Physical Sciences and Mathematics Commons^™

Supporting Data For Figures In "Wind-Enhanced Separation Of Large-Scale River Plumes From Coastal Corners", Michael M. Whitney

Department of Marine Sciences

This archive contains the supporting data for figures in the manuscript "Wind-enhanced separation of large-scale river plumes from coastal corners" by Michael M. Whitney. This study analyzes idealized models to quantify how large-scale river plumes and wind-driven currents interact at perpendicular coastal corners. Data are from the Regional Ocean Modeling System (ROMS) results for idealized model configurations. The Zip file (Figure_data.zip) contains MATLAB data files, which are named FigureXX_data.mat. Variable names and units correspond to graphed data of each figure in manuscript. Full descriptions of research methods and results are included in manuscript.

The Response Of Sea Ice And High-Salinity Shelf Water In The Ross Ice Shelf Polynya To Cyclonic Atmosphere Circulations, Xiaoqiao Wang, Zhaoru Zhang, Michael S. Dinniman, Petteri Uotila, Xichen Li, Meng Zhou

CCPO Publications

Coastal polynyas in the Ross Sea are important source regions of high-salinity shelf water (HSSW) – the precursor of Antarctic Bottom Water that supplies the lower limb of the thermohaline circulation. Here, the response of sea ice production and HSSW formation to synoptic-scale and mesoscale cyclones was investigated for the Ross Ice Shelf Polynya (RISP) using a coupled ocean–sea ice–ice shelf model targeted on the Ross Sea. When synoptic-scale cyclones prevailed over RISP, sea ice production (SIP) increased rapidly by 20 %–30 % over the entire RISP. During the passage of mesoscale cyclones, SIP increased by about 2 times over …

Potential Interactions Between Diatoms And Bacteria Are Shaped By Trace Element Gradients In The Southern Ocean, Alexa R. Sterling, Laura Z. Holland, Randelle M. Bundy, Shannon M. Burns, Kristen N. Buck, P. Dreux Chappell, Bethany D. Jenkins

OES Faculty Publications

The growth of diatoms in the Southern Ocean, especially the region surrounding the West Antarctic Peninsula, is frequently constrained by low dissolved iron and other trace metal concentrations. This challenge may be overcome by mutualisms between diatoms and co-occurring associated bacteria, in which diatoms produce organic carbon as a substrate for bacterial growth, and bacteria produce siderophores, metal-binding ligands that can supply diatoms with metals upon uptake as well as other useful secondary compounds for diatom growth like vitamins. To examine the relationships between diatoms and bacteria in the plankton (diatom) size class (> 3 mu m), we sampled both …

A Data Repository For Clarifying Water Clarity: A Call To Use Metrics Best Suited To Corresponding Research And Management Goals In Aquatic Ecosystems (York River Estuary Case Study Dataset), Jessica S. Turner, Kelsey A. Fall, Carl T. Friedrichs

Data

This data repository is a permanent archive of the results presented in the associated publication (Turner et al. 2022, Limnology & Oceanography Letters, doi.xxxx). The objective of this study was to illustrate a water clarity phenomenon in the lower York River Estuary of the Chesapeake Bay. The data include light attenuation, Secchi depth, turbidity, and salinity from the lower York River Estuary in western Chesapeake Bay, Virginia, USA from the years 2014-2016.

Data Supporting The Figures In "Freshwater Composition And Connectivity Of The Connecticut River Plume During Ambient Flood Tides", Michael M. Whitney

Department of Marine Sciences

Supporting data for figures in "Freshwater composition and connectivity of the Connecticut River plume during ambient flood tides" by Michael M. Whitney, Yan Jia, Kelly L. Cole, Daniel G. MacDonald, Kimberly D. Huguenard. The scientific journal article is published in Frontiers in Marine Science (2021). The main objectives of this study on the Connecticut River plume formed during ambient flood tidal conditions are: 1) determining the contributions of river source waters from different parts of the tidal cycle and 2) quantifying the degree and spatial distribution of connectivity of these source waters with the bounding plume fronts. A high-resolution numerical …

Supporting Data For Figures In "Freshwater Composition And Connectivity Of The Connecticut River Plume During Ambient Flood Tides", Michael M. Whitney

Department of Marine Sciences

Supporting data for figures in "Freshwater composition and connectivity of the Connecticut River plume during ambient flood tides" by Michael M. Whitney, Yan Jia, Kelly L. Cole, Daniel G. MacDonald, Kimberly D. Huguenard. The scientific journal article is published in Frontiers in Marine Science (2021). The main objectives of this study on the Connecticut River plume formed during ambient flood tidal conditions are: 1) determining the contributions of river source waters from different parts of the tidal cycle and 2) quantifying the degree and spatial distribution of connectivity of these source waters with the bounding plume fronts. A high-resolution numerical …

Supporting Data For "Freshwater Composition And Connectivity Of The Connecticut River Plume During Ambient Flood Tides", Michael M. Whitney

Department of Marine Sciences

Supporting data for figures in "Freshwater composition and connectivity of the Connecticut River plume during ambient flood tides" by Michael M. Whitney, Yan Jia, Kelly L. Cole, Daniel G. MacDonald, Kimberly D. Huguenard. The scientific journal article is published in Frontiers in Marine Science (2021). The main objectives of this study on the Connecticut River plume formed during ambient flood tidal conditions are: 1) determining the contributions of river source waters from different parts of the tidal cycle and 2) quantifying the degree and spatial distribution of connectivity of these source waters with the bounding plume fronts. A high-resolution numerical …

Vims Hydrofile: Ambient Water Monitoring And Meteorological Data For Chesapeake Bay And Near Coastal Shelf Waters, 1942-1982, Gary F. Anderson

Data

Historical ambient water quality and meteorologic conditions from cruises conducted by the Virginia Institute of Marine Science in Chesapeake Bay and nearshore coastal shelf waters over a 40-year period through 1982.

Bulk water parameters were routinely measured during cruises conducted in Chesapeake Bay and nearshore coastal waters conducted by VIMS over four decades. Data were punched on 80-character cards known as ‘Form 1’ format by the VIMS central Computer Center. These were later converted to digital files. For this publication the Form 1 files were unpacked into yearly flat files containing two record types:

Station records - Contain surface observations …

Presence/Absence And Density Data For Epipelagic Tows Collected During R/V Blazing Seven Cruises Lf2016a And Lf2016b, Northern Gulf Of Mexico From 2016-06-09 To 2016-07-28, Jay R. Rooker, David Wells

DEEPEND Datasets

This dataset reports presence/absence and density data for epipelagic tows collected in the northern Gulf of Mexico during R/V Blazing Seven cruises LF2016A and LF2016B (2016-06-09 to 2016-07-28). Larval fishes were sampled from 48 stations and cruise data were collected at each site including latitude/longitude, date, time, environmental data (temperature, salinity, dissolved oxygen) and Sargassum dry weight. Larval catch data before and after the oil spill will be compared to improve our understanding of the causes of temporal variability as it relates to the Deep-Water Horizon oil spill (DWHOS). Habitat associations of selected taxa (billfishes, tunas, dolphinfishes, flyingfishes) will be …

Conductivity, Temperature, And Depth (Ctd) Data For Deepend Stations, Cruise Dp05, May 2017, David English, Chuanmin Hu, April Cook, Tracey Sutton

DEEPEND Datasets

Conductivity, temperature, and depth data from the ship's CTD, which was deployed at each of the DEEPEND stations. Depth of cast was variable, but extended from near-surface waters to below the euphotic zone. This data also includes measurements from a red light transmissometer, a chlorophyll fluorometer, and a dissolved oxygen sensor. The data is used in the assessment of the water column's vertical structure, and for comparison with physical models. Data were collected in the northern Gulf of Mexico from May 2-12, 2017.

Cruise Data For Neuston Net And Paired Bongo Net Tows From 47 Stations In The Northern Gulf Of Mexico From R/V Pelican Cruise Lf2017a July 2017, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Cruise Data For Neuston Net And Paired Bongo Net Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2016a And Lf2016b, June-July 2016, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Presence/Absence And Density Data For Epipelagic Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Larval catch data after the oil spill is being used to improve our understanding of the causes of temporal variability as it relates to the Deep Water Horizon oil spill (DWHOS). Bongo and neuston net tows were conducted at 48 stations in both June and July, 2015 in the northern Gulf of Mexico. Cruise data collected at each site included latitude/longitude, date, time and environmental data (temperature, salinity, dissolved oxygen). The occurrence and density of selected epipelagic (e.g., billfishes, tunas, dolphinfishes, flyingfishes) and deep pelagic (e.g., lanternfishes, bristlemouths, marine hatchetfishes) fish larvae were quantified and are being used to extend …

Cruise Data For Neuston Net And Paired Bongo Net Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Housatonic Organic Contaminants: Physical Data Archive, Michael M. Whitney

Department of Marine Sciences

This archive includes physical data from a Connecticut Sea Grant Project on organic contaminants in the Housatonic River estuary and Long Island Sound. The data included are water: temperature, salinity, dissolved oxygen, pH, and current velocities. Observations were collected in 2012 and 2013 from the R/V Weicker.

Circulation And Water Properties And Their Relationship To The Oyster Disease Msx In Delaware Bay, Zhiren Wang, Dale B. Haidvogel, David Bushek, Susan E. Ford, Eileen E. Hofmann, Eric N. Powell, John Wilkin

CCPO Publications

We apply a high-resolution hydro-dynamical model to investigate the role of physical factors influencing infection prevalence of Haplosporidium nelsoni, causative agent of MSX disease in the eastern oyster (Crassostrea virginica), in Delaware Bay, USA. Validation studies conducted for the years 2000 and 2010-2011 confirm that the model, based upon the Regional Ocean Modeling System, has significant skill in the recovery of observed water level, temperature, salinity, and velocity. Multi-year simulations are performed for periods representing temporal and spatial variations in H. nelsoni infection prevalence (1974-76, 1979-81, 1984-86, 1990-92, and 2006-09) to assess the degree to which the …

A Conceptual Model Of An Arctic Sea, P. St-Laurent, F. Straneo, D. G. Barber

CCPO Publications

We propose a conceptual model for an Arctic sea that is driven by river runoff, atmospheric fluxes, sea ice melt/growth, and winds. The model domain is divided into two areas, the interior and boundary regions, that are coupled through Ekman and eddy fluxes of buoyancy. The model is applied to Hudson and James Bays (HJB, a large inland basin in northeastern Canada) for the period 1979-2007. Several yearlong records from instruments moored within HJB show that the model results are consistent with the real system. The model notably reproduces the seasonal migration of the halocline, the baroclinic boundary current, spatial …

Comments On Buzan Et Al. “Positive Relationships Between Freshwater Inflow And Oyster Abundance In Galveston Bay, Texas”, R. Eugene Turner

Faculty Publications

Buzan et al. critique Turner’s (Estuaries and Coasts 29:345–352, 2006) analysis of the relationship between freshwater inflow and oyster productivity in the Gulf of Mexico, using 16 years of fisheries-independent data for Galveston Bay. They conclude that the catch-per-unit effort (CPUE; number h−1) of marketable oysters increase 1 to 2 years after years with increased freshwater inflows, and they express concerns that water supply managers may mis-apply the results of Turner (Estuaries and Coasts 29:345–352, 2006) to justify a reduced freshwater inflow to Galveston Bay. I find no relationship between the CPUE of oyster spat or marketable oyster density and …

Hydrodynamic Numerical Ocean Models Support Environmental Studies And Conservation Efforts: From An Arctic Estuary To A Caribbean Coral Reef, Tal Ezer

CCPO Publications

Potential future climate changes, as highlighted recently by the Intergovernmental Panel on Climate Change (IPCC) report, are likely to have different local impacts in different regions of the globe. Oceanic ecosystems may be especially sensitive to large environmental variation, and they are closely connected to physical changes such as temperature, salinity, currents and sea level. Two examples, from very different environments – one in a cold climate and one in a tropical climate, will be discussed here to show how hydrodynamic numerical models are helping to understand physical-biological interactions and potentially help dealing with future climate changes.

Distribution Of The Euryhaline Squid Lolliguncula Brevis In Chesapeake Bay: Effects Of Selected Abiotic Factors, I. K. Bartol, R. Mann, M. Vecchione

Biological Sciences Faculty Publications

The majority of cephalopods are thought to have limitations arising from physiology and locomotion that exclude them from shallow, highly variable, euryhaline environments. The brief squid Lolliguncula brevis may be a notable exception because it tolerates low salinities, withstands a wide range of environmental conditions, and swims readily in shallow water. Little is known about the distribution of L. brevis in Chesapeake Bay, a diverse and highly variable estuary. Therefore, a survey of L. brevis was conducted in the Virginia portion of Chesapeake Bay from 1993 to 1997 using a 9.1 m otter trawl, and the effects of selected factors …

Measurements Of Salinity In The Coastal Ocean: A Review Of Requirements And Technologies, Catherine Woody, Eddie Shih, Jerry Miller, Thomas Royer, Larry P. Atkinson, Richard S. Moody

CCPO Publications

Salinity, a measure of the dissolved salts in seawater, is a fundamental property of seawater and basic to understanding biological and physical processes in coastal waters. In the open ocean long term salinity measurements are identified as necessary to understand global climate studies, hydrological cycle, and circulation. In the coastal oceans, information on salinity is critical to understanding biological effects on ecosystem function such as disease, nursery grounds, or harmful algal blooms and on physical processes such as freshwater runoff estuarine mixing, and coastal currents. While the importance of salinity is recognized, little attention has been given to making routine …

Frontogenesis In The North Pacific Oceanic Frontal Zones--A Numerical Simulation, Michael S. Dinniman, Michele M. Rienecker

CCPO Publications

A primitive equation model [Geophysical Fluid Dynamics Laboratory's (GFDL's) MOM 2] with one degree horizontal resolution is used to simulate the seasonal cycle of frontogenesis in the subarctic frontal zone (SAFZ) and the subtropical frontal zone (STFZ) of the North Pacific Ocean. The SAFZ in the model contains deep (greater than 500 m in some places) regions with seasonally varying high gradients in temperature and salinity. The gradients generally weaken toward the east. The STFZ consists of a relatively shallow (less than 200 m in most places) region of high gradient in temperature that disappears in the summer/fall. The high …

Mesoscale Hydrographic Variability In The Vicinity Of Points Conception And Arguello During April May 1983: The Opus 1983 Experiment, Larry P. Atkinson, Kenneth H. Brink, Russ E. Davis, Burton H. Jones, Theresa Paluszkiewicz, David W. Stuart

CCPO Publications

In April and May 1983, interdisciplinary oceanographic observations were made of upwelling events in the Point Conception area off southern California. The principal objective was to observe the structure and time dependence of the upwelling system. To accomplish this, two ships, two aircraft, moorings, drogues, and satellite imagery were all included in the observational effort. During the intensive measurement period three main upwelling events and two intervening relaxation or downwelling intervals were sampled during what was a period of overall longer-term sea surface warming. Surface temperatures during upwelling were as low as 10.5°C in the upwelling center between Point Arguello …

James River Slack Water Data Report : Temperature, Salinity, Dissolved Oxygen, 1971 - 1980, T. J. Brooks, C. S. Fang

Reports

The slack water survey program, which has been supp orted by the State Water Control Board and the Virginia Institute of Marine Science under the Cooperative State Agencies program, provides an extended series of tem perature, salinity, dissolved oxygen and nutrient measurements along the James River. These have been used to: 1) establish, verify, and update mathe matical and physical hydraulic models; 2) provide a baseline against which effects of unusual events have been measured; and could be used to: 3) es tablish annu al and longer period 11 climatological" trends in response to changing natural phenomena and man-made modifica …

Continental Shelf Processes Affecting The Oceanography Of The South Atlantic Bight. Progress Report, 1 June 1980-1 June 1981, Larry P. Atkinson

CCPO Publications

(Introduction) In the past year we executed our largest field effort to date, GABEX-1. The vast amount of data gathered has now been reduced to workable form and we report on some of the first results in this report. The GABEX-1 measurements combined with other observations in the last year have greatly increased our understanding of the South Atlantic Bight during the spring transition period when the shelf goes from horizontal to vertical stratification.

This progress report contains selected reprints, drafts, and parts of technical reports that represent our work over the past three years.

Role Of Gulf Stream Frontal Eddies In Forming Phytoplankton Patches On The Outer Southeastern Shelf, James A. Yoder, Larry P. Atkinson, Thomas N. Lee, Hongsuk H. Kim, Charles R. Mcclain

CCPO Publications

Continuous surface mapping of temperature, salinity, and chlorophyll along a 300-km segment of the Gulf Stream cyclonic front defined the spatial scales of a large diatom patch that persisted throughout a 10-day study. The patch was localized in the upwelled cold core of a Gulf Stream frontal eddy centered over the 200-m isobaths off Jacksonville, Florida, in April 1979. The µ g liter^-1 surface chlorophyll isopleth enclosed an area >1,000km² with an alongshore dimension of 130km. Surface chlorophyll exceeded 5µg liter^-1 within the upwelled cold core of the eddy, 10-100X higher than concentrations in Gulf Stream or …

First Preliminary Report Of The Gabex-1 Cruises: Station Logs, Standard Sections And Maps And Time Series Transects, Larry P. Atkinson, James J. Singer, William S. Chandler

CCPO Publications

Research progress is reported in studies of the oceanography of the South Atlantic Bight during the spring transition period. Volume II contains the preliminary cruise report.

Alkalinity And Ph In The Southern Chesapeake Bay And The James River Estuary, George T. F. Wong

OES Faculty Publications

The ranges of alkalinity and pH in the southern Chesapeake Bay and the James River estuary were 2.25 meq·liter⁻¹ at 32‰ to