Physical Sciences and Mathematics Commons^™

A Systematic Study Of Neutron Production In Two Versions Of The Mevion Proton-Therapy System, Nima Tatari

Arts & Sciences Electronic Theses and Dissertations

This thesis presents a study of neutron production in two types of proton-therapy systems: passive scattering Mevion S250, and active scanning Mevion S250i. The scattering system has been operating at Washington University in St. Louis since 2013. The scanning system was installed in the same building in 2020. The scanning system has the advantage of producing fewer neutrons due to a focused scanned beam and the absence of beam scatterers, collimators, and a static brass aperture. A systematic particle transport Monte Carlo analysis using the Geant4 toolkit has been performed to track the neutrons produced in various components of each …

Probing New Physics Beyond The Standard Model Via New Neutrino Interactions, Garv Chauhan

Arts & Sciences Electronic Theses and Dissertations

The Standard Model (SM) of Particle Physics provides a self-consistent quantum field theoretic framework to explain three of the four known fundamental forces (electromagnetic, weak, strong) along with classifying all known elementary particles. Since its conception in the 1960s, the SM has been one of the most tested theories of physics and has withstood all experimental batterings. In spite of these successes, there are compelling indications, both experimental and theoretical, that require us to expand our understanding of the nature beyond the SM (BSM). Arguably the most glaring indication of BSM physics is the observation of neutrino oscillations, which implies …

Computational Methods For Analysis Of Data For Conformational And Phase Equilibria Of Disordered Proteins, Jared Michael M Lalmansingh

Arts & Sciences Electronic Theses and Dissertations

Intrinsically disordered proteins and regions (IDPs / IDRs) are a class of proteins with diverse conformational heterogeneity that do not fold into a tertiary structure due to the lack of a native structural state. Consequently, disordered proteins are remarkably flexible and exhibit multivalent properties that enable them to adopt myriad functional roles within the cell such as: signaling transduction, transcription, enzymatic catalysis, translation, and many more. Due to their multivalency, some IDPs undergo monomeric and heterotypic interactions which can drive phase separation. Such IDPs can form membraneless organelles with specific regulatory roles within the cell which include, but are not …

Single-Molecule Localization Microscopy Of 3d Orientation And Anisotropic Wobble Using A Polarized Vortex Point Spread Function, Tianben Ding, Matthew D. Lew

Electrical & Systems Engineering Publications and Presentations

Within condensed matter, single fluorophores are sensitive probes of their chemical environments, but it is difficult to use their limited photon budget to image precisely their positions, 3D orientations, and rotational diffusion simultaneously. We demonstrate the polarized vortex point spread function (PSF) for measuring these parameters, including characterizing the anisotropy of a molecule’s wobble, simultaneously from a single image. Even when imaging dim emitters (∼500 photons detected), the polarized vortex PSF can obtain 12 nm localization precision, 4°–8° orientation precision, and 26° wobble precision. We use the vortex PSF to measure the emission anisotropy of fluorescent beads, the wobble dynamics …

Non-Hermitian Physics And Engineering In Whispering Gallery Mode Microresonators, Changqing Wang

McKelvey School of Engineering Theses & Dissertations

Non-Hermitian physics describes the behaviors of open systems which have interactions with the environment. It can be applied to a wide range of classical and quantum systems. Exotic physical phenomena are unveiled in such non-Hermitian systems, especially around a singular point in the parameter space, i.e., the exceptional point (EP), where the eigenvalues and the associated eigenvectors are degenerate. A plethora of demonstrations have been found in optics and photonics, where the non-Hermitian effects are ubiquitous due to the existence of optical dissipation or amplification. In particular, whispering gallery mode (WGM) resonators are ideal candidates for studying light-matter interactions in …

Community Detection In Complex Networks, Zhenqi Lu

McKelvey School of Engineering Theses & Dissertations

Network science plays a central role in understanding and modeling complex systems in many disciplines, including physics, sociology, biology, computer science, economics, politics, and neuroscience. By studying networks, we can gain a deep understanding of the behavior of the systems they represent. Many networks exhibit community structure, i.e., they have clusters of nodes that are locally densely interconnected. These communities manifest the hierarchical organization of the objects in systems, and detecting communities greatly facilitates the study of the organization and structure of complex systems.

Most existing community-detection methods consider low-order connection patterns, at the level of individual links. But high-order …

Electronic, Optical, And Magnetic Properties Of Novel Two-Dimensional Materials, Xiaobo Lu

Arts & Sciences Electronic Theses and Dissertations

The field of two-dimensional(2D) materials is experiencing rapid growth and attracting tremendous research interests within the condensed matter community due to its ultimate thickness dimension and unique physical properties. The consistently emerging novel 2D materials not only provide extraordinary intrinsic properties of their single layer and multi- layer structures but also exhibit fascinating responses to the tunable external conditions. The fertile contents and boundless possibilities of novel 2D materials make it one of the pivots of modern nanotechnology towards deepening the physics understanding and promising practical applications.

In the first part of the thesis, we reveal the distinct Stark effects …

Modeling Hyperpolarized Nmr Phenomena In Optically Pumped Semiconductors, Michael Eric West

Arts & Sciences Electronic Theses and Dissertations

Nuclear magnetic resonance (NMR) is a widely-used technique that measures the local environments of nuclei. It is able to detect small differences in energy, making it a highly-valued tool. However, the technique is challenged by inherently low sensitivities, requiring either large sample volumes or long periods of time to overcome this. In semiconductors, optical pumping (OP) can overcome this low sensitivity by creating incredibly large and dynamic nuclear spin polarizations (``hyperpolarization''), which is detectable as a large NMR signal. The combined technique of optically-pumped NMR (OPNMR) is a valuable tool that can explore electronic and nuclear phenomena within semiconductors. In …

Neural Representation In The Primary Visual Cortex Amid High Neural Variability, Ji Xia

Arts & Sciences Electronic Theses and Dissertations

Animals process high-dimensional sensory information constantly. How does neural activityin sensory cortices represent this information? Recent advances in large-scale recordings allow us to monitor activity of hundreds or thousands of neurons simultaneously across a long period of time. Population recordings showed that cortical neuronal responses to repeated sensory stimulation is highly variable from trial to trial. However, how neurons in neocortex represent sensory information amid high neural variability is not well understood. To answer this question, we used two-photon calcium imaging to record from hundreds of excitatory neurons simultaneously from mouse primary visual cortex. We analyzed neural responses to repeated …

Development Of A Diamond Defect Quantum Sensing Platform For Probing Novel Quantum Magnetic Phases, Jeffrey Ahlers

Senior Honors Papers / Undergraduate Theses

Nitrogen vacancy centers in diamond are highly effective quantum sensors due to their high spatial resolution and high magnetic field sensitivity. We present the construction of an optically detected magnetic resonance platform in order to facilitate the probing of magnetic phases in two-dimensional heterostructures. This includes the characterization of the required microwave voltage controlled oscillator and amplifier. In the presence of crystal strain, we measure ensemble nitrogen vacancy spin transitions with and without an applied magnetic field, and observe frequency shifts consistent with sample heating.

Computational Design Of Two-Dimensional Transition Metal Dichalcogenide Alloys And Their Applications, John Douglas Cavin

Arts & Sciences Electronic Theses and Dissertations

The discovery of bronze as an alloy of copper and tin is arguably the earliest form of material design, dating back thousands of years. In contrast, two-dimensional materials are new to the 21st century. The research presented in this dissertation is at the intersection of alloying and two-dimensional materials. I specifically study a class of two-dimensional materials known as transition metal dichalcogenides (TMDCs). Because of the large number of transition metals, there are many combinations of TMDCs that can be alloyed, making experimental exploration of the phase space of possible alloys unwieldly. Instead, I have applied first-principles methods to study …

Assessment And Diagnosis Of Human Colorectal And Ovarian Cancer Using Optical Imaging And Computer-Aided Diagnosis, Yifeng Zeng

McKelvey School of Engineering Theses & Dissertations

Tissue optical scattering has recently emerged as an important diagnosis parameter associated with early tumor development and progression. To characterize the differences between benign and malignant colorectal tissues, we have created an automated optical scattering coefficient mapping algorithm using an optical coherence tomography (OCT) system. A novel feature called the angular spectrum index quantifies the scattering coefficient distribution. In addition to scattering, subsurface morphological changes are also associated with the development of colorectal cancer. We have observed a specific mucosa structure indicating normal human colorectal tissue, and have developed a real-time pattern recognition neural network to localize this specific structure …

Partial Measurements Of Quantum Systems, Jonathan Tyler Monroe

Arts & Sciences Electronic Theses and Dissertations

Projective measurement is a commonly used assumption in quantum mechanics. However, advances in quantum measurement techniques allow for partial measurements, which accurately estimate state information while keeping the wavefunction intact. We employ partial measurements to study two phenomena. First, we investigate an uncertainty relation—in the style of Heisenberg’s 1929 thought experiment—which includes partial measurements in addition to projective measurements. We find that a weak partial measurement can decrease the uncertainty between two incompatible (non-commuting) observables. In the second study, we investigate the foundation of irreversible dynamics resulting from partial measurements. We do so by comparing the forward and time-reversed probabilities …

Computational Modelling Enables Robust Multidimensional Nanoscopy, Matthew D. Lew

Electrical & Systems Engineering Publications and Presentations

The following sections are included:

• Present State of Computational Modelling in Fluorescence Nanoscopy

• Recent Contributions to Computational Modelling in Fluorescence Nanoscopy

• Outlook on Computational Modelling in Fluorescence Nanoscopy

• Acknowledgments

• References

Mutual Interaction Induced Multi-Particle Physics In Qed Systems – Cooperative Spontaneous Emission And Photonic Dimer Enhanced Two-Photon Excitation, Yao Zhou

McKelvey School of Engineering Theses & Dissertations

In recent years, the study of quantum electrodynamics (QED) in light-matter interactions has discovered various interesting phenomenons that orient many applications. However, due to the ambient entanglement among photons and atoms, few-particle dynamics remains challenging to analyze precisely and limits the progress in several fields. In few-particle systems, different number of atoms interacting with the light field generates drastically different results, even when there is only a single photon involved in the system. The interference between individual atom’s spontaneous emission wavefunctions can cooperatively alter the effective atom-light coupling strength. Depending on the spatial distance between individual of atoms and the …

Toward An Understanding Of High-Mass Gamma-Ray Binaries: An Investigation Using Current Observatories And The Development Of A Future Gev Instrument, Zachary Daniel Hughes

Arts & Sciences Electronic Theses and Dissertations

The current generation of gamma-ray instruments have produced a treasure trove of astrophysical discoveries. Among them are a new class of objects tentatively designated high-mass gamma-ray binaries (HMGBs). Thought to be systems containing the colliding wind of a massive star and a young pulsar, these objects are distinguished by emission >1 MeV dominating their spectral energy distributions. We present a multiwavelength study of a newly detected gamma-ray source, HESS J1844-030, utilizing Chandra, Fermi, and VERITAS to show that its spatial, spectral, and flux variability properties are compatible with a classification as a HMGB. The current generation of instruments have identified …