Physical Sciences and Mathematics Commons^™

Pathway Pioneer: A Web-Based Metabolic Network Layout Extension, Harsh Dosi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The number and complexity of genome-scale metabolic networks have seen a rapid growth in the past 10 years. Today, more than 450 genome-scale metabolic reconstructions of biological systems are characterized and existing models are extended. With the growing influence of these reconstructions on biomedical and biological research, the field has observed a shift from an inward focus on method development to an outward focus on application development.

Static state analysis of metabolic networks in textual format is too cumbersome and time consuming. In addition, visualization and arrangement of these networks to facilitate their analysis is an open research problem. A …

Creating An Electronic Analog Of A Stomatal Network, David Berg

Physics Capstone Projects

Stomata are microscopic variable aperture pores on the surfaces of leaves. In response to different environmental stimuli, they control the exchange rate of both water vapor and carbon dioxide between the air and the leaf interior, making their role an important determination of the status of plant life on Earth. This study is based on a recently developed stomatal model in which the aperture size is governed by vapor phase humidity. The study describes an electronic analog of the stomatal unit; in it, current models water flow, a transistor represents the variable resistance of the stomatal aperture, capacitor voltages represent …