Physical Sciences and Mathematics Commons^™

Multispectral Classification Of Gulf Of Maine Surface Waters: Seasonal And Interannual Variability, Brianna M. King

Electronic Theses and Dissertations

Bio-optically, surface waters of the northeastern US continental shelf are strongly heterogeneous, exhibiting highly variable distributions in both time and space of suspended sediment, colored dissolved organic matter (CDOM), and phytoplankton concentration and community structure. These render the standard global NASA satellite chlorophyll algorithm suspect. However, spectral signatures of the water are well quantified by the actual satellite-based multispectral reflectance (Rrs) measurements. Here, we use 6 bands of Rrs measurements from 19 years (1998-2016) of monthly composite SeaWiFS and MODIS data to identify the spectral signatures of dominant water types present over the northeast shelf. A merged multivariate clustering approach …

Late Quaternary Evolution And Stratigraphic Framework Influence On Coastal Systems Along The North-Central Gulf Of Mexico, Usa, Robert Hollis

Master's Theses

Coastal systems in the Gulf of Mexico are threatened to reduced sediment supply, storm impacts and relative sea level rise (RSLR). The geologic record can provide insights of geomorphic threshold crossings (formation, progradation, transgression, destruction) to these forcing mechanisms to predict future barrier evolution to climate change. The stratigraphic framework and antecedent topography directly influence coastal evolution over geologic timescales. This study synthesizes ~2100km of geophysical data, 700+ sediment cores, and 63 radiocarbon dates to regionally map two sequence boundaries, multiple ravinement surfaces and fourteen depositional facies. One marine isotope stage (MIS) 6 valley’s fill provided up to 300 x10 …

Predicted Deepwater Bathymetry From Satellite Altimetry: Non-Fourier Transform Alternatives, Maxsimo Salazar

Dissertations

Robert Parker (1972) demonstrated the effectiveness of Fourier Transforms (FT) to compute gravitational potential anomalies caused by uneven, non-uniform layers of material. This important calculation relates the gravitational potential anomaly to sea-floor topography. As outlined by Sandwell and Smith (1997), a six-step procedure, utilizing the FT, then demonstrated how satellite altimetry measurements of marine geoid height are inverted into seafloor topography. However, FTs are not local in space and produce Gibb’s phenomenon around discontinuities. Seafloor features exhibit spatial locality and features such as seamounts and ridges often have sharp inclines. Initial tests compared the windowed-FT to wavelets in reconstruction of …

Lighting A Path To Biofouling Prevention: Investigating The Effect Of Ultraviolet Light On Biofouling, Cierra Rose Braga

Theses and Dissertations

Ultraviolet light (UV) is considered an environmentally friendly antifouling method because it disrupts biological growth without the release of harmful toxins. The application of UV for the marine shipping industry is a relatively new concept, and there still remains many unknowns before it can be fully implemented. This research investigated several aspects of applying UVC for the control of fouling. A novel method of using embedded UV LEDs within a silicone coating for fouling control proved to be very effective at preventing fouling. The research also investigated the effect of using an external UVC light treatment to control fouling on …

Mid-Pliocene To Early Pleistocene Sea Surface And Land Temperature History Of Nw Australia Based On Organic Geochemical Proxies From Site U1463, Rebecca Smith

Masters Theses

Ocean gateways facilitate water circulation between ocean basins, and therefore directly impact thermohaline circulation and global climate. In order to better predict the effects of future climate change, it is critical to constrain past changes in ocean gateway behavior, and corresponding changes in thermohaline circulation, particularly during analogue periods for modern climate change. The Indonesian Throughflow (ITF) is a primary ocean gateway and vital component of the global conveyor that transports water from the Pacific Ocean into the Indian Ocean, however due to a lack of long and continuous sedimentary records from locations under its influence, changes in ITF behavior …

Tidal-, Wind-, And Buoyancy-Driven Dynamics In The Barataria Estuary And Its Impact On Estuarine-Shelf Exchange Processes, Linlin Cui

LSU Doctoral Dissertations

A three-dimensional, high-resolution, Finite-Volume Coastal Ocean Model (FVCOM) was used to study the dynamics of Barataria Estuary located in the Southeastern Louisiana. Three numerical experiments with different discharge scenarios, including the actual discharge (average ~ 160 m³ s^-1) from the Davis Pond Diversion (DPD) over three months from April to June 2010, no discharge (NO), and the proposed Mid-Barataria Diversion (MBD) with a constant discharge of 850 m³ s^-1, were conducted to investigate the impacts of river diversions on salinity gradients and residence times in the estuary. The three-month average salinity indicated that surface …

Characterizing Diatom Biofilms And Their Influence On The Sand Biogeochemistry Of High Energy Beaches, Logan C. Jarrell

Honors Theses

High energy beaches are among the most dynamic ecological settings on Earth. Compared to mudflats, diatoms of high energy beaches have been more neglected in the literature, particularly true of the intertidal biofilms that form and dissipate with nutrient cycling and light intensity over the tidal cycle. Although short lived, the productivity of these biofilms may be critical to the organic-poor sand. Through sediment coring and subsequent analyses of the uppermost sand of three suspected biofilm stations—non-runnel, runnel crest, and runnel trough—along with seemingly bare sand as a control, this study sought to verify the presence of diatom biofilms and …

Habitat Preferences Of Blue Marlin (Makaira Nigricans) And Black Marlin (Istiompax Indica) In The Eastern Pacific Ocean, Nima Farchadi, Michael G. Hinton, Andrew R. Thompson, Zhi-Yong Yin

Theses

Overexploitation and climate change can reduce the abundance and shift the spatial distribution of marine species. Determining the habitat suitability of a mobile pelagic species, such as Makaira nigricans (BUM) and Istiompax indica (BLM), can help describe their spatiotemporal distribution patterns over a broad spatial scale, which is a crucial need for fisheries management. Using 14 years (1997-2010) of Inter-American Tropical Tuna Commission (IATTC) catch data from purse-seine vessels in the eastern Pacific Ocean (EPO), we modeled the dynamic habitat suitability of BUM and BLM in response to environmental variables within the EPO using a species distribution model (MaxEnt) with …

The Effects Of Density Gradients On The Distribution And Behavior Of Copepods, Connor Cayson

Theses

Observations of fine-scale behavioral dynamics of zooplankton may shed insight into much larger-scale ecosystem patterns and phenomena. Some zooplankton, such as copepods, are known to aggregate near density gradients; however, it is not clear the extent to which density gradients alone affect copepod distribution and behavior, since these gradients are often associated with phytoplankton layers. In this study, we investigated the behavior of Calanus pacificus in response to salinity gradients through laboratory experiments observed with high-resolution video and analyzed using computational techniques. Image data were collected using two cameras recording continuously for a duration of 30 minutes or more, allowing …

Using Local Fishery Monitoring To Understand Small-Scale Coastal Fisheries In Tanzania, Matthew Robertson

LSU Master's Theses

Nearshore marine fisheries provide the main source of protein for nearly 9 million people in the coastal villages of Tanzania, yet for decades the fisheries have shown signs of overexploitation. These fisheries are small-scale and co-managed by local coastal communities in groups known as Beach Management Units (BMUs). BMUs monitor individual fishing trip data (e.g. gear, vessel, taxa); however, these data have only been analyzed in nationally aggregated statistics and to our knowledge, are not presently used in management decision making. The present thesis aimed to identify the forms of data and information that local fishery monitoring can record about …

Next Generation Sequencing Methods For Coastal Zone Water Quality Monitoring, Catherine Iskrenko

HCNSO Student Capstones

When analyzing the water quality of the coastal zone, culture-based techniques have been utilized most often to identify Fecal Indicator Bacteria in samples. Since the advent of the Sanger Method for DNA sequencing, other techniques have arisen that provide significantly more information on the microorganisms in sample, but they are still not the mainstream for water quality analysis. This capstone reviews and compares culture-based techniques, DNA sequencing, RNA sequencing, qPCR for biomarker, and 16S rDNA sequencing to highlight their merits and shortcomings for analyzing environmental water samples. The technique presented that provides the broadest range of information (including the identification …

Development Of Large-Scale Unstructured Grid Storm Surge And Sub-Grid Inundation Models For Coastal Applications, Zhuo Liu

Dissertations, Theses, and Masters Projects

Storm surge and inundation induced by hurricanes and nor'easters pose a profound threat to coastal communities and ecosystems. These storm events with powerful winds, heavy precipitation, and strong wind waves can lead to major flooding for cities along U.S. Coasts. Recent examples of Hurricane Irene (2011) in North Carolina and Virginia and Hurricane Sandy (2012) in New York City not only demonstrated the immense destructive power by the storms, but also revealed the obvious, crucial need for improved forecasting of storm tide and inundation. in part I, a large-scale unstructured-grid 3-D barotropic storm tide model SCHISM (Semi-implicit Cross-scale Hydroscience Integrated …

Impact Of Submerged Aquatic Vegetation On Water Quality In Cache Slough Complex, Sacramento-San Joaquin Delta: A Numerical Modeling Study, Xun Cai

Dissertations, Theses, and Masters Projects

Submerged aquatic vegetation (SAV) plays a significant role in many aquatic systems, and impacts both physical and ecological quantities. It can baffle currents, attenuate waves, recycle nitrogen and phosphorus from the sediment bed, perform ecosystem function as a primary producer, and provide critical habitat for many aquatic species. Conversely, the invasive SAV, Egeria densa (Brazilian waterweed), in the San Francisco Bay & Delta has been a nuisance since its introduction into the system in the 1960s. It has displaced most of the native submersed aquatic plant species in the Delta and restructured the ecosystem, thus threatening the survival of several …

Bubble Stream Production By Belugas (Delphinapterus Leucas), Megan Slack

Theses

Bubble stream production in belugas has been poorly characterized and its function is not well understood. I examined behavioral states when producing bubble streams (“bubbling”), and when bubbling calls, to determine whether bubbling was significantly associated with a particular call category or behavioral state. Using 19 hours of video and audio recordings collected over a two-day period, I quantified bubble streams of a 4-month old calf and an unrelated adult female housed together. Based on the overall activity budgets and pool of vocalizations for both animals, I calculated the expected counts of bubble streams with and without vocalizations, assuming that …

The Feasibility Of Using Inherent Optical Properties And The Apparent Optical Property Remote Sensing Reflectance To Estimate Suspended Particulate Matter, Particularly For Use In Airborne Hydrographic Surveys, Sarah Epps

Dissertations

Airborne hydrographic surveys are routinely used to create and update nautical charts around the world. This research is intended to assist in maximizing the utility of the data products made available from those surveys in accordance with the current survey–once, use–many–times initiatives. Specifically, this project evaluates the feasibility of using the data available airborne hydrographic systems that utilize bathymetric lasers and hyperspectral sensors to estimate the concentration of suspended particulate matter (SPM). SPM is sometimes also called suspended sediment. The ability to chart spatial distributions of SPM utilizing hydrographic survey systems already in operation will assist researchers, managers, and stakeholders …

Geotraces And Beyond: Studies Of Trace Elements In Coastal And Open Ocean Waters With An Emphasis On The Effects Of Oxygen Depletion And Hydrothermal Plumes, Peng Ho

Dissertations

We investigated various dissolved trace element (dTE) distributions in two distinct areas: the coastal northern Gulf of Mexico and the eastern tropical Pacific Ocean.

A multi-year (2007‒2011) chemical time series of eight stations in the western Mississippi Sound (MS) and northwestern Mississippi Bight (MB) was undertaken to examine the factors affecting chemical distributions in this dynamic region. Key findings include the frequent development of bottom water hypoxia in MB during late spring-summer, the likely contribution of submarine groundwater discharge (SGD) to the material flows, and observation of effects of episodic events including tropical storms and the opening of the Bonnet …

Hydrodynamic Drivers Of Dissolved Oxygen Variability Within A Highly Developed Tidal Creek In Myrtle Beach, South Carolina, Douglas Matthew Pastore

Electronic Theses and Dissertations

Erosion and water quality degradation have been observed in Singleton Swash in Myrtle Beach, SC, and have been hypothesized to be related to migration of the beach-face channel. Dredging this channel temporarily fixes erosional threats to nearby infrastructure but the effects on water quality are not well understood. It is hypothesized that variations in dissolved oxygen (DO) concentration (used here as a proxy for water quality) within the water column are related to changes in vertical mixing and transport due to oceanic tidal forcing. This study utilizes current meters, pressure sensors, and optical DO probes to measure and study the …

Seasonal Occurrence, Relative Abundance, And Migratory Movements Of Juvenile Sandbar Sharks, Carcharhinus Plumbeus, In Winyah Bay, South Carolina, Caroline Collatos

Electronic Theses and Dissertations

Winyah Bay, located on the coast of South Carolina, is the fourth largest U.S. estuary by discharge rate (Voulgaris et al. 2002), and provides an annually used habitat for juvenile C. plumbeus (Abel et al. 2006, Gary 2009). From May to September 2016 and 2017, we set a total of 303 bottom longlines in middle and lower Winyah Bay to assess sex ratios, size distributions, and catch per unit effort (CPUE), as well as the potential influence of abiotic parameters on CPUE. A subset of eleven juvenile C. plumbeus was tagged with VEMCO (V16-4H) acoustic transmitters to analyze seasonal occurrence, …

Semi-Quantitative Assessment On Winyah Bay's Microplastic Contamination Levels, Samantha Ladewig

Electronic Theses and Dissertations

Although there is much concern globally regarding microplastic contamination in aquatic environments, there is little documentation on microplastic contamination concentrations within South Carolina inland waters and coastal areas. Specifically, Winyah Bay, SC should be of high priority for microplastic contamination evaluations as it is the third largest drainage basin (47,060 km2) and the second largest (157 km2) estuarine system on the east coast of the United States. Today, the general influencing physical factors on microplastic transport are mostly known by the scientific community, however, transport and deposition patterns of microplastics heavily vary by location depending on various physical, chemical, and …

Circulation, Cross-Shelf Exchange, And Blue Mussel (Mytilus Edulis) Population Connectivity In A Complex, Tidally Driven System, Leann M. Conlon

Electronic Theses and Dissertations

Because many marine species have a planktonic larval phase, an understanding of population connectivity (the exchange of individuals among populations) is critical for better understanding their adult populations. However, connectivity depends on both circulation patterns and any interacting biological factors. Of particular importance to organisms originating nearshore is the amount of cross-shelf exchange, as larvae within the slower moving coastal boundary layer experience shorter dispersal distances. I investigated circulation patterns and cross-shelf exchange along the Eastern Maine coast, a region with strong tidal currents and a complex coastline bounded in the offshore direction by a faster moving coastal current. I …

Effects Of Natural And Anthropogenic Forcing On Marsh Channel Evolution, Jeremiah Robinson

LSU Master's Theses

Wetlands have many ecological and physical properties that are essential for coastal communities. These ecosystems sustain local economies, provide essential habitats, are a source of numerous ecological and biological services, and protect coastal populations from storms. Of the many wetland types, salt marshes are among the most vulnerable to environmental changes. Salt marshes quickly respond to natural and human-driven perturbations and their high rate of loss in the last century is cause for concern.

In this project the rate of marsh loss driven by channel widening was measured through a comparative analysis of modern high resolution images and historic aerial …

Spatial And Temporal Distributions Of Pelagic Sargassum In The Intra-Americas Sea And Atlantic Ocean, Mengqiu Wang

USF Tampa Graduate Theses and Dissertations

Pelagic Sargassum is one type of marine macroalgae that is known to be abundant in the Gulf of Mexico and Sargasso Sea. It is also known to serve as a critical habitat for many marine animals. In the past few years, large amounts of Sargassum have been reported in the Tropical Atlantic and Caribbean Sea (CS), causing significant environmental and economic problems. The goal of this study is to improve the understanding of Sargassum distributions, quantity, transport pathways, and bloom mechanisms in the CS and Tropic Atlantic through combining a variety of techniques including satellite remote sensing, field and laboratory …

Advances In Amino Acid Analysis For Marine Related Matrices And Its Application To Coastal Shelf Settings In The Canadian Arctic, Rachel M. Mcmahon

OES Theses and Dissertations

Amino acids comprise up to 50% of organic matter in cellular material and are a major fraction of oceanic organic carbon. Amino acids are also considered highly labile during organic matter recycling, making them useful proxies for organic carbon cycling. Nevertheless, analysis of individual amino acids has been burdened by lengthy derivatization and complex analysis since the 1950s. In this thesis, I describe the modification of advanced analytical techniques, developed in the biomedical field, for analysis of marine matrices which allow the determination of at least 40 amino acids without the need for lengthy sample preparation and derivatization, twice the …

Plastics And Microplastics As Vectors For Bacteria And Human Pathogens, Amanda Lee Laverty

OES Theses and Dissertations

Since plastics degrade very slowly, they remain in the environment on much longer timescales than most natural substrates and can thus provide a novel habitat for colonization by bacterial communities. The full spectrum of relationships between plastics and bacteria, however, is little understood. The objective of this study was to examine marine plastic pollution as a substrate for bacteria, with particular focus on Vibrio spp., including the human pathogens, Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus.

Colonization experiments were set up in a tributary of the lower Chesapeake Bay to follow Vibrio spp. colonization and …

Desalination Concentrate Disposal: Ecological Effects And Sustainable Solutions, Ryan Hanley

Global Honors Theses

Freshwater availability is a growing global concern, and desalination is often presented as the solution, but from this important technology comes issues of toxic waste. Ecosystems are delicate areas that contain species adapted to that specific location, and any chemical or physical changes can disrupt the fitness of species. The concentrate byproduct waste from desalination plants is toxic to species if the concentrate is not compatible with the receiving water body. A critical review of scientific articles, industry-leading books, conversations with industry experts, and information from the American Membrane Technology Association conference was used to analyze the current knowledge. Species …

Assessing The Reliability Of The Benthic Mg/Ca–Temperature Proxy: A Uvigerina Core-Top Study From New Zealand, Cassandre R. Stirpe

Electronic Theses and Dissertations

Sediment cores from New Zealand’s Bay of Plenty and the Chatham Rise in the Southwest Pacific were sampled to establish a regional Mg/Ca–temperature calibration for the benthic foraminifer Uvigerina peregrina. Comparison of foraminiferal Mg/Ca from core-top sediments to local bottom water temperatures reveals a Mg/Ca–temperature relationship broadly consistent with previously published calibrations. In addition to bottom water temperatures, other environmental parameters are examined for possible influence on the Mg/Ca of foraminiferal calcite. Elderfield et al. (2006) proposed that such parameters may exert an influence at colder temperatures, particularly below temperatures of ~3oC (e.g. Lear et al., 2002; Elderfield et al., …

Detrital Protein Contributes To Oyster Nutrition And Growth In The Damariscotta Estuary, Maine, Usa, Cheyenne M. Adams

Electronic Theses and Dissertations

Oyster aquaculture is an expanding industry that relies on identifying and utilizing natural estuarine conditions for the economically viable production of a filter-feeding crop. The eastern oyster, Crassostrea virginica, is the principal species currently cultured in Maine. In addition to preferentially consumed phytoplankton, various detrital complexes (non-algal and/or non-living organic matter) may provide some nutrition to C. virginica between times of phytoplankton abundance. Here I investigated the importance of detrital proteins in supporting the growth of oysters cultured in the upper Damariscotta Estuary. Oyster aquaculture in this area is highly successful and previous reports indicate that labile detrital protein …

Morphologic Evolution Of A Nearshore Berm: One Year Monitoring At Ft. Myers Beach, Florida, Kristopher Jason Enfinger

Theses and Dissertations

Nourishment in the form of a nearhsore berm has become an important alternative method to protecting shorelines and introducing sediment back into the littoral system. In 2009, a nearshore berm was constructed at Ft. Myers Beach, Florida by the U.S. Army Corps of Engineers through maintenance dredging of a nearby navigational channel at Matanzas Pass. Constructed in the form of a nearshore bar, the berm was one of the shallowest placements in a low-wave energy setting. The Coastal Research Lab at the University of South Florida (USF-CRL) conducted field monitoring for the first four years after the construction. This project …

Evaluation Of Population Structure And The Interspecific Relationship Of Striped Marlin (Kajikia Audax) And White Marlin (K. Albida) Based On Traditional Or Genome-Wide Molecular Markers, Nadya Mamoozadeh

Dissertations, Theses, and Masters Projects

The istiophorid billfishes (marlins, spearfishes, and sailfish) are highly migratory pelagic fishes exhibiting broad and continuous spatial distributions in the Atlantic, Pacific, and Indian oceans. These species are targeted by a number of recreational, commercial, artisanal, and subsistence fisheries worldwide, and are also caught as bycatch in pelagic longline fisheries targeting tunas and swordfish. Though stock assessments have not been conducted for all istiophorids, assessments available for some species indicate that many istiophorid stocks are overfished and/or experiencing overfishing. However, the development of stock-specific recovery efforts is often impeded by a lack of information on basic species biology, including stock …

Biogeochemical Cycling Of Selenium In The Arctic Ocean, Kyle M. Mcquiggan

OES Theses and Dissertations

Changes in the global climate may have a pronounced effect on the biogeochemical cycling of trace elements like selenium (Se) in the Arctic Ocean. This study described the first quantitative examination of the biogeochemical cycle of selenium in the Amerasian Basin, providing the baseline from which future changes can be identified. Aerosol, dissolved and particulate water samples were collected for Se determinations during the U.S. GEOTRACES GN01 Arctic expedition that sampled the two parts of the Amerasian Basin in 2015: The Makarov Basin on the way to the North Pole and the Canada Basin on the return trip to Dutch …