Physical Sciences and Mathematics Commons^™

Creating Data From Unstructured Text With Context Rule Assisted Machine Learning (Craml), Stephen Meisenbacher, Peter Norlander

School of Business: Faculty Publications and Other Works

Popular approaches to building data from unstructured text come with limitations, such as scalability, interpretability, replicability, and real-world applicability. These can be overcome with Context Rule Assisted Machine Learning (CRAML), a method and no-code suite of software tools that builds structured, labeled datasets which are accurate and reproducible. CRAML enables domain experts to access uncommon constructs within a document corpus in a low-resource, transparent, and flexible manner. CRAML produces document-level datasets for quantitative research and makes qualitative classification schemes scalable over large volumes of text. We demonstrate that the method is useful for bibliographic analysis, transparent analysis of proprietary data, …

A Hybrid Artificial Intelligence Model For Detecting Keratoconus, Zaid Abdi Alkareem Alyasseri, Ali H. Al-Timemy, Ammar Kamal Abasi, Alexandru Lavric, Husam Jasim Mohammed, Hidenori Takahashi, Jose Arthur Milhomens Filho, Mauro Campos, Rossen M. Hazarbassanov, Siamak Yousefi

Machine Learning Faculty Publications

Machine learning models have recently provided great promise in diagnosis of several ophthalmic disorders, including keratoconus (KCN). Keratoconus, a noninflammatory ectatic corneal disorder characterized by progressive cornea thinning, is challenging to detect as signs may be subtle. Several machine learning models have been proposed to detect KCN, however most of the models are supervised and thus require large well-annotated data. This paper proposes a new unsupervised model to detect KCN, based on adapted flower pollination algorithm (FPA) and the k-means algorithm. We will evaluate the proposed models using corneal data collected from 5430 eyes at different stages of KCN severity …

Pyseg: A Python Package For 2d Material Flake Localization, Segmentation, And Thickness Prediction, Diana B. Horangic

Student Research Projects

Thin materials are of interest for their extraordinary physical, mechanical, thermal, electrical, and optical properties. Monolayers and bilayers of 2D materials can be manufactured through a variety of exfoliation methods. To determine layer thickness, Raman spectroscopy or other methods like Rayleigh scattering are used. These methods are, however, slow, and they require equipment beyond an optical microscope. A Python package that automates flake identification processes was built, with access solely to RGB data from an optical microscope assumed. My package, pyseg, localizes flakes on a substrate and then makes a rough estimate of their thickness from first principles. It can …

Predictors Of Covid-19 Vaccination Rate In Usa: A Machine Learning Approach, Syed M. I. Osman, Ahmed Sabit

WCBT Faculty Publications

In this study, we examine state-level features and policies that are most important in achieving a threshold level vaccination rate to curve the effects of the COVID-19 pandemic. We employ CHAID, a decision tree algorithm, on three different model specifications to answer this question based on a dataset that includes all the states in the United States. Workplace travel emerges as the most important predictor; however, the governors’ political affiliation (PA) replaces it in a more conservative feature set that includes economic features and the growth rate of COVID-19 cases. We also employ several alternative algorithms as a robustness check. …

Towards A Machine Learning-Based Digital Twin For Non-Invasive Human Bio-Signal Fusion, Izaldein Al-Zyoud, Fedwa Laamarti, Xiaocong Ma, Diana Tobón, Abdulmotaleb Elsaddik

Computer Vision Faculty Publications

Human bio-signal fusion is considered a critical technological solution that needs to be advanced to enable modern and secure digital health and well-being applications in the metaverse. To support such efforts, we propose a new data-driven digital twin (DT) system to fuse three human physiological bio-signals: heart rate (HR), breathing rate (BR), and blood oxygen saturation level (SpO2). To accomplish this goal, we design a computer vision technology based on the non-invasive photoplethysmography (PPG) technique to extract raw time-series bio-signal data from facial video frames. Then, we implement machine learning (ML) technology to model and measure the bio-signals. We accurately …

The Interaction Of Normalisation And Clustering In Sub-Domain Definition For Multi-Source Transfer Learning Based Time Series Anomaly Detection, Matthew Nicholson, Rahul Agrahari, Clare Conran, Haythem Assem, John D. Kelleher

Articles

This paper examines how data normalisation and clustering interact in the definition of sub-domains within multi-source transfer learning systems for time series anomaly detection. The paper introduces a distinction between (i) clustering as a primary/direct method for anomaly detection, and (ii) clustering as a method for identifying sub-domains within the source or target datasets. Reporting the results of three sets of experiments, we find that normalisation after feature extraction and before clustering results in the best performance for anomaly detection. Interestingly, we find that in the multi-source transfer learning scenario clustering on the target dataset and identifying subdomains in the …

Predicting The Outcomes Of Internet-Based Cognitive Behavioral Therapy For Tinnitus: Applications Of Artificial Neural Network And Support Vector Machine, Hansapani Rodrigo, Eldré W. Beukes, Gerhard Andersson, Vinaya Manchaiah

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

Purpose:

Internet-based cognitive behavioral therapy (ICBT) has been found to be effective for tinnitus management, although there is limited understanding about who will benefit the most from ICBT. Traditional statistical models have largely failed to identify the nonlinear associations and hence find strong predictors of success with ICBT. This study aimed at examining the use of an artificial neural network (ANN) and support vector machine (SVM) to identify variables associated with treatment success in ICBT for tinnitus.

Method:

The study involved a secondary analysis of data from 228 individuals who had completed ICBT in previous intervention studies. A 13-point reduction …

Predicting Publication Of Clinical Trials Using Structured And Unstructured Data: Model Development And Validation Study, Siyang Wang, Simon Šuster, Timothy Baldwin, Karin Verspoor

Natural Language Processing Faculty Publications

Background: Publication of registered clinical trials is a critical step in the timely dissemination of trial findings. However, a significant proportion of completed clinical trials are never published, motivating the need to analyze the factors behind success or failure to publish. This could inform study design, help regulatory decision-making, and improve resource allocation. It could also enhance our understanding of bias in the publication of trials and publication trends based on the research direction or strength of the findings. Although the publication of clinical trials has been addressed in several descriptive studies at an aggregate level, there is a lack …

The Role Of Radiomics And Ai Technologies In The Segmentation, Detection, And Management Of Hepatocellular Carcinoma, Dalia Fahmy, Ahmed Alksas, Ahmed Elnakib, Ali Mahmoud, Heba Kandil, Ashraf Khalil, Mohammed Ghazal, Eric Van Bogaert, Sohail Contractor, Ayman El-Baz

All Works

Hepatocellular carcinoma (HCC) is the most common primary hepatic neoplasm. Thanks to recent advances in computed tomography (CT) and magnetic resonance imaging (MRI), there is potential to improve detection, segmentation, discrimination from HCC mimics, and monitoring of therapeutic response. Radiomics, artificial intelligence (AI), and derived tools have already been applied in other areas of diagnostic imaging with promising results. In this review, we briefly discuss the current clinical applications of radiomics and AI in the detection, segmentation, and management of HCC. Moreover, we investigate their potential to reach a more accurate diagnosis of HCC and to guide proper treatment planning.

Towards Reinterpreting Neural Topic Models Via Composite Activations, Jia Peng Lim, Hady Wirawan Lauw

Research Collection School Of Computing and Information Systems

Most Neural Topic Models (NTM) use a variational auto-encoder framework producing K topics limited to the size of the encoder’s output. These topics are interpreted through the selection of the top activated words via the weights or reconstructed vector of the decoder that are directly connected to each neuron. In this paper, we present a model-free two-stage process to reinterpret NTM and derive further insights on the state of the trained model. Firstly, building on the original information from a trained NTM, we generate a pool of potential candidate “composite topics” by exploiting possible co-occurrences within the original set of …

Understanding Sentiment Through Context, Richard M.Crowley, M.H. Franco Wong

Research Collection School Of Accountancy

We examine whether empirical results using text-based sentiment of U.S. annual reports depend on the underlying context, within documents, from which sentiment is measured. We construct a clause-level measure of context, showing that sentiment is driven by many different contexts and that positive and negative sentiment are driven by different contexts. We then construct context-level sentiment measures and examine whether sentiment works as expected at the context-level across four prediction problems. Our results demonstrate that document-level sentiment exhibits significant noise in prediction and suggest that document-level aggregation of sentiment leads to missed empirical nuances. The contexts driving sentiment results vary …

Rapid Detection Of Recurrent Non-Muscle Invasive Bladder Cancer In Urine Using Atr-Ftir Technology, Abdullah I. El-Falouji, Dalia M. Sabri, Naira M. Lofti, Doaa M. Medany, Samar A. Mohamed, Mai Alaa-Eldin, Amr Mounir Selim, Asmaa A. El Leithy, Haitham F. Kalil, Ahmed El-Tobgy, Ahmed Mohamed

Chemistry Faculty Publications

Non-muscle Invasive Bladder Cancer (NMIBC) accounts for 80% of all bladder cancers. Although it is mostly low-grade tumors, its high recurrence rate necessitates three-times-monthly follow-ups and cystoscopy examinations to detect and prevent its progression. A rapid liquid biopsy-based assay is needed to improve detection and reduce complications from invasive cystoscopy. Here, we present a rapid spectroscopic method to detect the recurrence of NMIBC in urine. Urine samples from previously-diagnosed NMIBC patients (n = 62) were collected during their follow-up visits before cystoscopy examination. Cystoscopy results were recorded (41 cancer-free and 21 recurrence) and attenuated total refraction Fourier transform infrared (ATR-FTIR) …

Enhanced Heart Rate Prediction Model Using Damped Least-Squares Algorithm, Angela An, Mohammad Al-Fawa’Reh, James Jin Kang

Research outputs 2022 to 2026

Monitoring a patient’s vital signs is considered one of the most challenging problems in telehealth systems, especially when patients reside in remote locations. Companies now use IoT devices such as wearable devices to participate in telehealth systems. However, the steady adoption of wearables can result in a significant increase in the volume of data being collected and transmitted. As these devices run on limited battery power, they can run out of power quickly due to the high processing requirements of the device for data collection and transmission. Given the importance of medical data, it is imperative that all transmitted data …

A Review Of Risk Concepts And Models For Predicting The Risk Of Primary Stroke, Elizabeth Hunter, John D. Kelleher

Articles

Predicting an individual's risk of primary stroke is an important tool that can help to lower the burden of stroke for both the individual and society. There are a number of risk models and risk scores in existence but no review or classification designed to help the reader better understand how models differ and the reasoning behind these differences. In this paper we review the existing literature on primary stroke risk prediction models. From our literature review we identify key similarities and differences in the existing models. We find that models can differ in a number of ways, including the …

An Empirical Study Of Artifacts And Security Risks In The Pre-Trained Model Supply Chain, Wenxin Jiang, Nicholas Synovic, Rohan Sethi, Aryan Indarapu, Matt Hyattt, Taylor R. Schorlemmer, George K. Thiruvathukal, James C. Davis

Computer Science: Faculty Publications and Other Works

Deep neural networks achieve state-of-the-art performance on many tasks, but require increasingly complex architectures and costly training procedures. Engineers can reduce costs by reusing a pre-trained model (PTM) and fine-tuning it for their own tasks. To facilitate software reuse, engineers collaborate around model hubs, collections of PTMs and datasets organized by problem domain. Although model hubs are now comparable in popularity and size to other software ecosystems, the associated PTM supply chain has not yet been examined from a software engineering perspective.

We present an empirical study of artifacts and security features in 8 model hubs. We indicate the potential …

Open-Source Clinical Machine Learning Models: Critical Appraisal Of Feasibility, Advantages, And Challenges, Keerthi B. Harish, W. Nicholson Price Ii, Yindalon Aphinyanaphongs

Articles

Machine learning applications promise to augment clinical capabilities and at least 64 models have already been approved by the US Food and Drug Administration. These tools are developed, shared, and used in an environment in which regulations and market forces remain immature. An important consideration when evaluating this environment is the introduction of open-source solutions in which innovations are freely shared; such solutions have long been a facet of digital culture. We discuss the feasibility and implications of open-source machine learning in a health care infrastructure built upon proprietary information. The decreased cost of development as compared to drugs and …

Design Of Secure Communication Schemes To Provide Authentication And Integrity Among The Iot Devices, Vidya Rao Dr.

Technical Collection

The fast growth in Internet-of-Things (IoT) based applications, has increased the number of end-devices communicating over the Internet. The end devices are made with fewer resources and are low battery-powered. These resource-constrained devices are exposed to various security and privacy concerns over publicly available Internet communication. Thus, it becomes essential to provide lightweight security solutions to safeguard data and user privacy. Elliptic Curve Cryptography (ECC) can be used to generate the digital signature and also encrypt the data. The method can be evaluated on a real-time testbed deployed using Raspberry Pi3 devices and every message transmitted is subjected to ECC. …

Application Of Machine Learning And Cyber Security In Smart Grid, Soham Dutta Dr.

Technical Collection

Unplanned islanding of microgrids is a major hindrance in providing continuous power supply to the critical loads. The detection of these islanding instants needs to be very fast so that the distributed generators (DG) are able to take control actions in minimum time. Due to high quality data at a rapid rate, micro phasor measurement unit (μ-PMU) are becoming widely popular in distribution system and micro grids. These μ-PMUs can be leveraged for island detection. However, the working of μ-PMU is hugely dependent on communication network for data transmission which is prone to cyber-attacks. In view of the above facts, …

Investigating Bloom's Cognitive Skills In Foundation And Advanced Programming Courses From Students' Discussions, Joel Jer Wei Lim, Gottipati Swapna, Kyong Jin Shim

Research Collection School Of Computing and Information Systems

Programming courses provide students with the skills to develop complex business applications. Teaching and learning programming is challenging, and collaborative learning is proposed to help with this challenge. Online discussion forums promote networking with other learners such that they can build knowledge collaboratively. It aids students open their horizons of thought processes to acquire cognitive skills. Cognitive analysis of discussion is critical to understand students' learning process. In this paper, we propose Bloom's taxonomy based cognitive model for programming discussion forums. We present machine learning (ML) based solution to extract students' cognitive skills. Our evaluations on compupting courses show that …

Generating Realistic Cyber Data For Training And Evaluating Machine Learning Classifiers For Network Intrusion Detection Systems, Marc W. Chalé, Nathaniel D. Bastian

Faculty Publications

No abstract provided.

From Machine Learning To Deep Learning: A Comprehensive Study Of Alcohol And Drug Use Disorder, Banafsheh Rekabdar, David L. Albright, Haelim Jeong, Sameerah Talafha

Computer Science Faculty Publications and Presentations

This study aims to train and validate machine learning and deep learning models to identify patients with risky alcohol and drug misuse in a Screening, Brief Intervention, and Referral to Treatment (SBIRT) program. An observational cohort of 6978 adults was admitted in the western region of Alabama at three medical facilities between January and December of 2019. Data were cleaned and pre-processed using data imputation techniques and an augmented sampling data method. The primary analysis involved the multi-class classification of alcohol and drug misuse. Our study shows that accurate identification of alcohol and drug use screening instrument scores was best …

Emotion Quantification Using Variational Quantum State Fidelity Estimation, Jaiteg Singh, Farman Ali, Babar Shah, Kamalpreet Singh Bhangu, Daehan Kwak

All Works

Sentiment analysis has been instrumental in developing artificial intelligence when applied to various domains. However, most sentiments and emotions are temporal and often exist in a complex manner. Several emotions can be experienced at the same time. Instead of recognizing only categorical information about emotions, there is a need to understand and quantify the intensity of emotions. The proposed research intends to investigate a quantum-inspired approach for quantifying emotional intensities in runtime. The inspiration comes from manifesting human cognition and decision-making capabilities, which may adopt a brief explanation through quantum theory. Quantum state fidelity was used to characterize states and …

Improving Protein Succinylation Sites Prediction Using Embeddings From Protein Language Model, Suresh Pokharel, Pawel Pratyush, Michael Heinzinger, Robert H. Newman, Dukka Kc

Michigan Tech Publications

Protein succinylation is an important post-translational modification (PTM) responsible for many vital metabolic activities in cells, including cellular respiration, regulation, and repair. Here, we present a novel approach that combines features from supervised word embedding with embedding from a protein language model called ProtT5-XL-UniRef50 (hereafter termed, ProtT5) in a deep learning framework to predict protein succinylation sites. To our knowledge, this is one of the first attempts to employ embedding from a pre-trained protein language model to predict protein succinylation sites. The proposed model, dubbed LMSuccSite, achieves state-of-the-art results compared to existing methods, with performance scores of 0.36, 0.79, 0.79 …

An Approach For Improved Students’ Performance Prediction Using Homogeneous And Heterogeneous Ensemble Methods, Edmund Evangelista, Benedict Sy

All Works

Web-based learning technologies of educational institutions store a massive amount of interaction data which can be helpful to predict students’ performance through the aid of machine learning algorithms. With this, various researchers focused on studying ensemble learning methods as it is known to improve the predictive accuracy of traditional classification algorithms. This study proposed an approach for enhancing the performance prediction of different single classification algorithms by using them as base classifiers of homogeneous ensembles (bagging and boosting) and heterogeneous ensembles (voting and stacking). The model utilized various single classifiers such as multilayer perceptron or neural networks (NN), random forest …

Shell Theory: A Statistical Model Of Reality, Wen-Yan Lin, Siying Liu, Changhao Ren, Ngai-Man Cheung, Hongdong Li, Yasuyuki Matsushita

Research Collection School Of Computing and Information Systems

Machine learning's grand ambition is the mathematical modeling of reality. The recent years have seen major advances using deep-learned techniques that model reality implicitly; however, corresponding advances in explicit mathematical models have been noticeably lacking. We believe this dichotomy is rooted in the limitations of the current statistical tools, which struggle to make sense of the high dimensional generative processes that natural data seems to originate from. This paper proposes a new, distance based statistical technique which allows us to develop elegant mathematical models of such generative processes. Our model suggests that each semantic concept has an associated distinctive-shell which …

Right To Know, Right To Refuse: Towards Ui Perception-Based Automated Fine-Grained Permission Controls For Android Apps, Vikas Kumar Malviya, Chee Wei Leow, Ashok Kasthuri, Naing Tun Yan, Lwin Khin Shar, Lingxiao Jiang

Research Collection School Of Computing and Information Systems

It is the basic right of a user to know how the permissions are used within the Android app’s scope and to refuse the app if granted permissions are used for the activities other than specified use which can amount to malicious behavior. This paper proposes an approach and a vision to automatically model the permissions necessary for Android apps from users’ perspective and enable fine-grained permission controls by users, thus facilitating users in making more well-informed and flexible permission decisions for different app functionalities, which in turn improve the security and data privacy of the App and enforce apps …

Predicting The Level Of Respiratory Support In Covid-19 Patients Using Machine Learning, Hisham Abdeltawab, Fahmi Khalifa, Yaser Elnakieb, Ahmed Elnakib, Fatma Taher, Norah Saleh Alghamdi, Harpal Singh Sandhu, Ayman El-Baz

All Works

In this paper, a machine learning-based system for the prediction of the required level of respiratory support in COVID-19 patients is proposed. The level of respiratory support is divided into three classes: class 0 which refers to minimal support, class 1 which refers to non-invasive support, and class 2 which refers to invasive support. A two-stage classification system is built. First, the classification between class 0 and others is performed. Then, the classification between class 1 and class 2 is performed. The system is built using a dataset collected retrospectively from 3491 patients admitted to tertiary care hospitals at the …

A Simpler Machine Learning Model For Acute Kidney Injury Risk Stratification In Hospitalized Patients, Yirui Hu, Kunpeng Liu, Kevin Ho, David Riviello, Jason Brown, Alex R. Chang, Gurmukteshwar Singh, H. Lester Kirchner

Computer Science Faculty Publications and Presentations

Background: Hospitalization-associated acute kidney injury (AKI), affecting one-in-five inpatients, is associated with increased mortality and major adverse cardiac/kidney endpoints. Early AKI risk stratification may enable closer monitoring and prevention. Given the complexity and resource utilization of existing machine learning models, we aimed to develop a simpler prediction model. Methods: Models were trained and validated to predict risk of AKI using electronic health record (EHR) data available at 24 h of inpatient admission. Input variables included demographics, laboratory values, medications, and comorbidities. Missing values were imputed using multiple imputation by chained equations. Results: 26,410 of 209,300 (12.6%) inpatients developed AKI during …

Evaluation Of Machine Learning Algorithm On Drinking Water Quality For Better Sustainability, Sanaa Kaddoura

All Works

Water has become intricately linked to the United Nations' sixteen sustainable development goals. Access to clean drinking water is crucial for health, a fundamental human right, and a component of successful health protection policies. Clean water is a significant health and development issue on a national, regional, and local level. Investments in water supply and sanitation have been shown to produce a net economic advantage in some areas because they reduce adverse health effects and medical expenses more than they cost to implement. However, numerous pollutants are affecting the quality of drinking water. This study evaluates the efficiency of using …

Using Deep Learning To Detect Social Media ‘Trolls’, Áine Macdermott, Michal Motylinski, Farkhund Iqbal, Kellyann Stamp, Mohammed Hussain, Andrew Marrington

All Works

Detecting criminal activity online is not a new concept but how it can occur is changing. Technology and the influx of social media applications and platforms has a vital part to play in this changing landscape. As such, we observe an increasing problem with cyber abuse and ‘trolling’/toxicity amongst social media platforms sharing stories, posts, memes sharing content. In this paper we present our work into the application of deep learning techniques for the detection of ‘trolls’ and toxic content shared on social media platforms. We propose a machine learning solution for the detection of toxic images based on embedded …