Physical Sciences and Mathematics Commons^™

Assessment Of Pathogens In Flood Waters In Coastal Rural Regions: Case Study After Hurricane Michael And Florence, Moiz Usmani, Sital Uprety, Nathan Bonham, Yusuf Jamal, Yuqing Mao, Daisuke Sano, Joanna Shisler, Avinash Unnikrishnan, Thanh H. Nguyen, Antarpreet Jutla

Civil and Environmental Engineering Faculty Publications and Presentations

The severity of hurricanes, and thus the associated impacts, is changing over time. One of the understudied threats from damage caused by hurricanes is the potential for cross-contamination of water bodies with pathogens in coastal agricultural regions. Using microbiological data collected after hurricanes Florence and Michael, this study shows a dichotomy in the presence of pathogens in coastal North Carolina and Florida. Salmonella typhimurium was abundant in water samples collected in the regions dominated by swine farms. A drastic decrease in Enterococcus spp. in Carolinas is indicative of pathogen removal with flooding waters. Except for the abundance presence of Salmonella …

Warming Of The Willamette River, 1850–Present: The Effects Of Climate Change And Direct Human Interventions, Stefan Talke, David Jay, Heida Diefenderfer

Civil and Environmental Engineering Faculty Publications and Presentations

Using archival research methods, we found and combined data from multiple sources to produce a unique, 140 year record of daily water temperature (Tw) in the lower Willamette River, Oregon (1881–1890, 1941–present). Additional daily weather and river flow records from the 1850s onwards are used to develop and validate a statistical regression model of Tw for 1850–2020. The model simulates the time-lagged response of Tw to air temperature and river flow, and is calibrated for three distinct time periods: the late 19th, mid 20th, and early 21st centuries. Results show that Tw has trended upwards at ~1.1 °C …

Distribution And Antibiotic Resistance Profiles Of Salmonella Enterica In Rural Areas Of North Carolina After Hurricane Florence In 2018, Yuqing Mao, Mohamed Zeineldin, Moiz Usmani, Sital Uprety, Joanna Shisler, Antarpreet Jutla, Avinash Unnikrishnan, Thanh H. Nguyen

Civil and Environmental Engineering Faculty Publications and Presentations

The frequency and magnitude of extreme events are increasing globally (Arnell & Gosling, 2016). Inundation, as a result of massive flooding, has the potential to change environmental conditions abruptly, and as a result, add pressure to the metabolism and proliferation of microorganisms (Furtak et al., 2020). The resulting overland flows and additional burden from domestic sewer and septic tank systems during an extreme flood event can introduce pathogens into ecologically unstable water bodies. For example, Yu et al. (2018) reported elevated levels of Escherichia coli and antibiotic resistance genes (ARGs) in river water samples 6 months after flooding in Houston, …

Storm Tide Amplification And Habitat Changes Due To Urbanization Of A Lagoonal Estuary, Philip Orton, Eric W. Sanderson, Stefan Talke, Mario Giampieri, Kytt Macmanus

Civil and Environmental Engineering Faculty Publications and Presentations

In recent centuries, human activities have greatly modified the geomorphology of coastal regions. However, studies of historical and possible future changes in coastal flood extremes typically ignore the influence of geomorphic change. Here, we quantify the influence of 20th-century man-made changes to Jamaica Bay, New York City, on present-day storm tides. We develop and validate a hydrodynamic model for the 1870s based on detailed maps of bathymetry, seabed characteristics, topography, and tide observations for use alongside a present-day model. Predominantly through dredging, landfill, and inlet stabilization, the average water depth of the bay increased from 1.7 to 4.5 m, tidal …

Effects Of Water Level Fluctuation On Thermal Stratification In A Typical Tributary Bay Of Three Gorges Reservoir, China, Juxiang Jin, Scott Wells, Defu Liu, Guolu Yang, Senlin Zhu, Jun Ma, Zhengjian Yang

Civil and Environmental Engineering Faculty Publications and Presentations

Xiangxi River is a typical tributary of Three Gorges Reservoir (TGR) in China. Based on field observations in 2010, thermal stratification was significant in most months of the year. Through field data analysis and numerical simulations, the seasonal and spatial variation of thermal stratification as related to the impact of the operation of TGR were investigated. Thermal stratification was most pronounced from April to September in the Xiangxi River tributary. Air temperature (AT) and water level (WL) were the two dominant variables impacting thermal stratification. AT affected the surface water temperature promoting the formation of thermal stratification, and high WLs …

Decision Support System For The Design And Planning Of Low-Impact Development Practices: The Case Of Seoul, Jae-Yeol Song, Eun-Sung Chung, Soo Hyun Kim

Civil and Environmental Engineering Faculty Publications and Presentations

This study presented the conceptual framework of the water-management analysis module (WMAM) to derive effective physical specifications for the design and planning of low-impact development (LID) practices using the storm-water management model (SWMM). This decision-support system can be used for six LID types and has the following key capabilities: determining relevant LID design parameters within the SWMM that critically influence the hydrological cycle components using a simple sensitivity analysis and determining the best hydrological values for LID planning specification. This study analyzed a highly urbanized university campus as a case study to determine the design and planning specifications for an …

Apprehensive Drought Characteristics Over Iraq: Results Of A Multidecadal Spatiotemporal Assessment, Maysoun Ayad Hameed, Ali Ahmadalipour, Hamid Moradkhani

Civil and Environmental Engineering Faculty Publications and Presentations

Drought is an extreme climate phenomenon that happens slowly and periodically threatens the environmental and socio-economic sectors. Iraq is one of the countries in the Middle East that has been dealing with serious drought-related issues in the 21st century. Here, we investigate meteorological drought across Iraq from 1948 to 2009 at 0.25° spatial resolution. The Standardized Precipitation Evapotranspiration Index (SPEI) has been utilized as a multi-scalar drought index accounting for the effects of temperature variability on drought. Four of the main characteristics of drought including extent, intensity, frequency and duration are studied and the associated spatiotemporal patterns are investigated for …

Ce-Qual-W2 Model And Model Set-Up, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

Conference presentation that provides background information on the CE-QUAL-W2 water modeling software, with examples of its use and instructions on set-up and application.

Amaila Falls Hydroelectric Project Model Development And Scenarios, Chris Berger, Scott A. Wells, Vanessa Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The focus of this present study is to perform the following tasks:

* Develop a hydrodynamic and water quality model of the reservoir formed by the Amaila Falls Hydroelectric Project

* Develop and run modeling scenarios

Water quality model simulations of the 23.3 km² reservoir for Amaila Falls Hydroelectric Project were conducted for low, average, and high flow years. A scenario with no vegetation removed from the reservoir for an average flow was also simulated. Conditions downstream of the reservoir were also modeled using a river model.

The model used for the reservoir formed by Amaila Falls Hydroelectric Project …

Spokane River In Idaho And Washington Tmdl Water Quality And Hydrodynamic Modeling Quality Assurance Project Plan -- Draft, Scott A. Wells, Chris Berger

Civil and Environmental Engineering Faculty Publications and Presentations

The focus of this present study is to perform the following tasks:

• Converting the Upper Spokane River CE‐QUAL‐W2 models (Washington and Idaho) to version 3.6

• Combining the Washington and Idaho models

• Reviewing and updating model boundary conditions

• Check model calibration

• Meet with stakeholders

• Develop and Run Modeling Scenarios

• Create reports on calibration and scenario runs

Pend Oreille River Model: Model Scenario Simulations, Robert Leslie Annear, Chris Berger, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Idaho Department of Environmental Quality is interested in developing a temperature and water quality Total Maximum Daily Load (TMDL) allocation for the Pend Oreille River between the Long Bridge near the historical Lake Pend Oreille outlet and Albeni Falls Dam (U.S. Army Corps of Engineer’s reservoir) as shown in Figure 1.

This management scenario report is an update of a prior report. The management scenarios had to be rerun because of a modeling error made with the outflows rate of Albeni Falls Dam. The new calibration error statistics were compared with the old statistics in Appendix B: Model Calibration …

Lake Whatcom Model Calibration With Variable Stoichiometry In Sediments - Revised, Chris Berger, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

This memorandum discusses model calibration and enhancements made to the Lake Whatcom water quality model. Model development and initial calibration were documented in the report “Lake Whatcom Water Quality Model” (Berger and Wells, 2005). The Lake Whatcom water quality model has been converted from CE-QUAL-W2 version 3.2 to version 3.5 (Cole and Wells, 2006).

Ce-Qual-W2: A Two-Dimensional, Laterally Averaged, Hydrodynamic And Water Quality Model, Version 3.5, Thomas M. Cole, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

This manual documents the two-dimensional, laterally averaged, hydrodynamic and water quality model CE-QUAL-W2. This manual was prepared in the Environmental Laboratory (EL), us Army Engineer Waterways Experiment Station (WES), Vicksburg, MS. Bonita Niel and Dr. William Roper, CERD-C provided funding for Version 3.1 of the manual under the Numerical Model Maintenance Program. The principal investigator for Version 3.2 of CE-QUAL-W2 and the User Manual was Mr. Thomas M. Cole of the Water Quality and Contaminant Modeling Branch (WQCMB), Environmental Processes and Effects Division (EPED), EL. This report supersedes the Version 3.2 manual. Revisions made in this V3.5 manual were made …

Lake Whatcom Water Quality Model, Chris Berger

Civil and Environmental Engineering Faculty Publications and Presentations

A water quality model of Lake Whatcom, Washington was developed as part of a Total Maximum Daily Load Study for the Washington Department of Ecology. Lake Whatcom is a large natural lake which is listed on the 1998 Washington State 303(d) list of waterbodies which do not meet the criterion for dissolved oxygen. Located next to the city of Bellingham, it is approximately 10 miles long and has a surface area of approximately 5000 acres and a maximum depth of over 100 meters. Eutrophication processes in the lake have been accelerated in recent years perhaps by the availability of nutrients …

Waldo Lake Research In 2003, Mark D. Sytsma, John Rueter, Richard Petersen, Roy Koch, Scott A. Wells, Rich Miller, Laura Johnson, Robert Leslie Annear

Civil and Environmental Engineering Faculty Publications and Presentations

This report summarizes the first year of an effort to develop a more complete understanding of the physical, chemical, and biological characteristics that drive the ecological processes of Waldo Lake. Modern limnology recognizes the importance of watershed processes as well as in- lake processes in lake ecosystem functioning. Therefore, the approach included consideration of watershed hydrology and forcing functions that determine hydrodynamics of the system as well physical and chemical factors that may be important in regulating primary production in the lake. Data collected since 1998 was summarized and bathymetry of the basin was mapped using state-of-the-art digital depth sounding …

Ce-Qual-W2: A Two-Dimensional, Laterally Averaged, Hydrodynamic And Water Quality Model, Version 3.1, Thomas M. Cole, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

CE-QUAL-W2 is a two-dimensional, longitudinal/vertical, hydrodynamic and water quality model. Because the model assumes lateral homogeneity, it is best suited for relatively long and narrow waterbodies exhibiting longitudinal and vertical water quality gradients. The model has been applied to rivers, lakes, reservoirs, estuaries, and combinations thereof.

The application of CE-QUAL-W2 requires knowledge in the following areas: 1. Hydrodynamics 2. Aquatic biology 3. Aquatic chemistry 4. Numerical methods 5. Computers and FORTRAN coding 6. Statistics 7. Data assembly and reconstruction.

Water quality modeling is in many ways an art requiring not only knowledge in these areas but also experience in their …

The Bull Run River–Reservoir System Model, Robert Leslie Annear, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Bull Run watershed is located 41.8 kilometers east of Portland, Oregon in the Mt. Hood National Forest and consists of two reservoirs supplying drinking water to over 840,000 people in the Portland metropolitan area. In March 1998 Steelhead and Spring Chinook were listed as threatened in the Lower Columbia basin under the Endangered Species Act. Historical reservoir operations during the summer released no water downstream resulting in stream temperatures exceeding the state water quality standard for salmonids. CE-QUAL-W2 Version 3 is a two-dimensional water quality and hydrodynamic model capable of modeling watersheds with interconnected rivers, reservoirs and estuaries. CE-QUAL-W2 …

Basis Of The Ce-Qual-W2 Version 3 River Basin Hydrodynamic And Water Quality Model, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

CE-QUAL-W2 Version 3, a 2-D (longitudinal-vertical) hydrodynamic and water quality model for river basins combining both river and stratified river-estuary and lake-reservoir flow, is a development product of the Waterways Experiment Station in Vicksburg, MS, USA. With the development and release of any revised or reformulated model codes, significant model validation is required. This includes comparison of model results to simple analytical solutions for hydrodynamics and water quality transport, as well as comparison to laboratory and field data. In this paper, the model is compared to numerous analytical solutions for mass transport (1- D advective mass transport) and hydrodynamics (impulsive …

Willamette River And Columbia River Waste Load Allocation Model, Chris Berger, Robert Leslie Annear, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

A hydrodynamic and water quality model of the Lower Willamette River was developed to evaluate management alternatives designed to improve water quality. The Lower Willamette River is located in Oregon and drains a watershed covering 11500 square miles consisting of forested, agricultural, and urban lands. Inflows include treated municipal wastes and industrial effluents along with non-point sources from agricultural, silvicultural and urbanized land. The model was designed to address temperature, dissolved oxygen, algae, pH and bacteria concerns. The Corps of Engineers two-dimensional, laterally averaged, hydrodynamic and water quality model CE-QUAL-W2, Version 3 was applied. CE-QUAL-W2 consists of directly coupled hydrodynamic …

Validation Of The Ce-Qual-W2 Version 3 River Basin Hydrodynamic And Water Quality Model, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

CE-QUAL-W2 Version 3, a 2-D (longitudinal-vertical) hydrodynamic and water quality model for river basins combining both river and stratified river-estuary and lakereservoir flow, is a development product of the Waterways Experiment Station in Vicksburg, MS, USA. With the development and release of any revised or reformulated model codes, significant model validation is required. This includes comparison of model results to simple analytical solutions for hydrodynamics and water quality transport, as well as comparison to laboratory and field data. In this paper, the model is compared to numerous analytical solutions for mass transport (1-D advective mass transport) and hydrodynamics (impulsive wind …

Theoretical Basis For The Ce-Qual-W2 River Basin Model, Scott A. Wells, Thomas M. Cole

Civil and Environmental Engineering Faculty Publications and Presentations

The primary objective of this research is to integrate a riverine model into the existing W2 code that would provide the capability for modeling entire watersheds. This task was accomplished by the following steps:

• Formal derivation of governing equations and solution algorithm with general channel slope

• Detailed analysis of algorithm for linking branches and smooth implementation of boundary conditions between branches

• Algorithm development and changes to basic model code (including branch definitions with slope, slope correction to solution algorithm, transfer of momentum between internal branches)

These tasks were performed with the following constraints and initiatives:

• Utilize …

Ce-Qual-W2, Version 3, Scott A. Wells, Thomas M. Cole

Civil and Environmental Engineering Faculty Publications and Presentations

CE-QUAL-W2 is a two-dimensional water quality and hydrodynamic code supported by the U.S. Army Engineer Research and Development Center (Cole and Buchak 1995). The model has been widely applied to stratified surface water systems such as lakes, reservoirs, and estuaries and computes water levels, horizontal and vertical velocities, temperature, and 21 other water quality parameters (such as dissolved oxygen, nutrients, organic matter, algae, pH, the carbonate cycle, bacteria, and dissolved and suspended solids). A typical model grid is shown in Figure 1 where the vertical axis is aligned with gravity.

This technical note documents the development of CE-QUAL-W2, Version 3, …

Variation Of Constitutive Model Formulation On Analytical Cake Filtration Models, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

Constitutive properties are required to model porosity, effective stress, porewater pressure, or permeability during cake filtration. By using an analytical cake filtration model based on Tiller (1975) with various constitutive property formulations, predictions of effective stress, permeability, and porosity distributions in a filter cake can be made. This analytical approach was only valid when spatially average values of porosity and pressure differential were constant over time. Several different constitutive property formulations were compared to data of effective stress and permeability as a function of porosity for kaolin clay in water. Also the spatial distribution of porosity in a filter cake …

Ce-Qual-W2 Version 3: Hydrodynamic And Water Quality River Basin Modeling, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

CE-QUAL-W2 is a two-dimensional (longitudinal-vertical) water quality and hydrodynamic computer simulation model that was originally developed for deep, long, and narrow waterbodies. The current model, Version 2, has been used in over 200 river, reservoir/lake, and estuary applications throughout the U.S. and abroad. Version 2, though, cannot accommodate systems that have a significant sloping water surface since the vertical coordinate system is aligned with gravity and vertical accelerations are neglected. The governing equations for CE-QUAL-W2 were re-derived so that it could be applied to entire river basins including river-estuary, lake-river, and reservoir-river systems with channel slopes. This re-derivation is one …

Modeling The Bull Run River-Reservoir System, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The City of Portland, Water Bureau currently operates 2 Bull Run reservoirs, Reservoir #2 and Reservoir #1 as a water supply source in the Bull Run watershed shown in Figure 1 and Figure 2. The Water Bureau wants to operate their water supply system in order to meet both water supply objectives and fish habitat objectives downstream of the Bull Run reservoirs in Bull Run River. In addition, a third Bull Run reservoir has been proposed as an additional water supply source. This reservoir also may be used to meet water supply and fish habitat objectives in Bull Run River. …

Modeling Macrophytes Of The Columbia Slough, Oregon, Chris Berger, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Columbia Slough is a tidally influenced freshwater system of wetlands, channels, and lakes located within the Portland, Oregon metropolitan area at the confluence of the Willamette and Columbia Rivers. It is a eutrophic water body susceptible to algae blooms and crashes and periods of high pH which violate water quality standards. High nutrient loads from groundwater principally controls algae productivity. Past structural changes to the Columbia Slough have included filling of wetlands and lakes and the construction of levees, dikes, culverts and irrigation channels. These changes have altered the natural flow dynamics creating an environment more conducive to eutrophication. …

Analytical Modeling Of Cake Filtration, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The specific resistance model of cake filtration is based on the assumption that the average cake resistance is constant over time. This implies also that the spatially average values of porosity and pressure differential are also constant over time since specific resistance is a function of both parameters.

An analytical cake filtration model based on Tiller (1975) was derived using constitutive properties of kaolin suspensions in distilled water. Constitutive properties were determined by experiments performed using high-energy X-rays and porewater pressure probes to determine the spatial and temporal distributions of porosity and porewater pressure. Using these constitutive properties, predictions were …

Application Of Mathematical Modeling And Computer Simulation For Solving Water Quality Problems, Jacek Makinia, Scott A. Wells, David Crawford, Marian Kulbik

Civil and Environmental Engineering Faculty Publications and Presentations

Deteriorated water resources in Central and Eastern Europe call for actions that should be undertaken to improve current conditions and to protect human and environmental health. Mathematical modeling and computer simulation is often an integral part of the decision-making process. Models and simulations allow rapid and varied evaluation of causes and effects and the principal advantage is that they enable an analysis of even long-term actions with limited investment costs. This paper provides an overview of popular models used for simulation of major elements of a water quality system: surface water quality (QUAL2E), wastewater treatment (Activated Sludge Model No.1), sewer …

Filtration Modeling Of A Plate-And-Frame Press, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The porosity distribution and filtrate production during cake filtration in a plate-and-frame filter press were simulated mathematically. The model considered filtration that occurs after the filling process, not filtration that occurs as the suspension fills the cell. Governing equations for the temporal porosity distribution were developed for a plateand- frame press. The governing equations were solved numerically using an alternating-direction-implicit scheme. Appropriate initial and boundary conditions were determined based on characteristics of the plate-and-frame press and of the suspension properties. Predicted porosity and velocity distributions were calculated for assumed constitutive parameters.

Gravity Drainage Prior To Cake Filtration, Scott A. Wells, Gregory K. Savage

Civil and Environmental Engineering Faculty Publications and Presentations

During the initial stages of a Buchner funnel or specific resistance test, gravity drainage occurs prior to application of the pressure differential. Some allow time for a small cake to form by gravity drainage. Filtrate data from the gravity drainage period can be used to determine constitutive properties of the cake under a hydrostatic pressure gradient. The constitutive properties that define the structure of the cake include the permeability and porosity as functions of the applied stress. Equations governing the drainage rate during a gravity filtration experiment assuming a constant and a non-constant average cake permeability and cake porosity were …