Physical Sciences and Mathematics Commons^™

Ueb Parallel: Distributed Snow Accumulation And Melt Modeling Using Parallel Computing, Tseganeh Z. Gichamo, David G. Tarboton

Publications

The Utah Energy Balance (UEB) model supports gridded simulation of snow processes over a watershed. To enhance computational efficiency, we developed two parallel versions of the model, one using the Message Passing Interface (MPI) and the other using NVIDIA's CUDA code on Graphics Processing Unit (GPU). Evaluation of the speed-up and efficiency of the MPI version shows that the effect of input/output (IO) operations on the parallel model performance increases as the number of processor cores increases. As a result, although the computation kernel scales well with the number of cores, the efficiency of the parallel code as a whole …

Climate Diagnostics Of The Extreme Floods In Peru During Early 2017, Rackhun Son, Shih-Yu Simon Wang, Wan-Ling Tseng, Christian W. Barreto Schuler, Emily Becker, Jin-Ho Yoon

Plants, Soils, and Climate Faculty Publications

From January through March 2017, a series of extreme precipitation events occurred in coastal Peru, causing severe floods with hundreds of human casualties and billions of dollars in economic losses. The extreme precipitation was a result of unusually strong recurrent patterns of atmospheric and oceanic conditions, including extremely warm coastal sea surface temperatures (SST) and weakened trade winds. These climatic features and their causal relationship with the Peruvian precipitation were examined. Diagnostic analysis and model experiments suggest that an atmospheric forcing in early 2017, which was moderately linked to the Trans-Niño Index (TNI), initiated the local SST warming along coastal …

Evidence For Accelerated Weathering And Sulfate Export In High Alpine Environments, John T. Crawford, Eve-Lyn S. Hinckley, M. Iggy Litaor, Janice Brahney, Jason C. Neff

Watershed Sciences Faculty Publications

High elevation alpine ecosystems—the 'water towers of the world'—provide water for human populations around the globe. Active geomorphic features such as glaciers and permafrost leave alpine ecosystems susceptible to changes in climate which could also lead to changing biogeochemistry and water quality. Here, we synthesize recent changes in high-elevation stream chemistry from multiple sites that demonstrate a consistent and widespread pattern of increasing sulfate and base cation concentrations or fluxes. This trend has occurred over the past 30 years and is consistent across multiple sites in the Rocky Mountains of the United States, western Canada, the European Alps, the Icelandic …

A 100-M-Scale Modeling Study Of A Gale Event On The Lee Side Of A Long Narrow Mountain, Halie Xue, Jian Li, Tingting Qian, Hongping Gu

Plants, Soils, and Climate Faculty Publications

In this study, a gale event that occurred on the lee side of a long narrow mountain was investigated, together with the associated mountain flows, using a realistic-case large-eddy simulation (LES) that is based on the Weather Research and Forecasting Model. The mountain is located on the southeastern Tibetan Plateau, where approximately 58 gales occur annually, mostly in the afternoons during the winter season. Benefitting from realistic topography and high horizontal resolution as fine as 111 m, the LES can replicate features similar to the wind fields observed during the gale period. Investigation of the early morning wind structure over …

Data-Driven Multiscale Modeling Reveals The Role Of Metabolic Coupling For The Spatio-Temporal Growth Dynamics Of Yeast Colonies, Jukka Intosalmi, Adrian C. Scott, Michelle Hays, Nicholas Flann, Olli Yli-Harja, Harri Lähdesmäki, Aimée M. Dudley, Alexander Skupin

Computer Science Faculty and Staff Publications

Background: Multicellular entities like mammalian tissues or microbial biofilms typically exhibit complex spatial arrangements that are adapted to their specific functions or environments. These structures result from intercellular signaling as well as from the interaction with the environment that allow cells of the same genotype to differentiate into well-organized communities of diversified cells. Despite its importance, our understanding how this cell–cell and metabolic coupling lead to functionally optimized structures is still limited.

Results: Here, we present a data-driven spatial framework to computationally investigate the development of yeast colonies as such a multicellular structure in dependence on metabolic capacity. For this …

Exploratory Measurements Of Large Winds And Shears In The Lower Thermosphere And Their Variability Using An Enhanced Sodium Lidar, Tao Yuan

Funded Research Records

No abstract provided.

Resurgence Of An Apex Marine Predator And The Decline In Prey Body Size, Jan Ohlberger, Daniel E. Schindler, Eric J. Ward, Timothy E. Walsworth, Timothy E. Essington

Watershed Sciences Faculty Publications

In light of recent recoveries of marine mammal populations worldwide and heightened concern about their impacts on marine food webs and global fisheries, it has become increasingly important to understand the potential impacts of large marine mammal predators on prey populations and their life-history traits. In coastal waters of the northeast Pacific Ocean, marine mammals have increased in abundance over the past 40 to 50 y, including fish-eating killer whales that feed primarily on Chinook salmon. Chinook salmon, a species of high cultural and economic value, have exhibited marked declines in average size and age throughout most of their North …

Beavers Alter Stream Macroinvertebrate Communities In Northeastern Utah, Susan E. Washko, Brett B. Roper, Trisha Brooke Atwood

Watershed Sciences Faculty Publications

1. Understanding changes in macroinvertebrate communities is important because they play a large role in stream ecosystem functioning, and they are an important food resource for fish. Beaver‐induced changes to stream morphology could alter macroinvertebrate communities, which in turn could affect food webs and ecosystem function. However, studies investigating the effects of North American beaver activities on macroinvertebrates are rare in the inter‐mountain west, an area with high potential for beaver‐assisted restoration.
2. The aim of this study was to quantify differences in the macroinvertebrate community between unaltered segments of streams and within beaver ponds in north‐eastern Utah, U.S.A. We assessed macroinvertebrate …

Normalized Multi-Bump Solutions For Saturable Schrödinger Equations, Xiaoming Wang, Zhi-Qiang Wang

Mathematics and Statistics Faculty Publications

In this paper, we are concerned with the existence of multi-bump solutions for a class of semiclassical saturable Schrödinger equations with an density function:

We prove that, with the density function being radially symmetric, for given integer k ≥ 2 there exist a family of non-radial, k-bump type normalized solutions (i.e., with the L² constraint) which concentrate at the global maximum points of density functions when ε → 0⁺. The proof is based on a variational method in particular on a convexity technique and the concentration-compactness method.

Coordination Of Anions By Noncovalently Bonded Σ-Hole Ligands, Steve Scheiner, Mariusz Michalczyk, Wiktor Zierkiewicz

Chemistry and Biochemistry Faculty Publications

Research on σ-hole interactions that include halogen, chalcogen, pnicogen, and tetrel bonding has been accelerating in recent years. These cousins of the H-bond have many similar properties, including geometric preferences and energetics. Most of the work to date has focused on neutral complexes, with less known about these bonds to anions. This review summarizes the current state of knowledge about the complexes of anions with ligands that engage in these sorts of noncovalent bonds. Of particular interest are comparisons with H-bonds, and how the geometry of the fully coordinated complex varies as the number of surrounding ligands increases. A specific …

North American Winter Dipole: Observed And Simulated Changes In Circulations, Yu-Tang Chien, Shih-Yu (Simon) Wang, Yoshimitsu Chikamoto, Steve L. Voelker, Jonathan D.D. Meyer, Jin-Ho Yoon

Plants, Soils, and Climate Faculty Publications

In recent years, a pair of large-scale circulation patterns consisting of an anomalous ridge over northwestern North America and trough over northeastern North America was found to accompany extreme winter weather events such as the 2013–2015 California drought and eastern U.S. cold outbreaks. Referred to as the North American winter dipole (NAWD), previous studies have found both a marked natural variability and a warming-induced amplification trend in the NAWD. In this study, we utilized multiple global reanalysis datasets and existing climate model simulations to examine the variability of the winter planetary wave patterns over North America and to better understand …

Relaxation Of Radiation Effects In Polymers, Alexandra Hughlett Nelson

Physics Capstone Projects

Radiation can create atomic-scale defect states in polymers, leading to changes in their optical, electrical and mechanical properties. Recent studies of polymers have shown that these defect states are sensitive to oxygen or water exposure. It is believed that oxygen cause the number of defect states to decrease and the polymers to revert to their original states. However, the time scale of this regression is not known. This experiment quantified the time that it takes five polymers to recover and the extent of said recovery; polypropylene (PP), low density polyethylene (LDPE), fluorinated ethylene propylene (FEP), polymide (PI), and poly ether …

Model‐Based Properties Of The Dayside Open/Closed Boundary: Is There A Ut‐Dependent Variation?, David A. Smith, Jan Josef Sojka

All Physics Faculty Publications

The open‐closed boundary (OCB) defines a region of significant transformation in Earth's protective magnetic shield. Principle among these changes is the transition of magnetic field lines from having two foot points, one in each hemisphere, to one foot point at Earth, the other mapping to the solar wind. Charged particles in the solar wind are able to follow these open field lines into Earth's upper atmosphere. The OCB also defines the polar cap boundary. Being able to identify and track the OCB allows study of several components of the geomagnetic system. Among them are the electrodynamics of the geomagnetic field …

Decomposing The Hamiltonian Of Quantum Circuits Using Machine Learning, Jordan Burns, Yih Sung, Colby Wight

Physics Capstone Projects

Quantum computing is one of the most promising techniques for simulating physical systems that cannot be simulated on classical computers[1]. A significant drawback of this approach is the inherent difficulty in designing circuits that can represent these systems on quantum computers. Every quantum circuit is built out of small components called quantum gates. Each of these gates manipulate the quantum system in a specific way. When used in combination, a finite subset of these gates, the set of universal gates, can be used to construct any possible quantum circuit[2].

Halving Iso(7) Supergravity, Adolfo Guarino, Javier Tarrío, Oscar J. Varela

All Physics Faculty Publications

Half-maximal, N = 4, sectors of D = 4 N = 8 supergravity with a dyonic ISO(7) gauging are investigated. We focus on a half-maximal sector including three vector multiplets, that arises as a certain SO(3)_R-invariant sector of the full theory. We discuss the embedding of this sector into the largest half-maximal sector of the N = 8 supergravity retaining six vector multiplets. We also provide its canonical N = 4 formulation and show that, from this perspective, our model leads in its own right to a new explicit gauging of N = 4 supergravity. Finally, expressions for …

Convergence Rates For Empirical Estimation Of Binary Classification Bounds, Salimeh Yasaei Sekeh, Morteza Noshad, Kevin R. Moon, Alfred O. Hero

Mathematics and Statistics Faculty Publications

Bounding the best achievable error probability for binary classification problems is relevant to many applications including machine learning, signal processing, and information theory. Many bounds on the Bayes binary classification error rate depend on information divergences between the pair of class distributions. Recently, the Henze–Penrose (HP) divergence has been proposed for bounding classification error probability. We consider the problem of empirically estimating the HP-divergence from random samples. We derive a bound on the convergence rate for the Friedman–Rafsky (FR) estimator of the HP-divergence, which is related to a multivariate runs statistic for testing between two distributions. The FR estimator is …

Sampling Methods For Luminescence Dating Of Subsurface Deposits From Cores, Michelle Nelson, Tammy M. Rittenour, Harriet Cornachione

Geosciences Faculty Publications

Study of subsurface deposits often requires coring or drilling to obtain samples for sedimentologic and geochemical analysis. Geochronology is a critical piece of information for stratigraphic correlation and rate calculations. Increasingly, luminescence dating is applied to sediment cores to obtain depositional ages. This paper provides examples and discussion of guidelines for sampling sediment core for luminescence dating. Preferred protocols are dependent on the extraction method, sedimentology, core integrity, and storage conditions. The methods discussed include subsampling of sediment in opaque core-liners, cores without liners, previously open (split) cores, bucket auger samples, and cuttings, under red lighting conditions. Two important factors …

An Updated Review Of Atmospheric Mercury, Seth N. Lyman, Irene Cheng, Lynne E. Gratz, Peter Weiss-Penzias, Leiming Zhang

Chemistry and Biochemistry Faculty Publications

The atmosphere is a key component of the biogeochemical cycle of mercury, acting as a reservoir, transport mechanism, and facilitator of chemical reactions. The chemical and physical behavior of atmospheric mercury determines how, when, and where emitted mercury pollution impacts ecosystems. In this review, we provide current information about what is known and what remains uncertain regarding mercury in the atmosphere. We discuss new ambient, laboratory, and theoretical information about the chemistry of mercury in various atmospheric media. We review what is known about mercury in and on solid- and liquid-phase aerosols. We present recent findings related to wet and …

Postmagmatic Tectonic Evolution Of The Outer Izu‐Bonin Forearc Revealed By Sediment Basin Structure And Vein Microstructure Analysis: Implications For A 15 Ma Hiatus Between Pacific Plate Subduction Initiation And Forearc Extension, Walter Kurz, Peter Micheuz, Gail L. Christeson, M. Reagan, John W. Shervais, Steffen Kutterolf, A. Robertson, Kurt Krenn, K. Michibayashi, D. Quandt

Geosciences Faculty Publications

International Ocean Discovery Program Expedition 352 recovered sedimentary‐volcaniclastic successions and extensional structures (faults and extensional veins) that allow the reconstruction of the Izu‐Bonin forearc tectonic evolution using a combination of shipboard core data, seismic reflection images, and calcite vein microstructure analysis. The oldest recorded biostratigraphic ages within fault‐bounded sedimentary basins (Late Eocene to Early Oligocene) imply a ~15 Ma hiatus between the formation of the igneous basement (52 to 50 Ma) and the onset of sedimentation. At the upslope sites (U1439 and U1442) extension led to the formation of asymmetric basins reflecting regional stretch of ~16–19% at strain rates of …

Feasibility Of Multi-Year Forecast For The Colorado River Water Supply: Time Series Modeling, Brian Plucinski, Yan Sun, Shih-Yu (Simon) Wang, Robert R. Gilies, James Eklund, Chih-Chia Wang

Mathematics and Statistics Faculty Publications

The future of the Colorado River water supply (WS) affects millions of people and the US economy. A recent study suggested a cross-basin correlation between the Colorado River and its neighboring Great Salt Lake (GSL). Following that study, the feasibility of using the previously developed multi-year prediction of the GSL water level to forecast the Colorado River WS was tested. Time-series models were developed to predict the changes in WS out to 10 years. Regressive methods and the GSL water level data were used for the depiction of decadal variability of the Colorado River WS. Various time-series models suggest a …

Retrieval Of Intrinsic Mesospheric Gravity Wave Parameters Using Lidar And Airglow Temperature And Meteor Radar Wind Data, Robert Reichert, Bernd Kaifler, Natalie Kaifler, Markus Rapp, Pierre-Dominique Pautet, Michael J. Taylor, Alexander Kozlovsky, Mark Lester, Rigel Kivi

Publications

We analyse gravity waves in the upper-mesosphere, lower-thermosphere region from high-resolution temperature variations measured by the Rayleigh lidar and OH temperature mapper. From this combination of instruments, aided by meteor radar wind data, the full set of ground-relative and intrinsic gravity wave parameters are derived by means of the novel WAPITI (Wavelet Analysis and Phase line IdenTIfication) method. This WAPITI tool decomposes the gravity wave field into its spectral component while preserving the temporal resolution, allowing us to identify and study the evolution of gravity wave packets in the varying backgrounds. We describe WAPITI and demonstrate its capabilities for the …

The Hydrogen Bond: A Hundred Years And Counting, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Since its original inception, a great deal has been learned about the nature, properties, and applications of the H-bond. This review summarizes some of the unexpected paths that inquiry into this phenomenon has taken researchers. The transfer of the bridging proton from one molecule to another can occur not only in the ground electronic state, but in various excited states as well. Study of the latter process has developed insights into the relationships between the nature of the state, the strength of the H-bond, and the height of the transfer barrier. The enormous broadening of the range of atoms that …

Evidence For Large Holocene Earthquakes Along The Denali Fault In Southwest Yukon, Canada, Andrée Blais-Stevens, John J. Clague, Janice Brahney, Panya Lipovsky, Peter J. Haeussler, Brian Menounos

Watershed Sciences Faculty Publications

The Yukon–Alaska Highway corridor in southern Yukon is subject to geohazards ranging from landslides to floods and earthquakes on faults in the St. Elias Mountains and Shakwak Valley. Here we discuss the late Holocene seismic history of the Denali fault, located at the eastern front of the St. Elias Mountains and one of only a few known seismically active terrestrial faults in Canada. Holocene faulting is indicated by scarps and mounds on late Pleistocene drift and by tectonically deformed Pleistocene and Holocene sediments. Previous work on trenches excavated against the fault scarp near the Duke River reveals paleoseismic sediment disturbance …

Structures And Energetics Of Clusters Surrounding Diatomic Anions Stabilized By Hydrogen, Halogen, And Other Noncovalent Bonds, Steve Scheiner, Mariusz Michalczyk, Rafal Wysokiński, Wiktor Zierkiewicz

Chemistry and Biochemistry Faculty Publications

Diatomic anions CN-, NO-, and OH- are surrounded by 2, 3, and 4 ligand molecules drawn from the HF, HCl, XF, YF2, ZF3, TF4, and TrF3 set wherein X= Cl,Br, Y=S,Se, Z=P,As, T=Si,Ge, and Tr=Al,Ga. In the case of two ligands, both interact with the N of NO- and the O of OH-, but one approaches either end of CN-. Unlike the H and halogen bonding units, as the number of ligands increases there is a tendency for chalcogen, pnicogen, tetrel, and triel-bonding ligands to form a cage around the central anion, with strong inter-ligand noncovalent bonds. There are a …

Aerial And Ground-Based Optical Gas Imaging Survey Of Uinta Basin Oil And Gas Wells, Seth N. Lyman, Trang Tran, Marc L. Mansfield, Arvind P. Ravikumar

Bingham Research Center

We deployed a helicopter with an infrared optical gas imaging camera to detect hydrocarbon emissions from 3,428 oil and gas facilities (including 3,225 producing oil and gas well pads) in Utah’s Uinta Basin during winter and spring 2018. We also surveyed 419 of the same well pads from the ground. Winter conditions led to poor contrast between emission plumes and the ground, leading to a detection limit for the aerial survey that was between two and six times worse than a previous summertime survey. Because the ground survey was able to use the camera’s high-sensitivity mode, the rate of detected …

Melissa: System Description And Spectral Features Of Pre- And Post-Midnight F-Region Echoes, Fabiano S. Rodrigues, Weijia Zhan, Marco A. Milla, B. G. Fejer, Eurico R. De Paula, Acacio C. Neto, Angela M. Santos, Inez S. Batista

All Physics Faculty Publications

Most of the low‐latitude ionospheric radar observations in South America come from the Jicamarca Radio Observatory, located in the western longitude sector (∼75°W). The deployment of the 30 MHz FAPESP‐Clemson‐INPE (FCI) coherent backscatter radar in the magnetic equatorial site of São Luis, Brazil, in 2001 allowed observations to be made in the eastern sector (∼45°W). However, despite being operational for several years (2001–2012), FCI only made observations during daytime and pre‐midnight hours, with a few exceptions. Here, we describe an upgraded system that replaced the FCI radar and present results of full‐night F‐region observations. This radar is referred to …

An Efficient Viologen-Based Electron Donor To Nitrogenase, Artavazd Badalyan, Zhi-Yong Yang, Bo Hu, Jian Luo, Maowei Hu, T. Leo Liu, Lance C. Seefeldt

Chemistry and Biochemistry Faculty Publications

Nitrogenase catalyzes the reduction of N₂ to NH₃, supporting all biological nitrogen fixation. Electron donors to this enzyme are ferredoxin or flavodoxin (in vivo) and sodium dithionite (in vitro). Features of these electron donors put a limit on spectrophotometric studies and electrocatalytic applications of nitrogenase. Although it is common to use methyl viologen as an electron donor for many low-potential oxidoreductases, decreased nitrogenase activity is observed with an increasing concentration of methyl viologen, limiting its utility under many circumstances. In this work, we suggest that this concentration-dependent decrease in activity can be explained …

The Total Syntheses Of Jbir-94 And Two Synthetic Analogs And Their Cytotoxicities Against A549 (Ccl-185) Human Small Lung Cancer Cells, Cathy L. Mangum, Mica B. Munford, Alyssa Sam, Sandra K. Young, Jeremy T. Beales, Yagya Prasad Subedi, Chad D. Mangum, Tanner J. Allen, Miranda S. Liddell, Andrew I. Merrell, Diana I. Saavedra, Becky L. Williams, Nicole Evans, Joseph L. Beales, Mike A. Christiansen

Chemistry and Biochemistry Faculty Publications

We here disclose the total syntheses of the natural polyphenol JBIR-94 and two nonnatural analogs, whose structures are of interest for their bioactivity potential as radical scavengers. Although we initially attempted this by dually acylating both of putrecine’s amine nitrogens in a single pot, our endeavors with this method (which has been successfully reported by other groups) proved ineffectual. We accordingly opted for the lengthier approach of acylating each amine individually, which gratuitously prevailed and also aligns with separate literature precedent. Moreover, we here share our analysis of these target compounds’ cytotoxicities and IC₅₀ values against A549 (CCL-185) human …

Nonlinear Reaction–Diffusion Process Models Improve Inference For Population Dynamics, Xinyi Lu, Perry J. Williams, Mevin B. Hooten, James A. Powell, Jamie N. Womble, Michael R. Bower

Mathematics and Statistics Faculty Publications

Partial differential equations (PDEs) are a useful tool for modeling spatiotemporal dynamics of ecological processes. However, as an ecological process evolves, we need statistical models that can adapt to changing dynamics as new data are collected. We developed a model that combines an ecological diffusion equation and logistic growth to characterize colonization processes of a population that establishes long‐term equilibrium over a heterogeneous environment. We also developed a homogenization strategy to statistically upscale the PDE for faster computation and adopted a hierarchical framework to accommodate multiple data sources collected at different spatial scales. We highlighted the advantages of using a …

Individual Variation And Ecotypic Niches In Simulations Of The Impact Of Climatic Volatility, George P. Malanson, R. Justin Derose, Matthew F. Bekker

Wildland Resources Faculty Publications

Expectations of the impacts of climatic variation on species can depend on whether and how intraspecific variability is incorporated in models. Coefficients of variation from tree-ring records of Pinus albicaulis through time and across space were used to parameterize volatility and individuality, respectively. The records across sites were used to differentiate the average modes on an environmental gradient for Gaussian fitness of ecotypic niches, and to add further individual variation in mode and standard deviation of these functions in individual-based Monte Carlo simulations of reproduction and mortality with inheritance of individual variability. Ecotypic gamma and Shannon diversity decreased with volatility …