Physical Sciences and Mathematics Commons^™

Evaluation Of Gpu Acceleration For Wrf–Sfire, Joshua Benz

Master's Projects

WRF–SFIRE is an open source, atmospheric–wildfire model that couples the WRF model with the level set fire spread model to simulate wildfires in real time. This model has many applications and more scientific questions can be asked and answered if the model can be run faster. Nvidia has put a lot of effort into easing the barrier of entry for accelerating applications with their tools to be run on GPUs. Various physical simulations have been successfully ported to utilize GPUs and have benefited from the speed increase. In this research, we take a look at WRF-SFIRE and try to use …

Nitrogenase Iron Protein Classification Using Cnn Neural Network, Amer Rez

Master's Projects

The nitrogenase iron protein (NifH) is extensively used to study nitrogen fixation, the ecologically vital process of reducing atmospheric nitrogen to a bioavailable form. The discovery rate of novel NifH sequences is high, and there is an ongoing need for software tools to mine NifH records from the GenBank repository. Since record annotations are unreliable, because they contain errors, classifiers based on sequence alone are required. The ARBitrator classifier is highly successful but must be initialized by extensive manual effort. A Deep Learning approach could substantially reduce manual intervention. However, attempts to build a character-based Deep Learning NifH classifier were …

Advancing The Ability To Predict Cognitive Decline And Alzheimer’S Disease Based On Genetic Variants Beyond Amyloid-Beta And Tau, Naveen Rawat

Master's Projects

A growing amount of neurodegenerative R&D is focused on identifying genomic- based explanations of AD that are beyond Amyloid-b and Tau. The proposed effort involves identifying some of the genomic variations, such as single nucleotide polymorphisms (SNPs), allele , chromosome, epigenetic contributors to MCI and AD that are beyond Aβ and Tau.

The project involves building a prediction model based on a support vector machine (SVM) classifier that takes into account the genomic variations and epigenetic factors to predict the early stage of mild cognitive impairment (MCI) and Alzheimer disease (AD). To achieve this, picking up important feature sets which …

Prediction Of Financial Capacity Using Diffusion Compartment Imaging, Lok Yi Tai

Master's Projects

Financial Capacity (FC) is the ability to manage one’s financial affairs, which is essential for autonomy and independence particularly for aging adults. Since dementia develops gradually, it is often difficult to detect the early signs that this cognitive dysfunction is developing This project aims to use Neurite orientation dispersion and density imaging (NODDI) to identify the white matter tracts that are associated with FC. Diffusion Tensor Images (DTI) and T1 Magnetic Resonance Images (MRI) of 18 Alzheimer’s Disease (AD) subjects, 47 Mild Cognitive Impaired (MCI) subjects, and 193 healthy control (CN) are compared to neuropsychological tests. Orientation Dispersion Index (ODI) …

Spaceflight And The Differential Gene Expression Of Human Stem Cell-Derived Cardiomyocytes, Eugenie Zhu

Master's Projects

The National Aeronautics and Space Administration (NASA) has performed many experiments on the International Space Station (ISS) to further understand how conditions in space can affect life on Earth. This project analyzed GLDS-258, a gene set from NASA’s GeneLab repository which examines the impact of microgravity on human induced pluripotent stem-cell-derived cardiomyocytes (hiPSC-CMs). While many datasets have been run through NASA’s RNA-Seq Consensus Pipeline (RCP) to study differential gene expression in space, a Homo sapiens dataset has yet to be analyzed using the RCP. The aim of this project was to run the first Homo sapiens dataset, GLDS-258, through the …

Clickbait Detection In Youtube Videos, Ruchira Gothankar

Master's Projects

YouTube videos often include captivating descriptions and intriguing thumbnails designed to increase the number of views, and thereby increase the revenue for the person who posted the video. This creates an incentive for people to post clickbait videos, in which the content might deviate significantly from the title, description, or thumbnail. In effect, users are tricked into clicking on clickbait videos. In this research, we consider the challenging problem of detecting clickbait YouTube videos. We experiment with logistic regression, random forests, and multilayer perceptrons, based on a variety of textual features. We obtain a maximum accuracy in excess of 94%.

Higher-Order Link Prediction Using Node And Subgraph Embeddings, Kalpnil Anjan

Master's Projects

Social media, academia collaborations, e-commerce websites, biological structures, and other real-world networks are modeled as graphs to represent their entities and relationships in an abstract way. Such graphs are becoming more complex and informative, and by analyzing them we can solve various problems and find hidden insights. Some applications include predicting relationships and potential links between nodes, classifying nodes, and finding the most influential nodes in the graph, etc.

A large amount of research is being done in the field of predicting links between two nodes. However, predicting a future relationship among three or more nodes in a graph is …

Computer-Aided Diagnosis Of Low Grade Endometrial Stromal Sarcoma (Lgess), Xinxin Yang

Master's Projects

Low grade endometrial stromal sarcoma (LGESS) is rare form of cancer, account- ing for about 0.2% of all uterine cancer cases. Approximately 75% of LGESS patients are initially misdiagnosed with leiomyoma, which is a type of benign tumor that is also known as fibroids. In this research, uterine tissue biopsy images of potential LGESS patients are preprocessed using segmentation and staining normalization algorithms. A wide variety of classic machine learning and leading deep learning models are then applied to classify tissue images as either benign or cancerous. For classic techniques, the highest classification accuracy we attain is 85%, while our …

Cyberbullying Classification Based On Social Network Analysis, Anqi Wang

Master's Projects

With the popularity of social media platforms such as Facebook, Twitter, and Instagram, people widely share their opinions and comments over the Internet. Exten- sive use of social media has also caused a lot of problems. A representative problem is Cyberbullying, which is a serious social problem, mostly among teenagers. Cyber- bullying occurs when a social media user posts aggressive words or phrases to harass other users, and that leads to negatively affects on their mental and social well-being. Additionally, it may ruin the reputation of that media. We are considering the problem of detecting posts that are aggressive. Moreover, …

Fake News Analysis And Graph Classification On A Covid-19 Twitter Dataset, Kriti Gupta

Master's Projects

Earlier researches have showed that the spread of fake news through social media can have a huge impact to society and also to individuals in an extremely negative way. In this work we aim to study the spread of fake news compared to real news in a social network. We do that by performing classical social network analysis to discover various characteristics, and formulate the problem as a binary classification, where we have graphs modeling the spread of fake and real news. For our experiments we rely on how news are propagated through a popular social media services such as …

Wildfire Risk Prediction For A Smart City, Rekha Rani

Master's Projects

Wildfires are uncontrolled fires that may lead to the destruction of biodiversity, soil fertility, and human resources. There is a need for timely detection and prediction of wildfires to minimize their disastrous effects. In this research, we propose a wildfire prediction model that relies on multi-criteria decision making (MCDM) to explicitly evaluates multiple conflicting criteria in decision making and weave the wildfire risks into the city’s resiliency plan. We incorporate fuzzy set theory to handle imprecision and uncertainties. In the process, we create a new data set that includes California cities’ weather, vegetation, topography, and population density records. The model …

Image-Based Real Estate Appraisal Using Cnns And Ensemble Learning, Prathamesh Dnyanesh Kumkar

Master's Projects

Real Estate Appraisal is performed to evaluate properties during a range of activities like buying, selling, mortgaging, or insuring. Traditionally, this process is done by real estate brokers who consider factors like the location of a house, its area, the number of bedrooms and bathrooms, along with other amenities to assess the property. This approach is quite subjective since different brokers may arrive at a different quote for the same property depending on their analysis. The development in machine learning algorithms has given rise to several Automated Valuation Models (AVMs) to estimate real estate prices. Real estate websites use such …

Overlapping Community Detection In Social Networks, Akshar Panchal

Master's Projects

Social networking sites are important to connect with the world virtually. As the number of users accessing these sites increase, the data and information keeps on increasing. There are communities and groups which are formed virtually based on different factors. We can visualize these communities as networks of users or nodes and the relationships or connections between them as edges. This helps in evaluating and analyzing different factors that influence community formation in such a dense network. Community detection helps in revealing certain characteristics which makes these groups in the network unique and different from one another. We can use …