Physical Sciences and Mathematics Commons^™

Controversy Analysis And Detection, Shiri Dori-Hacohen

Doctoral Dissertations

Seeking information on a controversial topic is often a complex task. Alerting users about controversial search results can encourage critical literacy, promote healthy civic discourse and counteract the "filter bubble" effect, and therefore would be a useful feature in a search engine or browser extension. Additionally, presenting information to the user about the different stances or sides of the debate can help her navigate the landscape of search results beyond a simple "list of 10 links". This thesis has made strides in the emerging niche of controversy detection and analysis. The body of work in this thesis revolves around two …

Towards Osgeo Best Practices For Scientific Software Citation: Integration Options For Persistent Identifiers Fn Osgeo Project Repositories, Peter Löwe, Markus Neteler, Jan Goebel, Marco Tullney

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

As a contribution to the currently ongoing larger effort to establish Open Science as best practices in academia, this article focuses on the Open Source and Open Access tiers of the Open Science triad and community software projects. The current situation of research software development and the need to recognize it as a significant contribution to science is introduced in relation to Open Science. The adoption of the Open Science paradigms occurs at different speeds and on different levels within the various fields of science and crosscutting software communities. This is paralleled by the emerging of an underlying futuresafe technical …

Using Osgeo Solutions For Local Development Systems Implementation. The Experience For The Northern Region Of Costa Rica, López-Villegas Oscar, Víquez-Acuña Oscar, Víquez-Acuña Leonardo

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

Although some general definitions classify Spatial Data Infrastructures (SDI) as technological standards, institutional and even political agreements, which allow the discovery and use of geospatial information by users for different purposes [Kuhn 2005], computationally this platforms are valuable data repositories that should reach people efficiently and effectively for analysis and decision making on issues of collective interest. Costa Rica has several SDIs experiences at national level (SNIT - http://www.snitcr.go.cr), regional level (IDEHN - http://www.idehn.tec.ac.cr) or local/cantonal level (IDESCA - http://idesca.cr). Those infrastructures can facilitate access between geospatial information managers and their consumers through the implementation of particular software applications. The …

Kadaster Data Platform - Overview Archicture, Erwin Folmer, Wouter Beek

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

The Dutch Cadastre is publishing its geospatial data assets as Linked Open Data through the Kadaster Data Platform (KDP). The KDP supports the following three Linked Data browsing paradigms: (1) graph navigation, (2) hierarchical browsing, and (3) faceted browsing. Graph navigation uses the graph-shape of the RDF datamodel, to display concepts and instances as nodes, and properties between them as edges between those nodes. Graph navigation works well for explorative browsing. For graph navigation the KDP uses LODView (http://lodview.it), an existing OSS. Hierarchical browsing uses the tree structure of the concept hierarchy in order to display the various classes and …

Urban Multi-Scale Environmental Predictor - An Extensive Tool For Climate Services In Urban Areas, Fredrik Lindberg, Sue Grimmond, Andrew Gabey, Bei Huang, Christoph W. Kent, Ting Sun, Natalie E. Theeuwes, Leena Järvi, Helen Ward, Izzy Capel-Timms, Yy Chang, Per Jonsson, Niklas Krave, Dongwei Liu, D Meyer, K Frans G. Olofson, Jian-Guo Tan, Dag Wästberg, Lingbo Xue, Zhe Zhang

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

The city based climate service tool UMEP (Urban Multi-scale Environmental Predictor) is a coupled modelling system that combines models essential for urban climate processes and is developed as an extensive QGIS plugin. An application is presented to illustrate its potential, specifically of the identification of heat waves and cold waves in cities. The tool has broad utility for applications related to outdoor thermal comfort, urban energy consumption, climate change mitigation etc. It includes tools to: enable users to input atmospheric and surface data from multiple sources, prepare meteorological data for use in urban areas, undertake simulations and consider scenarios, and …

The Utility Of Beautiful Visualizations, Laura Tateosian, Reza Amindarbari, Christopher Healey, Pavel Kosik, James Enns

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

Geovisualizations provide a means to inspect large complex multivariate datasets for information that would not otherwise be available with a tabular view or summary statistics alone. Aesthetically appealing visualizations can elicit prolonged exploration and encourage discovery. Creating data geovisualizations that are effective and beautiful is an important yet difficult challenge. Here we present a tool for rendering geovisualizations of continuous spatial data using the painterly techniques of impressionist-era artists. The techniques, which have been tested in controlled studies, vary the visual properties (e.g., hue, size, and tilt) of brush strokes to represent multiple data attributes simultaneously in each location. To …

Tracking 19th Century Late Blight From Archival Documents Using Text Analytics And Geoparsing, Laura Tateosian, Rachael Guenter, Yi-Peng Yang, Jean Ristaino

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

In 1845, Ireland's potato crop was struck by a devastating potato disease that killed Ireland’s crop caused devastation for seven years and led to mass starvation and emigration from the country. The cause of the potato destruction was a fungus-like plant pathogen. There are several theories about the origin of the disease and the source of the 19th century outbreaks. We use historical documents contemporary to that time to investigate spatial information that might inform these mysteries. We present methodologies for automatically extracting information from these voluminous data sources. We identify and map geographic locations that are proximate in the …

Towards A Web-Enabled Geo-Sample Web: An Open Source Resource Registration And Management System For Connecting Geo-Samples To The Web, Anusuriya Devaraju, Jens Klump, Victor Tey, Simon Cox, Ryan Fraser

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

Within the earth sciences the curation and sharing of geo-samples is crucial to supporting reproducible research, in addition to extending the use of the samples in new research, and saving costs by avoiding sample loss and duplicating sampling activities. In the Commonwealth Scientific and Industrial Research Organisation (CSIRO), researchers gather various geo-samples as part of their field studies and collaborative projects. The diversity of the samples and their unsystematic management led ambiguous sample numbers, incomplete sample descriptions, and difficulties in finding the samples and their related data. These problems are also found in universities, research institutes and government agencies, which …

The Billion Object Platform (Bop): A System To Lower Barriers To Support Big, Streaming, Spatio-Temporal Data Sources, Devika Kakkar, Ben Lewis, David Smiley, Ariel Nunez

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

With funding from the Sloan Foundation and Harvard Dataverse, the Harvard Center for Geographic Analysis (CGA) has developed a big spatio-temporal data visualization platform called the Billion Object Platform or "BOP". The goal of the project is to lower barriers for scholars who wish to access large, streaming, spatio-temporal datasets. Since once archived, streaming data gets big fast, and since most GIS systems don't support interactive visualization of millions of objects, a new platform was needed. The BOP is loaded with the latest billion geo-tweets and is fed a real-time stream of about 1 million tweets per day. The CGA …

Optimizing Spatiotemporal Analysis Using Multidimensional Indexing With Geowave, Richard Fecher, Michael A. Whitby

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

The open source software GeoWave bridges the gap between geographic information systems and distributed computing. This is done by preserving locality of multidimensional data when indexing it into a single-dimensional key-value store, using space filling curves. This means that like values in each dimension are stored physically close together in the datastore. We demonstrate the efficiencies and benefits of the GeoWave indexing algorithm to store and query billions of spatiotemporal data points. We show how this indexing strategy can be used to reduce query and processing times by multiple orders of magnitude using publicly available taxi trip data published by …

Exploring The Relationship Between Climate And Forest Conditions In Forest Classee De La Mondah (Gabon) Using Remote Sensing Data, Mariano Mboumba

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

This study aims to examine the relationship between temperature and precipitation as climatic factors and the vegetation characteristics in Forêt Classée de la Mondah (Gabon). A pixel based spatial analysis procedure with QGIS was used to extract vegetation characteristics from MODIS on Terra, NDVI band, data from February 2000 to December 2015, while temperature and precipitation were monitored from January 1980 to December 2015 to highlight climate fluctuations in the study area. Two regression analyses were conducted : one between temperature and NDVI and the other one between precipitation and NDVI. Results showed that temperature and precipitation did not vary …

White Blood Cell Dna Methylation And Risk Of Breast Cancer In The Prostate, Lung, Colorectal, And Ovarian Cancer Screening Trial (Plco), Susan R. Sturgeon, J. Richard Pilsner, Kathleen F. Arcaro, Kaoru Ikuma, Haotian Wu, Soon-Mi Kim, Nayha Chopra-Tandon, Adam R. Karpf, Regina G. Ziegler, Catherine Schairer, Raji Balasubramanian, David A. Reckhow

Biostatistics and Epidemiology Faculty Publications Series

Background

Several studies have suggested that global DNA methylation in circulating white blood cells (WBC) is associated with breast cancer risk.

Methods

To address conflicting results and concerns that the findings for WBC DNA methylation in some prior studies may reflect disease effects, we evaluated the relationship between global levels of WBC DNA methylation in white blood cells and breast cancer risk in a case-control study nested within the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial (PLCO) cohort. A total of 428 invasive breast cancer cases and 419 controls, frequency matched on age at entry (55–59, 60–64, 65–69, ≥70 …

From Planning To Passing: The Amherst, Massachusetts Plastic Bag Ban, Kevin J. Hollerbach

Student Showcase

This case study will detail the background and influences for a plastic bag ban in the town of Amherst, outline the steps taken from planning to passage, and address roadblocks and missteps that may be avoided with the implementation of future bans. It is my hope that this document will not only serve as a guide, but also an inspiration for additional local action in Massachusetts and across the country. No matter what the national political climate or attitude towards environmental issues, local action is always possible, and change is usually easier than you think. Think globally, act locally!

The Perfect Storm: Lasting Impacts Of Structural Adjustment Programs And Pressures Of Climate Change In Latin America And Ghana, Africa, Sam Kefferstan

Student Showcase

This work examines the intersectionality of economic, social and environmental impacts of the International Monetary Fund’s and World Bank’s application of structural adjustment programs (SAPs) within Latin America and Ghana, Africa. Varying economic and social indicators illustrate the underperformance of SAPs in their intended mission to reduce poverty and debt in developing nations. This research argues Gross Domestic Product is an imperfect measure of improving quality of life and points towards other indicators such as increasing national debt, rising incidences of poverty, and exacerbated regional disparities to demonstrate the shortcomings of SAPs. This piece also investigates the limitations adjustment imposes …

Umass Amherst Guide To Zero-Waste Events, Kevin J. Hollerbach, Ainsley Brosnan-Smith

Student Showcase

As the University of Massachusetts Amherst continues to grow, and as programming for the campus community becomes an ever-rising priority, events organizers will need to consider the waste implications of every event to comply with state and University standards, goals, and policies. This "Guide to Zero-Waste Events" aims to streamline the planning process as well as provide tips and examples for follow-through to implementing a successful zero-waste event. The guide also presents actionable policy recommendations for the University to reduce waste and increase diversion from large-scale outdoor events on the UMass Amherst campus.

Alcohol Consumption And Breast Tumor Gene Expression, Jun Wang, Yujing J. Heng, A. Heather Eliassen, Rull M. Tamimi, Aditi Hazra, Vincent J. Carey, Christine B. Ambrosone, Victor P. De Andrade, Adam Brufsky, Fergus J. Couch, Tari A. King, Francesmary Modugno, Celine M. Vachon, David J. Hunter, Andrew H. Beck, Susan E. Hankinson

Biostatistics and Epidemiology Faculty Publications Series

Background

Alcohol consumption is an established risk factor for breast cancer and the association generally appears stronger among estrogen receptor (ER)-positive tumors. However, the biological mechanisms underlying this association are not completely understood.

Methods

We analyzed messenger RNA (mRNA) microarray data from both invasive breast tumors (N = 602) and tumor-adjacent normal tissues (N = 508) from participants diagnosed with breast cancer in the Nurses’ Health Study (NHS) and NHSII. Multivariable linear regression, controlling for other known breast cancer risk factors, was used to identify differentially expressed genes by pre-diagnostic alcohol intake. For pathway analysis, we performed gene …