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Physical Sciences and Mathematics Commons

Open Access. Powered by Scholars. Published by Universities.®

COBRA

2011

Efficiency; gene expression analysis; microarray; t-test

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Full-Text Articles in Physical Sciences and Mathematics

The Importance Of Statistical Theory In Outlier Detection, Sarah C. Emerson, Scott S. Emerson Aug 2011

The Importance Of Statistical Theory In Outlier Detection, Sarah C. Emerson, Scott S. Emerson

UW Biostatistics Working Paper Series

We explore the performance of the outlier-sum statistic (Tibshirani and Hastie, Biostatistics 2007 8:2--8), a proposed method for identifying genes for which only a subset of a group of samples or patients exhibits differential expression levels. Our discussion focuses on this method as an example of how inattention to standard statistical theory can lead to approaches that exhibit some serious drawbacks. In contrast to the results presented by those authors, when comparing this method to several variations of the $t$-test, we find that the proposed method offers little benefit even in the most idealized scenarios, and suffers from a number …