Physical Sciences and Mathematics Commons^™

Automated Annotation Of Functional Imaging Experiments Via Multi-Label Classification, Matthew D. Turner, Chayan Chakrabarti, Thomas B. Jones, Jiawei F. Xu, Peter T. Fox, George F. Luger, Angela Laird, Jessica A. Turner

Department of Physics

Identifying the experimental methods in human neuroimaging papers is important for grouping meaningfully similar experiments for meta-analyses. Currently, this can only be done by human readers. We present the performance of common machine learning (text mining) methods applied to the problem of automatically classifying or labeling this literature. Labeling terms are from the Cognitive Paradigm Ontology (CogPO), the text corpora are abstracts of published functional neuroimaging papers, and the methods use the performance of a human expert as training data. We aim to replicate the expert's annotation of multiple labels per abstract identifying the experimental stimuli, cognitive paradigms, response types, …

Base Excision Repair Of Oxidative Dna Damage Coupled With Removal Of A Cag Repeat Hairpin Attenuates Trinucleotide Repeat Expansion, Meng Xu, Yanhao Lai, Justin Torner, Yanbin Zhang, Zunzhen Zhang, Yuan Liu

Department of Chemistry and Biochemistry

Trinucleotide repeat (TNR) expansion is responsible for numerous human neurodegenerative diseases. However, the underlying mechanisms remain unclear. Recent studies have shown that DNA base excision repair (BER) can mediate TNR expansion and deletion by removing base lesions in different locations of a TNR tract, indicating that BER can promote or prevent TNR expansion in a damage location–dependent manner. In this study, we provide the first evidence that the repair of a DNA base lesion located in the loop region of a CAG repeat hairpin can remove the hairpin, attenuating repeat expansion. We found that an 8-oxoguanine located in the loop …

Application Of Receiver Operating Characteristic (Roc) Curves For Explosives Detection Using Different Sampling And Detection Techniques, Mimy Young, Wen Fan, Anna Raeva, Jose Almirall

Department of Chemistry and Biochemistry

Reported for the first time are receiver operating characteristic (ROC) curves constructed to describe the performance of a sorbent-coated disk, planar solid phase microextraction (PSPME) unit for non-contact sampling of a variety of volatiles. The PSPME is coupled to ion mobility spectrometers (IMSs) for the detection of volatile chemical markers associated with the presence of smokeless powders, model systems of explosives containing diphenylamine (DPA), 2,4-dinitrotoluene (2,4-DNT) and nitroglycerin (NG) as the target analytes. The performance of the PSPME-IMS was compared with the widely accepted solid-phase microextraction (SPME), coupled to a GC-MS. A set of optimized sampling conditions for different volume …

Determination Of The Top-Quark Pole Mass And Strong Coupling Constant From The T T-Bar Production Cross Section In Pp Collisions At Sqrt(S) = 7 Tev, Cms Collaboration, Vanessa Gaultney, Samantha Hewamanage, Stephan Linn, Pete E. Markowitz, German Martinez, Jorge Luis Rodriguez

Department of Physics

The inclusive cross section for top-quark pair production measured by the CMS experiment in proton–proton collisions at a center-of-mass energy of 7 TeV is compared to the QCD prediction at next-to-next-to-leading order with various parton distribution functions to determine the top-quark pole mass, m[pole over t], or the strong coupling constant, α[subscript S]. With the parton distribution function set NNPDF2.3, a pole mass of 176.7[+3.8 over −3.4] GeV is obtained when constraining α[subscript S] at the scale of the Z boson mass, m[subscript Z], to the current world average. Alternatively, by constraining m[pole over t] to the latest average from …

Space-For-Time Substitution Works In Everglades Ecological Forecasting Models, Amanda I. Banet, Joel C. Trexler

Department of Biological Sciences

Space-for-time substitution is often used in predictive models because long-term time-series data are not available. Critics of this method suggest factors other than the target driver may affect ecosystem response and could vary spatially, producing misleading results. Monitoring data from the Florida Everglades were used to test whether spatial data can be substituted for temporal data in forecasting models. Spatial models that predicted bluefin killifish (Lucania goodei) population response to a drying event performed comparably and sometimes better than temporal models. Models worked best when results were not extrapolated beyond the range of variation encompassed by the original …

Recreational Angler Perspectives Of Nonnative Fish Species And Mercury Advisories, Christopher J. Edwards

FIU Electronic Theses and Dissertations

The central Everglades serve as a Wildlife Management Area and as a Water Conservation Area for the Miami-Fort Lauderdale metropolitan area. It is also home to over 22 nonnative freshwater fish species and carries restrictive fish consumption guidelines for Mercury. In my study, boat anglers and canal bank anglers were personally interviewed in the field, to research their awareness and perspectives of these potential environmental and health threats. The study found 78% of anglers were aware of the presence of nonnative fish species, but favored native fish species, and that 69% were aware of mercury advisories, but did not eat …

Improved Dynamic Headspace Sampling And Detection Using Capillary Microextraction Of Volatiles Coupled To Gas Chromatography Mass Spectrometry, Wen Fan

FIU Electronic Theses and Dissertations

Sampling and preconcentration techniques play a critical role in headspace analysis in analytical chemistry. My dissertation presents a novel sampling design, capillary microextraction of volatiles (CMV), that improves the preconcentration of volatiles and semivolatiles in a headspace with high throughput, near quantitative analysis, high recovery and unambiguous identification of compounds when coupled to mass spectrometry. The CMV devices use sol-gel polydimethylsiloxane (PDMS) coated microglass fibers as the sampling/preconcentration sorbent when these fibers are stacked into open-ended capillary tubes. The design allows for dynamic headspace sampling by connecting the device to a hand-held vacuum pump. The inexpensive device can be fitted …

Rapid Inline Derivatization Of Primary And Secondary Amine Containing Drugs By Capillary Electrophoresis With Laser-Induced Fluorescence, Britt E. Turnquest

FIU Electronic Theses and Dissertations

Despite the ongoing “war on drugs” the seizure rates for phenethylamines and their analogues have been steadily increasing over the years. The illicit manufacture of these compounds has become big business all over the world making it all the more attractive to the inexperienced “cook”. However, as a result, the samples produced are more susceptible to contamination with reactionary byproducts and leftover reagents. These impurities are useful in the analysis of seized drugs as their identities can help to determine the synthetic pathway used to make these drugs and thus, the provenance of these analytes. In the present work two …

Investigating The In Vitro Oxidative Folding Pathways Of Bovine Pancreatic Trypsin Inhibitor (Bpti), Yingsong Wang

FIU Electronic Theses and Dissertations

The oxidative folding pathway of the disulfide containing protein bovine pancreatic trypsin inhibitor (BPTI) was one of the first to be elucidated and has served as a basis for understanding the folding pathways of other proteins. During the oxidative folding of reduced BPTI, two intermediates (N' and N*) accumulate in significant amounts and act as kinetic traps. Both N' and N* bury their two remaining free thiols in their hydrophobic cores, which inhibits further oxidation. Historically, the rate limiting step was considered to be the intramolecular rearrangements of N' and N* to another intermediate with two free thiols, N^{SH …}

A Generalized Adaptive Mathematical Morphological Filter For Lidar Data, Zheng Cui

FIU Electronic Theses and Dissertations

Airborne Light Detection and Ranging (LIDAR) technology has become the primary method to derive high-resolution Digital Terrain Models (DTMs), which are essential for studying Earth’s surface processes, such as flooding and landslides. The critical step in generating a DTM is to separate ground and non-ground measurements in a voluminous point LIDAR dataset, using a filter, because the DTM is created by interpolating ground points. As one of widely used filtering methods, the progressive morphological (PM) filter has the advantages of classifying the LIDAR data at the point level, a linear computational complexity, and preserving the geometric shapes of terrain features. …

Statistical Models For Predicting College Success, Yelen Nunez

FIU Electronic Theses and Dissertations

Colleges base their admission decisions on a number of factors to determine which applicants have the potential to succeed. This study utilized data for students that graduated from Florida International University between 2006 and 2012. Two models were developed (one using SAT as the principal explanatory variable and the other using ACT as the principal explanatory variable) to predict college success, measured using the student’s college grade point average at graduation. Some of the other factors that were used to make these predictions were high school performance, socioeconomic status, major, gender, and ethnicity. The model using ACT had a higher …

Network Construction And Graph Theoretical Analysis Of Functional Language Networks In Pediatric Epilepsy, Anas Salah Eddin

FIU Electronic Theses and Dissertations

This dissertation introduces a new approach for assessing the effects of pediatric epilepsy on the language connectome. Two novel data-driven network construction approaches are presented. These methods rely on connecting different brain regions using either extent or intensity of language related activations as identified by independent component analysis of fMRI data. An auditory description decision task (ADDT) paradigm was used to activate the language network for 29 patients and 30 controls recruited from three major pediatric hospitals. Empirical evaluations illustrated that pediatric epilepsy can cause, or is associated with, a network efficiency reduction. Patients showed a propensity to inefficiently employ …

The Investigation Of Photocatalysts And Iron Based Materials In The Oxidation And The Adsorption Of Toxic Organic And Chromium Materials, Wenjun Jiang

FIU Electronic Theses and Dissertations

The presences of heavy metals, organic contaminants and natural toxins in natural water bodies pose a serious threat to the environment and the health of living organisms. Therefore, there is a critical need to identify sustainable and environmentally friendly water treatment processes. In this dissertation, I focus on the fundamental studies of advanced oxidation processes and magnetic nano-materials as promising new technologies for water treatments.

Advanced oxidation processes employ reactive oxygen species (ROS) which can lead to the mineralization of a number of pollutants and toxins. The rates of formation, steady-state concentrations, and kinetic parameters of hydroxyl radical and singlet …

Soil Building Processes In Reconstructed Tree Islands In The Everglades, Florida, Andres F. Rodriguez

FIU Electronic Theses and Dissertations

Soil building processes were studied in reconstructed tree islands in the Loxahatchee Impoundment Landscape Assessment, Florida. Soil building was evaluated by measuring litter production, litter decomposition, soil accretion, and changes in soil elevation under different hydrologic conditions, and by determining physicochemical characteristics of newly accreted soils. Tree islands showed higher litter production and soil accretion but a larger loss of soil elevation caused by subsidence at higher elevations and shorter inundation periods. Newly accreted soils exhibited higher nutrient concentrations, and organic matter (OM) than older soils. Most of the soil phosphorus was stored in the organic fraction. A positive correlation …

Elemental Analysis And Forensic Comparison Of Soils By Laser-Induced Breakdown Spectroscopy (Libs) And Laser Ablation Inductively Coupled Plasma Mass Spectrometry (La-Icp-Ms), Sarah C. Jantzi

FIU Electronic Theses and Dissertations

The elemental analysis of soil is useful in forensic and environmental sciences. Methods were developed and optimized for two laser-based multi-element analysis techniques: laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) and laser-induced breakdown spectroscopy (LIBS). This work represents the first use of a 266 nm laser for forensic soil analysis by LIBS.

Sample preparation methods were developed and optimized for a variety of sample types, including pellets for large bulk soil specimens (470 mg) and sediment-laden filters (47 mg), and tape-mounting for small transfer evidence specimens (10 mg). Analytical performance for sediment filter pellets and tape-mounted soils was similar …

Method Development For The Analysis Of Smokeless Powders And Organic Gunshot Residue By Ultra Performance Liquid Chromatography With Tandem Mass Spectrometry, Jennifer L. Thomas

FIU Electronic Theses and Dissertations

The goal of this project was to develop a rapid separation and detection method for analyzing organic compounds in smokeless powders and then test its applicability on gunshot residue (GSR) samples. In this project, a total of 20 common smokeless powder additives and their decomposition products were separated by ultra performance liquid chromatography (UPLC) and confirmed by tandem mass spectrometry (MS/MS) using multiple reaction monitoring mode (MRM). Some of the targeted compounds included diphenylamines, centralites, nitrotoluenes, nitroglycerin, and various phthalates. The compounds were ionized in the MS source using simultaneous positive and negative electrospray ionization (ESI) with negative atmospheric pressure …

Evaluation Of Non-Contact Sampling And Detection Of Explosives Using Receiver Operating Characteristic Curves, Mimy Young

FIU Electronic Theses and Dissertations

The growing need for fast sampling of explosives in high throughput areas has increased the demand for improved technology for the trace detection of illicit compounds. Detection of the volatiles associated with the presence of the illicit compounds offer a different approach for sensitive trace detection of these compounds without increasing the false positive alarm rate. This study evaluated the performance of non-contact sampling and detection systems using statistical analysis through the construction of Receiver Operating Characteristic (ROC) curves in real-world scenarios for the detection of volatiles in the headspace of smokeless powder, used as the model system for generalizing …

Geospatial Data Indexing Analysis And Visualization Via Web Services With Autonomic Resource Management, Yun Lu

FIU Electronic Theses and Dissertations

With the exponential growth of the usage of web-based map services, the web GIS application has become more and more popular. Spatial data index, search, analysis, visualization and the resource management of such services are becoming increasingly important to deliver user-desired Quality of Service.

First, spatial indexing is typically time-consuming and is not available to end-users. To address this, we introduce TerraFly sksOpen, an open-sourced an Online Indexing and Querying System for Big Geospatial Data. Integrated with the TerraFly Geospatial database [1-9], sksOpen is an efficient indexing and query engine for processing Top-k Spatial Boolean Queries. Further, we provide ergonomic …

The Utilization Of Chiral Ion Mobility Spectrometry For The Detection Of Enantiomeric Mixtures And Thermally Labile Compounds, Howard K. Holness

FIU Electronic Theses and Dissertations

This dissertation utilized electrospray ion mobility mass spectrometry (ESI-IMS-MS) to develop methods necessary for the separation of chiral compounds of forensic interest. The compounds separated included ephedrines and pseudoephedrines, that occur as impurities in confiscated amphetamine type substances (ATS) in an effort to determine the origin of these substances. The ESI-IMS-MS technique proved to be faster and more cost effective than traditional chromatographic methods currently used to conduct chiral separations such as gas and liquid chromatography. Both mass spectrometric and computational analysis revealed the separation mechanism of these chiral interactions allowing for further development to separate other chiral compounds by …

Development Of Effective Approaches To The Large-Scale Aerodynamic Testing Of Low-Rise Building, Tuan-Chun Fu

FIU Electronic Theses and Dissertations

Low-rise buildings are often subjected to high wind loads during hurricanes that lead to severe damage and cause water intrusion. It is therefore important to estimate accurate wind pressures for design purposes to reduce losses. Wind loads on low-rise buildings can differ significantly depending upon the laboratory in which they were measured. The differences are due in large part to inadequate simulations of the low-frequency content of atmospheric velocity fluctuations in the laboratory and to the small scale of the models used for the measurements. A new partial turbulence simulation methodology was developed for simulating the effect of low-frequency flow …

A Study On The Correlation Of Bivariate And Trivariate Normal Models, Maria Del Pilar Orjuela

FIU Electronic Theses and Dissertations

Suppose two or more variables are jointly normally distributed. If there is a common relationship between these variables it would be very important to quantify this relationship by a parameter called the correlation coefficient which measures its strength, and the use of it can develop an equation for predicting, and ultimately draw testable conclusion about the parent population.

This research focused on the correlation coefficient ρ for the bivariate and trivariate normal distribution when equal variances and equal covariances are considered. Particularly, we derived the maximum Likelihood Estimators (MLE) of the distribution parameters assuming all of them are unknown, and …

Extending Positive Class Results Across Multiple Instructors And Multiple Classes Of Modeling Instruction, Eric Brewe, Adrienne Traxler, Jorge De La Garza, Laird Kramer

Department of Physics

We report on a multiyear study of student attitudes measured with the Colorado Learning Attitudes about Science Survey in calculus-based introductory physics taught with the Modeling Instruction curriculum. We find that five of six instructors and eight of nine sections using Modeling Instruction showed significantly improved attitudes from pre- to postcourse. Cohen’s d effect sizes range from 0.08 to 0.95 for individual instructors. The average effect was d=0.45, with a 95% confidence interval of (0.26–0.64). These results build on previously published results showing positive shifts in attitudes from Modeling Instruction classes. We interpret these data in light of other published …

Adult Age-Dependent Differences In Resting-State Connectivity Within And Between Visual-Attention And Sensorimotor Networks, Christian Roski, Svenja Caspers, Robert Langner, Angela Laird, Peter Fox, Karl Zilles, Katrin Amunts, Simon Eichhoff

Department of Physics

Healthy aging is accompanied by structural and functional changes in the brain, among which a loss of neural specificity (i.e., dedifferentiation) is one of the most consistent findings. Little is known, however, about changes in interregional integration underlying a dedifferentiation across different functional systems. In a large sample (n = 399) of healthy adults aged from 18 to 85 years, we analyzed age-dependent differences in resting-state (RS) (task-independent) functional connectivity (FC) of a set of brain regions derived from a previous fMRI study. In that study, these regions had shown an age-related loss of activation specificity in visual-attention (superior …

Mobimed: Framework For Rapid Application Development Of Medical Mobile Apps, Frank Hernadez

FIU Electronic Theses and Dissertations

In the medical field images obtained from high definition cameras and other medical imaging systems are an integral part of medical diagnosis. The analysis of these images are usually performed by the physicians who sometimes need to spend long hours reviewing the images before they are able to come up with a diagnosis and then decide on the course of action. In this dissertation we present a framework for a computer-aided analysis of medical imagery via the use of an expert system. While this problem has been discussed before, we will consider a system based on mobile devices.

Since the …

Formation Of Polycyclic Aromatic Hydrocarbons And Nitrogen Containing Polcyclic Aromatic Compounds In Titan's Atmosphere, The Interstellar Medium And Combustion, Alexander Landera

FIU Electronic Theses and Dissertations

Several different mechanisms leading to the formation of (substituted) naphthalene and azanaphthalenes were examined using theoretical quantum chemical calculations. As a result, a series of novel synthetic routes to Polycyclic Aromatic Hydrocarbons (PAHs) and Nitrogen Containing Polycyclic Aromatic Compounds (N-PACs) have been proposed. On Earth, these aromatic compounds originate from incomplete combustion and are released into our environment, where they are known to be major pollutants, often with carcinogenic properties. In the atmosphere of a Saturn’s moon Titan, these PAH and N-PACs are believed to play a critical role in organic haze formation, as well as acting as chemical precursors …

Trajectory Privacy Preservation In Mobile Wireless Sensor Networks, Xinyu Jin

FIU Electronic Theses and Dissertations

In recent years, there has been an enormous growth of location-aware devices, such as GPS embedded cell phones, mobile sensors and radio-frequency identification tags. The age of combining sensing, processing and communication in one device, gives rise to a vast number of applications leading to endless possibilities and a realization of mobile Wireless Sensor Network (mWSN) applications. As computing, sensing and communication become more ubiquitous, trajectory privacy becomes a critical piece of information and an important factor for commercial success. While on the move, sensor nodes continuously transmit data streams of sensed values and spatiotemporal information, known as ``trajectory information". …

Factors That Affect The Physical Science Career Interest Of Female Students: Testing Five Common Hypotheses, Zahra Hazari, Geoff Potvin, Robynne M. Lock, Florin Lung, Gerhard Sonnert, Philip M. Sadler

Department of Teaching and Learning

There are many hypotheses regarding factors that may encourage female students to pursue careers in the physical sciences. Using multivariate matching methods on national data drawn from the Persistence Research in Science and Engineering (PRiSE) project (n=7505), we test the following five commonly held beliefs regarding what factors might impact females’ physical science career interest: (i) having a single-sex physics class, (ii) having a female physics teacher, (iii) having female scientist guest speakers in physics class, (iv) discussing the work of female scientists in physics class, and (v) discussing the underrepresentation of women in physics class. The effect of these …

Comprehensive Forensic Toxicological Analysis Of Designer Drugs, Madeleine Jean Swortwood

FIU Electronic Theses and Dissertations

New designer drugs are constantly emerging onto the illicit drug market and it is often difficult to validate and maintain comprehensive analytical methods for accurate detection of these compounds. Generally, toxicology laboratories utilize a screening method, such as immunoassay, for the presumptive identification of drugs of abuse. When a positive result occurs, confirmatory methods, such as gas chromatography (GC) or liquid chromatography (LC) coupled with mass spectrometry (MS), are required for more sensitive and specific analyses. In recent years, the need to study the activities of these compounds in screening assays as well as to develop confirmatory techniques to detect …

Tubular And Sector Heat Pipes With Interconnected Branches For Gas Turbine And/Or Compressor Cooling, Brian D. Reding Ii

FIU Electronic Theses and Dissertations

Designing turbines for either aerospace or power production is a daunting task for any heat transfer scientist or engineer. Turbine designers are continuously pursuing better ways to convert the stored chemical energy in the fuel into useful work with maximum efficiency. Based on thermodynamic principles, one way to improve thermal efficiency is to increase the turbine inlet pressure and temperature. Generally, the inlet temperature may exceed the capabilities of standard materials for safe and long-life operation of the turbine. Next generation propulsion systems, whether for new supersonic transport or for improving existing aviation transport, will require more aggressive cooling system …

The Utility Of Age-Specific Cut-Offs For Visual Rating Of Medial Temporal Atrophy In Classifying Alzheimer's Disease, Mci And Cognitively Normal Elderly Subjects, Ranjan Duara, David A. Loewenstein, Qian Shen, Warren Barker, Daniel Veron, Maria T. Greig, Rosie Curiel, Joscelyn Agron, Isael Santos, Huntington Potter

HWCOM Faculty Publications

Background: New research criteria for diagnosing Alzheimer's disease (AD) in the mild cognitive impairment stage (MCI-AD) incorporate biomarkers to assign a level of certainty to the diagnosis. Structural MRI is widely available but greatly under-utilized for assessing atrophy of structures affected in early AD, such as the hippocampus (HP), because the quantification of HP volumes (HP-v) requires special expertise, and normative values have not been established.

Methods: Elderly subjects (n = 273) from the Florida ADRC were classified as having no cognitive impairment (cognitively normal, CN), amnestic mild cognitive impairment (aMCI) or AD. Volumes for the hippocampus (HP-v) were …