Physical Sciences and Mathematics Commons^™

The Last Best Hope: Are Voluntary Conservation Agreements Effective Tools For Protecting Imperiled Species?, Sophie B. Tsairis

Graduate Student Theses, Dissertations, & Professional Papers

Candidate Conservation Agreements with Assurances, or CCAAs, are little known, voluntary conservation agreements that protect imperiled wildlife on private lands. These agreements have emerged over the past decade and have had mixed results in providing adequate protections for candidate species.

Landowners, private industries, state and federal agencies, and environmental nonprofits, are using CCAAs as tools to eliminate the need for an endangered species listing. An Endangered Species Act listing can lead to land-use uncertainty for private landowners and this threat is the main incentive to enroll in a CCAA. When landowners enroll in CCAAs they are agreeing to provide specific …

Social Justice In Social-Ecological Systems: Resilience Through Stakeholder Engagement, Frederick I. Lauer

Graduate Student Theses, Dissertations, & Professional Papers

Successful management of social-ecological systems (SES) is predicated on quality collaborative exchanges between project stakeholders and management. The Southwest Crown of the Continent Collaborative (SWCC) Collaborative Forest Landscape Restoration Program (CFLRP) provided an opportunity to explore landscape scale collaborative management and SES outcomes. Global change and future uncertainty of landscapes prompted the SWCC to employ restoration treatment alternatives throughout 1.4 million acres of forests, most of which are publicly held. The SWCC currently monitors environmental and economic variables, with plans to monitor social variables. This thesis formalizes a proposed framework to investigate SES resilience, and explores public engagement as an …

K-Mer Analysis Pipeline For Classification Of Dna Sequences From Metagenomic Samples, Russell Kaehler

Graduate Student Theses, Dissertations, & Professional Papers

Biological sequence datasets are increasing at a prodigious rate. The volume of data in these datasets surpasses what is observed in many other fields of science. New developments wherein metagenomic DNA from complex bacterial communities is recovered and sequenced are producing a new kind of data known as metagenomic data, which is comprised of DNA fragments from many genomes. Developing a utility to analyze such metagenomic data and predict the sample class from which it originated has many possible implications for ecological and medical applications. Within this document is a description of a series of analytical techniques used to process …

Does Timing Of Herbicide Use Influence Rates Of Germination Or Seedling Biomass Of Native Plants Used For Restoration?, Christine Mcmanamen

Graduate Student Theses, Dissertations, & Professional Papers

Invasive plants can negatively impact native grasslands by changing their species composition, productivity, and function. Managers commonly use herbicides as a control method; however, this practice can lead to secondary invasion by other non-native invasive plants, unless measures are taken to promote natives. Because of this, managers often seed native plants after spraying herbicides. There is evidence, however, that chemical control of invasive plants may reduce the effectiveness of subsequent seed-addition treatments, but there is currently little quantitative information on optimal timing between spraying and seeding or on variation in herbicide sensitivity among native plants commonly used in seed mixes. …

The Influence Of Tree Height On Lidar’S Ability To Accurately Characterize Forest Structure And Spatial Pattern Across Reference Landscapes, Haley L. Wiggins

Graduate Student Theses, Dissertations, & Professional Papers

Successful restoration of degraded forest landscapes requires reference models that adequately capture structural heterogeneity at multiple spatial scales. Field-based methods for assessing variation in forest structure are costly and inherently suffer from limited replication and spatial coverage. LiDAR is a more cost-effective approach for generating landscape-scale data, but it has a limited ability to detect understory trees. Increased understanding of appropriate height cut-offs for trees to be reliably included in LiDAR-based analysis could improve applications of LiDAR to assessments of landscape-scale forest structure. Toward that end, I investigated the effect of varying tree-height criterion (minimum height cutoffs of 6, 9, …

A Miniaturized Spectrophotometric In Situ Ph Sensor For Seawater, Reuben C. Darlington

Graduate Student Theses, Dissertations, & Professional Papers

Since the Industrial Revolution, the world's oceans have absorbed increasing amounts of CO2 and the resultant changes to the marine carbonate chemical system have reduced the pH by > 0.1 units (~ 30%) in surface waters. This acidification of the oceans has many far reaching impacts on marine life and there is great need of quality instrumentation to assess and follow the changing carbonate system. This MIS project aims to develop a low cost pH sensor with high precision and accuracy for open sea measurements with special emphasis on reduced size and cost. Design effort is based on the commercially available …

Lateral Heterogeneity And Architectural Analysis Of The Wall Creek Member Of The Upper Cretaceous (Turonian) Frontier Formation, John Zupanic

Graduate Student Theses, Dissertations, & Professional Papers

The Upper Turonian Wall Creek Member (WCM) of the Frontier Formation is part of a series of marine sandstones that were deposited on the western flank of the Cretaceous Western Interior Seaway (KWIS). The KWIS was a low accommodation shallow-marine foreland basin system that included many large deltaic complexes on its western margin. Deposition of WCM deltaic deposits was strongly influenced by fourthorder glacioeustatic cycles, oceanographic circulation patterns, and tectonics related to the active Sevier fold and thrust belt to the west. An in-depth field study of the WCM was performed on the western flank of the Powder River Basin …

Comparing Changes In Fuel Loading, Tree Regeneration, And Forest Structure In Once- And Twice-Burned Mixed-Conifer Forests With A Before-After-Control-Impact Case Study In The Bob Marshall Wilderness, Wyatt W. Trull

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Wildfires drive landscape character in the seasonally dry mixed-conifer forests of western North America. Forested landscapes in this region are a mosaic of overlapping burn perimeters, which span a wide gradient of severity and burn age. The goal of this study was to compare the effects of single and repeat wildfires on fuel loading and forest structure and composition. Our study site spans the east and west sides of the South Fork of Flathead River in the Bob Marshall Wilderness. The east side of the river burned in 2000 in the Helen Creek Fire. The west side of the river …

Using Thermal Infrared Imagery To Estimate Soil Hydraulic Parameters: A Novel Approach, Matthew B. Thomas

Undergraduate Theses, Professional Papers, and Capstone Artifacts

In this study, skin temperature measured with a thermal infrared (TIR) camera was used to estimate soil hydraulic parameters. These physical properties that control how soils transport and retain water are notoriously difficult to measure in the field due to spatial variability. Laboratory experiments were set up to record surface skin temperature response in a clean soil column using a TIR camera after an artificial wetting event. An array of thermocouples, a net radiometer, heat flux sensor and weather station were used to constrain the TIR data and the energy budget during the experiment. The soil column surface was then …

Xic Clustering By Baseyian Network, Kyle J. Handy

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Mirage: A Novel Multiple Protein Sequence Alignment Tool, Alex Nord

Graduate Student Theses, Dissertations, & Professional Papers

A fundamental problem in computational biology is the organization of many related sequences into a multiple sequence alignment (MSA) [2]. MSAs have a range of research applications, such as inferring phylogeny [22] and identifying regions of conserved sequence that indicate functional similarity [18]. In the case of protein isoforms, MSAs are valuable tools for transitively annotating post-translational modifications (PTMs) by enabling information transfer between known PTM sites and the sites that they align to [11].

For protein MSA tools, one challenging biological phenomenon is alternative splicing, wherein identical genomic sequence will differentially select from a subset of available coding regions …

Structural Analysis Of A Triangle Zone Culmination, Comb Rock, Lewis And Clark County, Montana, Shane S. Fussell

Graduate Student Theses, Dissertations, & Professional Papers

A triangle zone is a structure commonly found at the leading edge of a thrust belt, characterized by a triangular cross-section of thrust faults. In the Montana triangle zone, west-dipping thrust faults intersect east-dipping ones above a regional detachment fault. Most studies of triangle zones focus on the structure in a cross-sectional sense, but little work addresses variations along the trend. The Canadian Rocky Mountain triangle zone has long been a productive petroleum province, so understanding the southern extent of this zone, where it enters Montana, is of interest for economic purposes as well as geologic understanding. Previous studies have …

Stream Restoration Effects On Hydraulic Exchange, Storage And Alluvial Aquifer Discharge, Christine M. Brissette

Graduate Student Theses, Dissertations, & Professional Papers

Stream restoration is increasingly being considered as a climate change mitigation tool, altering the storage and exchange capacities of streams and their adjacent alluvial aquifers. While previous research has shown that added geomorphic complexity and increased width-to-depth ratios can enhance hydraulic exchange and alluvial aquifer storage, few studies have used field data to link these changes in form to baseflow generation. In this paper, we quantify the effect of stream restoration on nested scales of hydraulic exchange and temporal patterns of alluvial aquifer recharge and discharge. Our work compares a restored and degraded reach on Ninemile Creek, Montana following extensive …

The Balancing Act: Ecological Interventions And Decision Tradeoffs To Preserve Wilderness Character, Lucy A. Lieberman

Graduate Student Theses, Dissertations, & Professional Papers

Global climate change, land use intensification and increasing development are impacting federal wildernesses in new and unprecedented ways. Ecological restoration is one tool that that wilderness managers are using to combat degradation, though the decision to intervene in wilderness is complicated by the Wilderness Act’s legal mandate to preserve wilderness character and demonstrate managerial restraint. The purpose of this study is to document a baseline of ecological interventions that have occurred in the NWPS over the last five years, and to understand how wilderness managers make decisions related to ecological interventions. I sent a quantitative survey to over five hundred …

Estimating The Effects Of Overstory Retention, Vegetative Competition, And Site Quality On The Height Growth Of Small Ponderosa Pine Trees Using Regression Quantiles, Colin P. Kirkmire

Graduate Student Theses, Dissertations, & Professional Papers

Ponderosa pine (Pinus ponderosa C. Lawson) forests in the Inland Northwestern region of the US are increasingly managed under multi-aged silvicultural systems that provide stand structure for wildlife habitat, timber production, enhanced aesthetic, or restoration of presettlement conditions (O'Hara 2005). Partial retention harvest, where an element of the previous stand's overstory structure is retained, is commonly used to achieve a multi-aged stand structure. However, little is known about how ponderosa pine trees in the understory respond to overstory and understory competitive factors following partial retention harvest. The height growth of small trees was hypothesized to be influenced by site …

Ponderosa Pine Responses To Biochar, Fertilizer, Or Mastication On The Bitterroot National Forest, Usa, Haley C. Anderson

Graduate Student Theses, Dissertations, & Professional Papers

Management and restoration practices in even-age ponderosa pine (Pinus ponderosa Lawson & C. Lawson) stands in the Intermountain West can be improved by developing a more thorough understanding of the effects of soil amendment treatments on tree growth and soil properties. Biochar is a charcoal- soil amendment that is created by burning woody biomass in an environment with limited oxygen through a process known as pyrolysis. Biochar has been recommended as a soil amendment for a number of reasons; including increased water and nutrient retention, and building soil aggregates. However, the effects of biochar on temperate forest soils and …

Fire Management Provisions In Federal Wilderness Law, Erik D. Alnes

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Response Of Amphibian And Invertebrate Communities To Wetland Mitigation In The Greater Yellowstone Ecosystem, Leah K. Swartz

Graduate Student Theses, Dissertations, & Professional Papers

Wetlands play a critical role in supporting freshwater biodiversity and ecosystem services, but human activities have resulted in large-scale loss and degradation of these habitats across the globe. To offset the decline of wetland area, mitigation wetlands are now frequently constructed, but their ability to replace the functions of natural habitats, including providing habitat for native fauna, remains uncertain. A recent highway reconstruction project in northwestern Wyoming caused impacts to and the destruction of multiple natural wetlands. To mitigate this loss, new wetlands were constructed along the highway corridor. To evaluate the performance of these created wetlands relative to reference …

Factors Influencing Cladophora Biomass Abundance In The Upper Clark Fork River, Montana., Nicholas J. Banish

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Detecting Regional Groundwater Discharge To The Clark Fork River, Melinda Horne

Undergraduate Theses, Professional Papers, and Capstone Artifacts

In this study, Radon-222 (²²²Rn) measured in stream water and groundwater was used to constrain the quantity of groundwater discharge along a 22 km reach of the Clark Fork River as it runs through Missoula, MT. Dissolved ²²²Rn samples were taken at 2 km intervals along a reach extending from the confluence of the Clark Fork and the Blackfoot River near Bonner, MT to the confluence with the Bitterroot River on the northwestern edge of the Missoula Valley. Groundwater samples were taken from wells in an alluvial aquifer near Rattlesnake Creek, and combined with previous data from …

Exploring Population Change Detection By Monitoring Effective Number Of Breeders, Brian Trethewey

Graduate Student Theses, Dissertations, & Professional Papers

Detecting if a population is in decline is an important objective for biologists and conservationists who are monitoring threatened populations. As genetic methods improve effective population size (N_e) and effective number of breeders (N_b) continue to gain popularity as a way to monitor species. Using simulated populations and linkage disequilibrium, we explored detecting population decline through N_b in age structured populations. Through comparisons of sensitivity (1 – false negatives) and specificity (1- false positives) over 1000 replicates, we explored how factors such as starting N_b, number of SNPs, number of individuals …

Longevity Of Ponderosa Pine Fuel Reduction Treatments: A Legacy Of Research At Lick Creek Demonstration/Research Forest In Western Montana, Katelynn J. Bowen

Graduate Student Theses, Dissertations, & Professional Papers

In ponderosa pine ecosystems of the interior western United States, fuels reduction treatments are common, but the persistence of their effectiveness in mitigating fire behavior is poorly understood. We addressed this problem by analyzing ponderosa pine – Douglas-fir stands during more than two decades of response following fuel reduction treatments. An experiment at the Lick Creek Demonstration/Research Forest in western Montana was initiated in 1991 as a partnership between the USDA Forest Service and the University of Montana to evaluate tradeoffs among alternative cutting and burning strategies to reduce fuels and forest fire behavior while restoring historical stand structures and …

Assessing Riparian Ecosystem Condition And Monitoring Recovery From Natural And Anthropogenic Disturbance, Rachel Powers

Graduate Student Theses, Dissertations, & Professional Papers

Riparian ecosystems are the transition zones between river systems and uplands. They provide many valuable ecological functions including creating habitat for wildlife, stabilizing banks from erosion and providing a buffer that prevents excess nutrients from entering streams. Fires and other disturbances alter the function of these ecosystems. Currently, there is a lack of broadly used standardized assessments and monitoring methods in riparian areas within our current water policy framework. This study aims to examine this gap in riparian ecosystem protection by reviewing the assessment methods currently in use, selecting one method for field testing, and analyzing the effort involved in …