers of growth for this commercially valuable species. A detailed investigation of larval dynamics using otolith microstructure was conducted as follows. First, companion growth curves and stable isotope analysis from the same …

Benthic Community Dynamics And Stony Coral Demographics In Florida In Relation To Acute Disturbances And Chronic Pressures, Nicholas P. Jones

All HCAS Student Capstones, Theses, and Dissertations

The persistence of coral reef communities is threatened by a suite of pressures operating at varying spatial and temporal scales. In general, acute disturbances (short term stochastic events such as marine heatwaves or hurricanes) and chronic pressures, such as ocean warming, have caused the most significant changes to stony coral assemblages (order Scleractinia) and continue to impair recovery potential. Additionally, many coral reefs are subject to local chronic anthropogenic pressures resulting in poor water quality or sedimentation, which further impact stony corals and shape benthic community structure, particularly near urbanized coastlines. For the viability of communities on coral reefs, a …

Assessment Of Microplastics In Southeastern Florida Forage Fishes, Maria Kappos

All HCAS Student Capstones, Theses, and Dissertations

Microplastics threaten the health of numerous marine organisms at all trophic levels. Currently, the topic is well studied among larger predators such as marine birds, dolphins, pelagic fishes, and even herbivorous organisms such as manatees. However, knowledge of microplastics present in organisms at lower trophic levels is poorly understood. The aim of this study was to assess the presence of microplastics in lower trophic level forage fishes. To gain a clear depiction of microplastics in the forage fishes of South Florida, four locations were sampled. These locations were classified into two categories, urban (Port Everglades and Northern Biscayne Bay) and …

Polychlorinated Organic Contaminants In Baleen From North Pacific Ocean Whales, Briana R. Coulter

All HCAS Student Capstones, Theses, and Dissertations

Persistent organic pollutants (POP) have been detected and analyzed in various baleen whale tissues (blubber, muscles, liver, etc.) This study concentrated on detecting 7 polychlorinated biphenyls (PCB) and 14 organochlorine pesticides from baleen, a baleen whale tissue never before analyzed for POPs. These data were used to investigate temporal and geographic trends by sampling at every 1 cm interval along the length of the baleen plate. Four species of baleen whales stranded in the North Pacific Ocean were included in this study: gray (n=2), humpback (n=2), minke (n=1), and blue (n=1) whales. Organic contaminant concentrations were analyzed with respect to …

A Spatial Assessment Of Impacts To The Flats Fishery By Recreational Boating In The Florida Keys National Marine Sanctuary, Kristin Anderson

All HCAS Student Capstones, Theses, and Dissertations

The recreational flats fishery in the Florida Keys is a significant component of the marine resource-based economy, exceeding $465 million (USD) in annual economic impact. Permit (Trachinotus falcatus), bonefish (Albula vulpes), and tarpon (Megalops atlanticus) are the three main species targeted by flat fishers. Those participating in this fishery generally practice catch-and-release angling therefore, the fishery is considered a more sustainable marine use compared to more traditional commercial fisheries. However, with population and tourism rising in South Florida, the fishery is increasingly threatened by habitat degradation and user conflicts. Ongoing revisions to the Florida …

Element Contamination In Port Everglades – Preparing For Ecological Impacts, Laura White

All HCAS Student Capstones, Theses, and Dissertations

Port dredging is of economic importance worldwide but its impacts to the marine environment through the remobilization of elemental contaminants are not well understood. A massive deepening and widening of Port Everglades, Florida, will begin in 2023. Contaminated sediment disturbed during the dredging process could be released and prove to be harmful to three coral reef tracks located beginning 1.5 miles away from the port. This study focused on identifying and quantifying 14 different trace elements: arsenic (As), cadmium (Cd), cobalt (Co), chromium (Cr), copper (Cu), mercury (Hg), lead (Pb), manganese (Mn), molybdenum (Mo), nickel (Ni), selenium (Se), tin (Sn), …

Applying Integrative Systematics To Long-Standing Species Boundary Questions In The Zoanthidea, Annika Markovich

All HCAS Student Capstones, Theses, and Dissertations

The study of systematics has been around for over 200 years. Some recent systematic studies have shifted to the idea of genetic barcoding for identification and classification. This shift is notably present in the cnidarian order Zoanthidea. Systematists have employed genetic barcoding exclusively for the classification of these animals resulting in taxonomic uncertainty. A prominent Mediterranean species complex (Parazoanthus axinellae) is at the center of these taxonomic issues. Recently two color-morpho-types: “slender” yellow and “stocky” orange have been used to differentiate modern P. axinellae specimens, advancing the uncertainty associated with this complex. This lack of taxonomic identity becomes …

The Variability Of Seawater Carbonate Chemistry In Two Florida Urban Mangrove Ecosystems, Alexandrina R. Rangel

All HCAS Student Capstones, Theses, and Dissertations

Anthropogenic carbon dioxide (CO₂) emissions into the atmosphere are yielding serious impacts across the world’s ocean, including ocean acidification, sea level rise, and increasing seawater temperature. However, these changes are not occurring uniformly across all marine ecosystems. Coastal ecosystems, such as mangroves, already experience extreme and variable environmental conditions due to natural biogeochemical and physical processes. The goal of this study was to document small-scale variability in two urban mangrove ecosystems to gain insight into how ocean acidification will manifest within these systems. Using a stand-up paddleboard, a suite of sensors, and traditional bottle sampling techniques, we measured …

Optimization Of Grow-Out Of Bouldering Coral Microfragments: Land Vs. Offshore Nursery, Ashlee A. Steinberg

All HCAS Student Capstones, Theses, and Dissertations

Corals along the Florida Reef Tract and the wider Caribbean have been declining for decades. Low densities of adult colonies hinder the ability of corals to replenish themselves through sexual reproduction, thus reef managers are focusing on restoration actions that increase coral biomass. Microfragmentation is a way to quickly increase the biomass of bouldering corals by cutting the coral into small pieces which forces the coral to allocate its resources away from reproduction and back into growth, increasing its growth rate. This study assessed the optimal location for grow-out (land vs. offshore nursery) and its synergy with size of fragment …

Using Track Widths Of Loggerhead (Caretta Caretta) Sea Turtles As A Proxy For Predicting Nesting Characteristics, Kelly M. Detmer

All HCAS Student Capstones, Theses, and Dissertations

Global populations of sea turtles have suffered major declines over the past century. Thus, it is critical to determine accurate demographic parameters and abundance estimates to fill current data gaps and inform effective conservation and recovery strategies. Population models with greater complexity and predictive capacities are necessary to more accurately assess population trends and responses. This study examines the relationships between track width, female body size (as measured by straight and curved carapace lengths and widths), and nesting variables (chamber depth, clutch size, and hatching success) of loggerhead turtles (Caretta caretta) nesting in southeastern Florida. Track width was significantly …

Effects Of Surfactants On The Generation Of Sea Spray During Tropical Cyclones, Breanna L. Vanderplow

All HCAS Student Capstones, Theses, and Dissertations

Despite significant improvement in computational and observational capabilities, predicting intensity and intensification of major tropical cyclones remains a challenge. In 2017 Hurricane Maria intensified to a Category 5 storm within 24 hours, devastating Puerto Rico. In 2019 Hurricane Dorian, predicted to remain tropical storm, unexpectedly intensified into a Category 5 storm and destroyed the Bahamas. The official forecast and computer models were unable to predict rapid intensification of these storms. One possible reason for this is that key physics, including microscale processes at the air-sea interface, are poorly understood and parameterized in existing forecast models.

Under tropical cyclones, the air-sea …

Prioritizing The Largest, Oldest Corals For Disease Intervention In A Coral Disease-Ravaged Area: Southeast Florida Coral Reef Ecosystem Conservation Area, Alysha Brunelle

All HCAS Student Capstones, Theses, and Dissertations

Coral diseases appear to be more devastating than ever before. When a virulent disease ravages a coral ecosystem, it can significantly change the population’s demographics and cause local extinctions. Disease intervention response during such an event is impossible at a landscape scale, therefore priorities must be considered. Saving the largest, oldest colonies of reef-building species is a good choice due to their high fecundity and ecological function. Their size, as a proxy for age, is an indicator of their resistance to previous perturbations which may indicate higher fitness. Their size also provides habitat to many organisms and wave resistance in …

Pilot Project For Future Fast And Accurate Detection Of The Human Fecal Marker Hf183 For Presence Of Human Pollution In The New River, Angie Louis

All HCAS Student Capstones, Theses, and Dissertations

One type of pollution that has a negative impact on the environmental waters originates from fecal contamination. Identifying the source of pollution is an important step in effective resource management, mitigation, and reducing risk to human health. Microbial source tracking (MST) can be used to identify fecal pollution and to identify specific microbes in the environment and the quantitative polymerase chain reaction (qPCR) can be utilized in this analysis. In this pilot study the New River waterway, running through the City of Fort Lauderdale, was tested for a human specific bacteria Bacteroids, using the TaqMan HF183 qPCR assay (HF183/BFDrev). …

Algal Coverage Detection And Classification Using Envi: Correlation With Dissolved Oxygen Levels In Elkhorn Slough, Ca, Jason Dawson

All HCAS Student Capstones, Theses, and Dissertations

Estuaries are exposed to varying stressors, whether they be physical, chemical, or environmental. The most notable of stressors is eutrophication of coastal and inland ecosystems. This is a result of increased supply of nutrients fueling production within the system. One outcome of this increased nutrient load to the system is that of algal blooms. These blooms can impact the aesthetic appearance and degrade the quality of health of the system. Many of these coastal zones and waterways are critical habitats for many biological (some endangered) species and serve as recreational areas for human populations. Elkhorn Slough, California is one of …