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Leveraging Context Patterns For Medical Entity Classification, Garrett Johnston Jun 2022

Leveraging Context Patterns For Medical Entity Classification, Garrett Johnston

Computer Science Senior Theses

The ability of patients to understand health-related text is important for optimal health outcomes. A system that can automatically annotate medical entities could help patients better understand health-related text. Such a system would also accelerate manual data annotation for this low-resource domain as well as assist in down- stream medical NLP tasks such as finding textual similarity, identifying conflicting medical advice, and aspect-based sentiment analysis. In this work, we investigate a state-of-the-art entity set expansion model, BootstrapNet, for the task of medical entity classification on a new dataset of medical advice text. We also propose EP SBERT, a simple model …


Entity Based Sentiment Analysis For Textual Health Advice, Dae Lim Chung Apr 2022

Entity Based Sentiment Analysis For Textual Health Advice, Dae Lim Chung

Computer Science Senior Theses

This work explores entity based sentiment analysis for textual health advice through deep learning. We fine tuned a pretrained BERT model to analyze sentiments across five different predetermined categories which consist of food, medicine, disease, exercise, and vitality for three different sentiments: positive, negative, and neutral. Original set of annotated medical dataset from Dartmouth College’s Persist Lab was used to conduct the experiments. For the aim of tailoring the data for the purpose of entity based sentiment analysis, we explored data transformation techniques to generate optimum training examples. During the experiments, we were able to discover that the wide variety …