Physical Sciences and Mathematics Commons^™

Seasonal Resource Selection And Habitat Treatment Use By A Fringe Population Of Greater Sage-Grouse, Rhett Boswell

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Movement and habitat selection by Greater Sage-grouse (Centrocercus uropasianus) is of great interest to wildlife managers tasked with applying conservation measures for this iconic western species. Current technology has created small and lightweight GPS (Global Positioning Systems) transmitters that can be attached to sage-grouse. Using GIS software and statistical programs such as Program R, land managers can analyze GPS location data to assess how sage-grouse are geospatially interacting with their habitats. Within the Panguitch Sage-Grouse Management Area (SGMA) thousands of acres of land have been restored or manipulated to enhance sage-grouse habitat; this usually involves removal of pinyon pine …

The Investigation Of Gravity Waves In The Mesosphere / Lower Thermosphere And Their Effect On Sporadic Sodium Layer, Xuguang Cai

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Gravity waves in the atmosphere are the waves with gravity and buoyancy force as the restoring forces. Gravity waves will significantly impact the Mesosphere Lower / Thermosphere (MLT), and the breaking of gravity waves is the key factor to cause the cool summer and warm winter in the Mesopause region. Therefore, it is important for us to investigate gravity waves. In this dissertation, we mainly use USU Na lidar data to explore gravity waves in the MLT. The exploration is made up of two projects. One is the investigation of gravity wave breaking and the associated dynamic instability by USU …

Approaches, Techniques, And Tools For Identifying Important Code Changes To Help Code Reviewers, Maneesh M. Mohanavilasam

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Software development is a collaborative process where many developers come together and work on a project. To make things easy and manageable, software is developed on a version control system. A version control system is a centralized system which stores code and adds code from all other developers as an increment to the code base in the repository. Since multiple people work on the same code repository together, it is important to make sure that their contributions do not conflict with each other. It is important to maintain the quality and integrity of the repository. This is where the code …

Extensions And Improvements To Random Forests For Classification, Anna Quach

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The motivation of my dissertation is to improve two weaknesses of Random Forests. One, the failure to detect genetic interactions between two single nucleotide polymorphisms (SNPs) in higher dimensions when the interacting SNPs both have weak main effects and two, the difficulty of interpretation in comparison to parametric methods such as logistic regression, linear discriminant analysis, and linear regression.

We focus on detecting pairwise SNP interactions in genome case-control studies. We determine the best parameter settings to optimize the detection of SNP interactions and improve the efficiency of Random Forests and present an efficient filtering method. The filtering method is …

Stream Temperature Monitoring And Modeling To Inform Restoration: A Study Of Thermal Variability In The Western Us, Jessica R. Wood

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Water temperature is an important variable for aquatic ecosystems. Salmonid population numbers and distribution are heavily influenced by stream temperature, and there is growing concern about the health of salmonid populations with anticipated climate change. Managers are looking to efficiently evaluate options to maintain stream temperatures needed by salmonids. This study evaluated and compared stream temperature restoration alternatives in two streams with warm temperatures using stream temperature monitoring and modeling.

The first study identified pockets of cold water that are important to native fish species in Nevada’s Walker River. Comparison of monitoring results with existing basin-scale model outputs identified two …

Optimizing Bioengineered Vascular Systems: A Genetic Algorithm Approach, Sima Mehri Kochaki

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Efficiency of current cell cultures producing biological products is limited due to accumulation of the product and waste on the cells. A previous work aims at assisting bioengineers in solving this problem by introducing a new set of cells which possess the ability to connect to one another and thus form a network. Once created, the network of cells can help the initial cellules by removing their waste and product as well as nourishing them. Our project explores a technique to be able to create the best network of such cells; hence maximizing the amount of metabolic product in the …

Mechanistic Studies Of The Iron And Molybdenum Nitrogenases, Derek Harris

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As a basic building block in many biological molecules the element nitrogen (N) is essential for life. Dinitrogen (N2) is abundant in Earth’s atmosphere, but this form is biologically unavailable. To be biologically available N2 must undergo an energy demanding reduction reaction to the fixed form, ammonia (NH3). The industrial Haber-Bosch process, which accounts for approximately 50% of the worlds fixed nitrogen, uses energy from fossil fuels to achieve high pressures and temperatures to facilitate the reaction. The energy used by Haber-Bosch accounts for approximately 2% of the world’s annual supply. The remainder of fixed nitrogen is produced biologically by …

Rancher Perceptions Of Ecosystem Services From Rangelands Of The Intermountain West, Elisabeth C. York

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Rangelands within the Great Basin are responsible for the provision of multiple resources that humans depend on for a variety of reasons. Ranchers in this region are dependent on public lands to remain economically viable in their cattle operations. As a majority of land in this region is publically owned, there are varying interests at play in what should and could be the focus of management. Ranchers are charged with implementing strategies aimed at conserving these landscapes and their motivations for what to manage may significantly influence resource provision from Intermountain West ecosystem.

In this study, I sought to understand …

Novel Statistical Models For Quantitative Shape-Gene Association Selection, Xiaotian Dai

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Other research reported that genetic mechanism plays a major role in the development process of biological shapes. The primary goal of this dissertation is to develop novel statistical models to investigate the quantitative relationships between biological shapes and genetic variants. However, these problems can be extremely challenging to traditional statistical models for a number of reasons: 1) the biological phenotypes cannot be effectively represented by single-valued traits, while traditional regression only handles one dependent variable; 2) in real-life genetic data, the number of candidate genes to be investigated is extremely large, and the signal-to-noise ratio of candidate genes is expected …

Non-Methane Hydrocarbon Source Apportionment And Btex Risk Assessment Of Winter 2015 In Roosevelt, Utah, Jerimiah Lamb

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Non-Methane Hydrocarbons (NMHC) monitored in Roosevelt Utah including Benzene, Toluene, Ethylbenzene and Xylene (collectively known as BTEX) are associated with deleterious effects including cancer. This study was designed to assess the origin and effect of the toxicants and addressed two points: 1) Source identification using the USEPA’s Positive Matrix Factorization (PMF) and NOAA’s Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT) model and 2) A human health risk assessment based on ambient concentrations of BTEX collected at the Roosevelt site. Model fit indicated that the primary contributor to total NMHCs was local oil and gas operations and was supported by previous …

Longitudinal Thermal And Solute Dynamics In Regulated Rivers, Muhammad Rezaul Haider

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Dam releases increase river stage and can reverse groundwater movement into and out of the river. As the flood, thermal, and solute waves travel downstream in a regulated river, the size of the waves is anticipated to be affected both by river processes and exchanges with near river groundwater. This study established a modeling framework to quantify the influences of the groundwater exchanges on the temperatures and solute concentration dynamics along regulated rivers. The wave properties, volume of exchanges, conservative solute mass exchanges, and heat energy exchanges were calculated as a function of time and distance downstream. Results show that …

Extracting And Visualizing Data From Mobile And Static Eye Trackers In R And Matlab, Chunyang Li

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Eye tracking is the process of measuring where people are looking at with an eye tracker device. Eye tracking has been used in many scientific fields, such as education, usability research, sports, psychology, and marketing. Eye tracking data are often obtained from a static eye tracker or are manually extracted from a mobile eye tracker. Visualization usually plays an important role in the analysis of eye tracking data. So far, there existed no software package that contains a whole collection of eye tracking data processing and visualization tools. In this dissertation, we review the eye tracking technology, the eye tracking …

Optimizing Barrier Removal To Restore Connectivity In Utah’S Weber Basin, Maggi Kraft

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

River barriers, such as dams, culverts and diversions are important for water conveyance, but disrupt river ecosystems and hydrologic processes. River barrier removal is increasingly used to restore and improve river habitat and connectivity. Most past barrier removal projects prioritized individual barriers using score-and-rank techniques, neglecting the spatial structure and cumulative change from multiple barrier removals. Similarly, most water demand models satisfy human water uses or, only prioritize aquatic habitat, failing to include both human and environmental water use benefits. In this study, a dual objective optimization model identified in-stream barriers that impede quality-weighted aquatic habitat connectivity for Bonneville cutthroat …

Twentieth Century Channel Change Of The Green River In Canyonlands National Park, Utah, Alexander E. Walker

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Since the early 20^th century, river channels of the Colorado River basin have narrowed, decreasing available riparian and aquatic habitat. Changes are considered to be the result of three major factors: wide-spread water development, increasing hydroclimate variability and the invasion of non-native tamarisk (Tamarix spp.), altering flow regime and sediment supply. Different studies have reached different conclusions about the relative roles of flow regime, sediment supply and tamarisk in causing narrowing.

I investigated channel change in the lower Green River within Canyonlands National Park to describe channel changes in the 20^th century and understand the roles …

Exact Approaches For Bias Detection And Avoidance With Small, Sparse, Or Correlated Categorical Data, Sarah E. Schwartz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Every day, traditional statistical methodology are used world wide to study a variety of topics and provides insight regarding countless subjects. Each technique is based on a distinct set of assumptions to ensure valid results. Additionally, many statistical approaches rely on large sample behavior and may collapse or degenerate in the presence of small, spare, or correlated data. This dissertation details several advancements to detect these conditions, avoid their consequences, and analyze data in a different way to yield trustworthy results.

One of the most commonly used modeling techniques for outcomes with only two possible categorical values (eg. live/die, pass/fail, …

Geological Characterization Of Precambrian Nonconformities: Implications For Injection-Induced Seismicity In The Midcontinent United States, Laura Cuccio

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The midcontinent United States, a region which typically does not experience many earthquakes, has experienced a significant increase in the number of earthquakes over the last decade. This increase in earthquake activity has been linked to wastewater injection, a process in which large volumes of wastewater from oil and gas extraction are injected into deep (2-3 km), high-permeability sedimentary rocks, near low-permeability Precambrian (>540-million-year-old) crystalline ‘basement’ rocks. The contact between these two rock types is referred to as the Precambrian nonconformity. Injection-induced earthquakes occur on or near basement-hosted faults due to an increase in pore fluid pressures, which implies …

Exploring And Describing The Spatial And Temporal Dynamics Of Medusahead In The Channeled Scablands Of Eastern Washington Using Remote Sensing Techniques, Timothy M. Bateman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Medusahead is a harmful weed that is invading public lands in the West. The invasion is a serious concern to the public because it can reduce forage for livestock and wildlife, increase fire frequency, alter important ecosystem cycles (like water), reduce recreational activities, and produce landscapes that are aesthetically unpleasing. Invasions can drive up costs that generally require taxpayer’s dollars. Medusahead seedlings typically spread to new areas by attaching itself to passing objects (e.g. vehicles, animals, clothing) where it can quickly begin to affect plants communities. To be effective, management plans need to be sustainable, informed, and considerate to invasion …

Real Simple Lie Algebras: Cartan Subalgebras, Cayley Transforms, And Classification, Hannah M. Lewis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The differential geometry software package in Maple has the necessary tools and commands to automate the classification process for complex simple Lie algebras. The purpose of this thesis is to write the programs to complete the classification for real simple Lie algebras. This classification is difficult because the Cartan subalgebras are not all conjugate as they are in the complex case. For the process of the real classification, one must first identify a maximally noncompact Cartan subalgebra. The process of the Cayley transform is used to find this specific Cartan subalgebra. This Cartan subalgebra is used to find the simple …

Usarray Imaging Of North American Continental Crust, Xiaofei Ma

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The layered structure and bulk composition of continental crust contains important clues about its history of mountain-building, about its magmatic evolution, and about dynamical processes that continue to happen now. Geophysical and geological features such as gravity anomalies, surface topography, lithospheric strength and the deformation that drives the earthquake cycle are all directly related to deep crustal chemistry and the movement of materials through the crust that alter that chemistry.

The North American continental crust records billions of years of history of tectonic and dynamical changes. The western U.S. is currently experiencing a diverse array of dynamical processes including modification …

Application Of Machine Learning And Statistical Learning Methods For Prediction In A Large-Scale Vegetation Map, Carla M. Brookey

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Original analyses of a large vegetation cover dataset from Roosevelt National Forest in northern Colorado were carried out by Blackard (1998) and Blackard and Dean (1998; 2000). They compared the classification accuracies of linear and quadratic discriminant analysis (LDA and QDA) with artificial neural networks (ANN) and obtained an overall classification accuracy of 70.58% for a tuned ANN compared to 58.38% for LDA and 52.76% for QDA.

Because there has been tremendous development of machine learning classification methods over the last 35 years in both computer science and statistics, as well as substantial improvements in the speed of computer hardware, …

Imputation For Random Forests, Joshua Young

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This project introduces two new methods for imputation of missing data in random forests. The new methods are compared against other frequently used imputation methods, including those used in the randomForest package in R. To test the effectiveness of these methods, missing data are imputed into datasets that contain two missing data mechanisms including missing at random and missing completely at random. After imputation, random forests are run on the data and accuracies for the predictions are obtained. Speed is an important aspect in computing; the speeds for all the tested methods are also compared.

One of the new methods …

Tree-Based Regression For Interval-Valued Data, Chih-Ching Yeh

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Regression methods for interval-valued data have been increasingly studied in recent years. As most of the existing works focus on linear models, it is important to note that many problems in practice are nonlinear in nature and therefore development of nonlinear regression tools for intervalvalued data is crucial. In this project, we propose a tree-based regression method for interval-valued data, which is well applicable to both linear and nonlinear problems. Unlike linear regression models that usually require additional constraints to ensure positivity of the predicted interval length, the proposed method estimates the regression function in a nonparametric way, so the …

The Dynamic Relationship Between The Bear River, Quaternary Basaltic Center, Normal Faults, And The Resulting Rearrangement Of Rivers In The Northeast Edge Of The Great Basin, Southeast Idaho, Brady Utley

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The objective of this research project in Gem Valley graben, southeast Idaho is to identify the location, age and history of the Quaternary diversion of the Bear River into paleo-Lake Thatcher, and then into the Lake Bonneville basin from the Columbia River basin. Mapping, geochemical analysis, cross-cutting relationships, and five new age determinations, together with prior published research, shed new light on the complex history of interaction between the volcanic rocks, rivers, lakes, and faults in Gem Valley. Research goals were to test the hypothesis that local faulting and volcanism drove the diversion of the Bear River and controlled the …

Efficiently Representing The Integer Factorization Problem Using Binary Decision Diagrams, David Skidmore

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Let p be a prime positive integer and let α be a positive integer greater than 1. A method is given to reduce the problem of finding a nontrivial factorization of α to the problem of finding a solution to a system of modulo p polynomial congruences where each variable in the system is constrained to the set {0,...,p − 1}. In the case that p = 2 it is shown that each polynomial in the system can be represented by an ordered binary decision diagram with size less than 20.25log₂(α)³ + 16.5log₂(α)² + …

Stratigraphy, Petrology, And Paleontology Of The Late Cretaceous Campanian Mesaverde Group In Northeastern Utah, Christopher Ward

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This project examines a poorly studied sandstone ridge called Snake John Reef located 22 miles southeast of Vernal, in northeastern Utah. Previously this ridge was mapped as exposures of late Cretaceous, undifferentiated Mesaverde Group, and recently unidentified dinosaur fossils have been found along the ridge by the Utah Field House of Natural History State Park Museum. Stratigraphic sections, petrographic thin sections, and collection and study of fossils from Snake John Reef were undertaken to understand the stratigraphic relationship as well as to reconstruct the depositional environment of the dinosaur bearing units. Snake John Reef represents exposures of three late Cretaceous …

Estimating Accuracy Of Personal Identifiable Information In Integrated Data Systems, Amani "Mohammad Jum'h" Amin Shatnawi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Both government agencies and private companies rely on the collection of personal data on an ever-increasing scale. Out of necessity, person data include Personal Identifiable Information (PII), which is information that could potentially identify a specific individual. Many of these data would be integrated, so data analyst, policy makers or corporate officers can use it to make decisions or get a conclusion. Integrating data in a heterogeneous database environment create a need to estimate the accuracy of that data; without a valid assessment of accuracy there is a risk of coming with incorrect conclusions or making bad decision based on …

Stratigraphy Of The Middle Cambrian Lincoln Peak Formation And Evolution Of The House Range Embayment, Eastern Nevada, Ibrahim Zallum

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This study examined the Middle Cambrian (c. 500 MA) Lincoln Peak Formation and Patterson Pass Shale. The initial goal was to create a stratigraphic model for these units. This model was then compared to those from already studied units in western Utah, which combined with the Nevada units form the rock record of an ancient feature known as the House Range Embayment, which was an area of greater water depth superimposed on the continental shelf. This study found that the Nevada units exhibit a series of depositional sequences similar to those in western Utah, but at a lower resolution. This …

Visualization And 3d Printing Of A 3d Solar Tracker Model Using Mayavi And Pov-Ray, Aditya Mehra

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

In this work, we have created a realistic model of a solar tracker using Mayavi: 3D scientific data visualization and plotting in Python, Enthought Canopy:a comprehensive Python analysis environment and Persistence of Vision Ray Tracer, or POV-Ray, a ray tracing program which generates photo-realistic images from a text-based scene description, a model of the solar tracker was also 3D printed.

Prediction Of Stress Increase In Unbonded Tendons Using Sparse Principal Component Analysis, Eric Mckinney

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

While internal and external unbonded tendons are widely utilized in concrete structures, the analytic solution for the increase in unbonded tendon stress, Δ���, is challenging due to the lack of bond between strand and concrete. Moreover, most analysis methods do not provide high correlation due to the limited available test data. In this thesis, Principal Component Analysis (PCA), and Sparse Principal Component Analysis (SPCA) are employed on different sets of candidate variables, amongst the material and sectional properties from the database compiled by Maguire et al. [18]. Predictions of Δ��� are made via Principal Component Regression models, and the method …

Neutro-Connectedness Theory, Algorithms And Applications, Min Xian

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Connectedness plays an important role in human cognitive and learning activities. Human vision system is very sensitive to the connectedness property of objects and effective in "calculating" the property. The study of connectedness will help us explore the way of human brain extracting the global properties of objects, and enable different avenues to design new artificial intelligent (AI) systems with better performances.

However, connectedness is rarely considered in current AI systems because of the lack of complete theoretic system and efficient computation algorithm. In this work, I focus on building the connectedness theory and algorithms in digital space, and apply …