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Full-Text Articles in Physical Sciences and Mathematics
Stochastic Simulation And Spatial Statistics Of Large Datasets Using Parallel Computing, Jonathan Sw Lee
Stochastic Simulation And Spatial Statistics Of Large Datasets Using Parallel Computing, Jonathan Sw Lee
Electronic Thesis and Dissertation Repository
Lattice models are a way of representing spatial locations in a grid where each cell is in a certain state and evolves according to transition rules and rates dependent on a surrounding neighbourhood. These models are capable of describing many phenomena such as the simulation and growth of a forest fire front. These spatial simulation models as well as spatial descriptive statistics such as Ripley's K-function have wide applicability in spatial statistics but in general do not scale well for large datasets. Parallel computing (high performance computing) is one solution that can provide limited scalability to these applications. This is …
Integrated Development And Parallelization Of Automated Dicentric Chromosome Identification Software To Expedite Biodosimetry Analysis, Yanxin Li
Electronic Thesis and Dissertation Repository
Manual cytogenetic biodosimetry lacks the ability to handle mass casualty events. We present an automated dicentric chromosome identification (ADCI) software utilizing parallel computing technology. A parallelization strategy combining data and task parallelism, as well as optimization of I/O operations, has been designed, implemented, and incorporated in ADCI. Experiments on an eight-core desktop show that our algorithm can expedite the process of ADCI by at least four folds. Experiments on Symmetric Computing, SHARCNET, Blue Gene/Q multi-processor computers demonstrate the capability of parallelized ADCI to process thousands of samples for cytogenetic biodosimetry in a few hours. This increase in speed underscores the …